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Applied and Environmental Microbiology, July 2002, p. 3377-3384, Vol. 68, No. 7
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.7.3377-3384.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Institut für Mikrobiologie, Westfälische Wilhelms-Universität, D-48149 Münster,1 Bayer AG, D-51368 Leverkusen, Germany2
Received 25 January 2002/ Accepted 11 April 2002
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-amino group (24). In nature cyanophycin is produced by most but not all cyanobacteria as a temporary nitrogen reserve material during the transition of cells from the exponential phase to the stationary phase (15). At neutral pH and physiological ionic strength, cyanophycin is insoluble and deposited in the cytoplasm as membraneless granules (13). Cyanophycin is of biotechnological interest because purified cyanophycin can be chemically converted into a polymer with a reduced arginine content (11), which might be used like polyaspartic acid as a biodegradable substitute for synthetic polyacrylate in various technical processes (22). In addition, cyanophycin might also be of interest for other applications if the unknown physical and material properties of this polymer are revealed. Because of the low polymer content, and the slow growth of cyanobacteria, resulting in only low cell densities, cyanobacteria are not suitable for large-scale production of cyanophycin (3), and sufficient amounts of cyanophycin were hitherto not available.
The polymerization reaction is catalyzed by only one enzyme, which is referred to as cyanophycin synthetase (CphA) (27). The cphA genes from Anabaena variabilis ATCC 29413, Anabaena sp. strain PCC7120, Synechocystis sp. strain PCC6803, Synechocystis sp. strain PCC6308, Synechococcus elongatus, and Synechococcus sp. strain MA19 were cloned and expressed in Escherichia coli (1, 4, 7, 19, 27). More recently, heterologous expression of cphA was also demonstrated at a small scale in recombinant strains of Ralstonia eutropha, Corynebacterium glutamicum, and Pseudomonas putida (3). Whereas in cyanobacteria the molecular mass of the polymer strands ranged from 25 to 100 kDa (23), the polymer from recombinant strains harboring cphA as well as in vitro-synthesized polymer exhibited a much lower range (25 to 30 kDa) and polydispersity. Furthermore, it was found that the polymer isolated from recombinant strains contained lysine as an additional amino acid constituent (3, 27).
Due to the wide knowledge of its metabolism and available genetic tools, E. coli is one of the most commonly used bacterial hosts for the production of recombinant proteins (14). Several expression systems have been developed for technical-scale production of recombinant proteins in E. coli based on the regulated trp, lac, or lambda PL promoter (9).
In this study, we describe the cultivation of recombinant E. coli strains harboring cphA from Synechocystis sp. strain PCC6803 at the 500-liter scale for the production of cyanophycin. Since the previously described method for the purification of cyanophycin (24) is not applicable to a large-scale, a simplified method for isolation of the polymer at the technical scale was elaborated.
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TABLE 1. Bacterial strains and plasmids used in this study
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Cultivation at the 30-liter scale.
A Biostat UD30 stainless steel reactor (B. Braun Biotech International, Melsungen, Germany), which had a total volume of 42 liters (28 cm inner diameter and 71 cm height) and a d/D value relation (relation of stirrer diameter to vessel diameter) of 0.375, was used for cultivations at the 30-liter scale. This bioreactor was equipped with three stirrers, each containing six paddles and a Funda-Foam mechanical foam destroyer (B. Braun Biotech International, Melsungen, Germany). In addition, ports were used for sterilizable probes to measure dissolved oxygen (pO2) (model 25; Mettler Toledo GmbH, Steinbach, Switzerland), pH (model Pa/25; Mettler-Toledo GmbH), foam (model L300/Rd. 28; B. Braun Biotech International), temperature (pt 100 electrode; M. K. Juchheim GmbH, Fulda, Germany), and optical density at 850 nm (model CT6; Sentex/Monitek Technology Inc.). The operations were controlled and recorded by a digital control unit in combination with the MFCS/win software package (B. Braun Biotech International).
Carbon dioxide and oxygen concentrations in the spent gas leaving the bioreactor were measured with a URAS 10 P NDIR spectrophotometer (Mannesmann, Hartmann and Braun, Frankfurt, Germany) or a Magnos 6 G oxygen analyzer (Mannesmann, Hartmann and Braun), respectively. Cultivations were done at 30 or 37°C and at a pO2 range of 0 to 100% saturation in the medium, which was controlled by agitation rates between 100 and 800 rpm and aeration rates of 0.4 and 1.0 vvm (volume per volume x minute). The pH in the medium was held between 7.0 and 7.2 by controlled addition of 4 N HCl or NaOH. Foam was removed by a mechanical foam destroyer; if this was not sufficient, the antifoam agent Silikon Antischaum Emulsion SLE (Wacker, Darwin Vertriebs GmbH, Ottobrunn, Germany) was added. Small samples withdrawn from the culture fluid for analytical purposes were separated into a cell pellet and a cell-free supernatant by 15 min of centrifugation at 3,500 x g.
Cultivation at the 500-liter scale.
Cultivations at the 500-liter scale were performed with a Biostat D650 stainless steel bioreactor (B. Braun Biotech International), which had a total volume of 650 liters (64 cm inner diameter and 198 cm height) and the same d/D value as the Biostat UD30 described above. All other equipment was as described above for the Biostat UD30 bioreactor. Fermentations were done as described above or in the Results section; however, the corresponding tip speeds of the stirrer blades were between 1.3 and 5.0 m s-1, with stirrer speeds between 100 and 400 rpm.
Cell harvest from 30- and 500-liter scale cultivations.
Cells were harvested by centrifugation at 4°C in a CEPA type Z41 or type Z61 continuous centrifuge (Carl Padberg Zentrifugenbau GmbH, Lahr, Germany), respectively.
Analysis of ammonium, acetate, and glycerol.
The concentration of ammonium was determined in cell-free supernatants by employing a gas-sensitive ammonium electrode (type 152303000; Mettler Toledo GmbH) or ammonium test bars (Merck AG, Darmstadt, Germany). The concentrations of glycerol and acetic acid in cell-free supernatants were measured enzymatically by using the corresponding test kits (Roche Diagnostics GmbH, Mannheim, Germany).
Cyanophycin synthetase assay.
The enzyme activity of the cyanophycin synthetase was measured in the soluble cell fraction by employing a radiometric enzyme assay as described by Aboulmagd et al. (2).
Small-scale purification of cyanophycin.
Cyanophycin was isolated in small scale from the recombinant cells by the procedure described by Simon and Weathers (24) for Anabaena cylindrica.
Large-scale isolation of cyanophycin from bulk cell mass.
For isolation of cyanophycin from cells obtained from cultivations at the 500-liter scale, a simplified acid extraction procedure was developed. The cellular dry mass was suspended in tap water to give a final concentration of 0.1 g ml-1. Under agitation and pH control, the suspension was acidified to pH 1 by addition of concentrated HCl. After being stirred for 6 h at room temperature, the suspension was centrifuged for 1 h at 3,500 x g. While the supernatant was kept for further use (see below), the cell pellet was resuspended in 0.1 N HCl and stirred for 1 h. After centrifugation, the pellet was discarded, and the supernatant was added to the supernatant obtained from the first centrifugation. The pH of the combined supernatants was then adjusted to 7 to 7.5 by addition of solid or 10 N NaOH. After centrifugation, the pellet, which contained crude cyanophycin, was washed once with water, resuspended in 0.1 N HCl, and agitated for 1 h. The suspension was centrifuged, and the supernatant was neutralized by addition of NaOH. After centrifugation, the pellet was washed twice with water, frozen at -30°C, and lyophilized in a BETA 1-16 type freeze-dryer (Christ Gefriertrocknungsanlagen, Osterode, Germany).
Determination of amino acid constituents of cyanophycin.
The amino acid composition of cyanophycin was determined by high-pressure liquid chromatography analysis of ortho-phthaldialdehyde (OPA)-modified amino acids. Purified cyanophycin was treated for 15 h at 95°C with 6 N HCl. After lyophilization, the material was dissolved in starting eluent (37 mM sodium acetate [pH 7.0], 26% [vol/vol] methanol). The solution was clarified by 5 min of centrifugation at 10,000 x g. To 460 µl of this solution, 200 µl of 0.5 M sodium borate (pH 9.5) and 100 µl of OPA reagent (100 mg of ortho-phthaldialdehyde, 9 ml of methanol, 1 ml of 0.5 M sodium borate [pH 9.5], 100 µl of 2-mercaptoethanol) were added. The reaction was stopped after exactly 200 s by addition of 60 µl of 0.75 N HCl. To 100 µl of this reaction mixture was added 400 µl of starting eluent. Then 20 µl of this solution was applied to a reversed-phase column (0.46 by 12.5 cm; RP18 Techsphere ODS-2; Kontron Instruments, Neufahrn, Germany) equilibrated with starting eluent. OPA-amino acids were eluted with a methanol gradient (26 to 75%, vol/vol) at 40°C at a flow rate of 1.0 ml min-1 and monitored fluorimetrically at 330 and 450 nm (excitation and emission) with a model 1046A fluorescence detector (Hewlett Packard, Waldbronn, Germany). Calibration was done with chromatographically pure amino acids (Kollektion AS-10 from Serva Feinbiochemica, Heidelberg, Germany).
Determination of carbohydrate, protein, and nucleic acid impurities and water content in cyanophycin.
Quantification of carbohydrate was done by following the colorimetric reaction of cyanophycin samples with Anthrone reagent with glucose as the standard as described by Hanson and Philips (10). Protein and nucleic acid content was determined UV spectrophotometrically in clear solutions of cyanophycin preparations in 100 mM HCl by using the following equations: (i) protein, milligrams per milliliter = 1.55 A280 - 0.76 A260 (25), and (ii) nucleic acids, milligrams per milliliter = 0.05 A260 (20). The water content of freeze-dried cyanophycin was determined by the coulometric Karl Fischer method (16).
Electrophoresis.
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was performed in 11.5% (wt/vol) polyacrylamide gels as described by Laemmli (12). Proteins and cyanophycin were stained with Serva Blue R. Protein concentration was determined by the procedure of Bradford (5).
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PL promoter and the temperature-sensitive cI857 repressor. Expression of cphA during large-scale cultivation was achieved by a shift of the cultivation temperature from 30 to 37°C. An increase to higher temperatures (i.e., 42°C), which is usually recommended in laboratory protocols for this induction system (21), was not used in order to reduce heat shock response.
Several E. coli strains (Table 1) were transformed with pMa/c5-914::cphA and tested for stability. Due to the light-scattering cyanophycin inclusions, recombinant strains expressing cphA formed characteristic whitish colonies which could be easily distinguished from the pale wild-type colonies. Whereas transformants of E. coli DH1 produced only whitish colonies even after several transfers in new complex medium under producing conditions (37°C), others, including E. coli strains Top10, DH5
, JM109, and SMH50, also generated various portions of wild-type colonies, indicating plasmid instability. Therefore, E. coli DH1(pMa/c5-914::cphA) was used for cultivations at the larger scale.
Cultivation of E. coli DH1(pMa/c5-914::cphA) at the 30-liter scale in mineral salts medium.
Various batch or fed-batch cultivations of E. coli DH1(pMa/c5-914::cphA) in mineral salts medium with glycerol or glucose as the carbon sources and in the presence or absence of Casamino Acids were done. Only trace amounts of cyanophycin were produced in medium without additional Casamino Acids (see fed batches 1 and 2 in Fig. 1). In order to provide sufficient amino acids as precursors for biosynthesis of cyanophycin, further cultivations were performed after addition of 1% (wt/vol) Casamino Acids (Fig. 1, batch cultivation and fed batches 3 to 6).
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FIG. 1. Different cultivations of E. coli DH1(pMa/c5-914::cphA) at the 30-liter scale in mineral salts medium (MM). Fed-batch cultivations 3 to 6 were done after addition of 1% (wt/vol) Casamino Acids (CA), as indicated. Glucose was used as the carbon source at an initial concentration of 2.5% (wt/wt) in fed batches 1 and 3; all other cultivations were performed with glycerol. The initial concentration of glycerol was 4% (wt/vol) except in fed batch 6, where 2% (wt/vol) was used. Induction was achieved by a temperature shift at the exponential growth phase except in the batch cultivation and fed batch 4, where the temperature was adjusted to 37°C for the beginning of cultivation. CDM, cellular dry matter.
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FIG. 2. Fed-batch fermentation of E. coli DH1(pMa/c5-914::cphA) at the 30-liter scale in semidefined medium. The cultivation was done in a 30-liter stirred-tank reactor containing 26 liters of mineral salts medium with 2% (vol/vol) glycerol, 1 g of ammonium sulfate liter-1, and 1% (vol/vol) Casamino Acids at the beginning of the fermentation. The cultivation parameters were pH 7.0, aeration at 0.8 to 1.0 vvm, and agitation at 100 to 750 rpm. Aeration and agitation were adjusted according to the oxygen demand of the culture. The temperature was raised from 30 to 37°C after 15 h of cultivation time for induction of cphA, as indicated by the solid line. During the fermentation, 0.25 to 0.5 g of glycerol per liter of medium (dashed arrows) and 0.5 g of NH4Cl liter-1 (solid arrows) were added at the time points indicated. Activity of cyanophycin synthetase was determined as described in Materials and Methods. The availability of the carbon source was estimated by monitoring the CO2 content in the exhaust gas and the dissolved oxygen (pO2) level in the medium.
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Cultivation of E. coli DH1(pMa/c5-914::cphA) at the 500-liter scale.
Due to the good stability of the expression system in E. coli DH1 in contrast to other strains tested (Table 1), a scale-up to the 500-liter culture volume was performed. Upscaling was facilitated by the similarity of the 30-liter bioreactor to the 500-liter bioreactor used in this study with regard to construction and diameter-to-height ratio as well as stirrer diameter-to-vessel diameter ratio. In contrast to the cultivations at the 30-liter scale, airflow was kept at 0.15 vvm to avoid foam formation and stirrer speed was adjusted manually to avoid insufficient supply of oxygen at the exponential growth phase.
Four cultivation experiments were done at the 500-liter scale. With the exception of one cultivation experiment, reproducible cell densities between 6.6 and 7.7 g liter-1 with cyanophycin contents of between 17 and 21% (wt/wt) were obtained. A fourth cultivation experiment at this scale gave a slightly lower cell density and a cyanophycin content of only 11% (wt/wt). The time course of one representative fermentation at the 500-liter scale is shown in Fig. 3. After 16 h, a cell density of 7.7 g of CDM liter-1 was obtained. Approximately 3.6 kg of dry cellular mass was obtained after centrifugation and freeze-drying of the cells with a cyanophycin content of 21% (wt/wt). Thus, the cells obtained from a single cultivation experiment contained a total of 750 g of cyanophycin.
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FIG. 3. Batch fermentation of E. coli DH1(pMa/c5-914::cphA) at the 500-liter scale in complex medium. The cultivation was done in a 500-liter stirred-tank reactor containing 430 liters of TB medium. Fermentation parameters were pH 7.0, aeration at 0.15 vvm, and agitation at 100 to 500 rpm. The temperature was raised from 30 to 37°C after 2 h of cultivation, as indicated by the solid line. Activity of cyanophycin synthetase was determined as described in Materials and Methods. O2 and CO2, oxygen and carbon dioxide concentrations, respectively, in the exhaust gas.
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The simplicity of the pH-dependent solubilization-precipitation steps on the one hand was promising for upscaling this part of the purification protocol. On the other hand, simple upscaling of the first part of the protocol is complicated by the time-consuming and laborious cell disruption and washing steps. Therefore, attempts were undertaken to develop a simple and time-saving modification of the method of Simon and Weathers (24).
Cell disruption by ultrasonification could be omitted by stirring whole cells in diluted HCl at pH 1.0 for 6 h at room temperature. Higher pHs or shorter incubation times reduced the final yield of cyanophycin (data not shown). Though the cells appeared almost intact after such treatment, as evaluated by microscopic inspection, the occurrence of intracellular cyanophycin granules was greatly reduced (Fig. 4). This indicated that an exogenous pH of 1 both dissolved cyanophycin inside the cells and extracted the dissolved polymer from the cells. Approximately 69% of the cyanophycin was extracted from the cells by this first step. The amount of polymer remaining in the cells could be further reduced by repeating the acid extraction step. After the second acid extraction, approximately 97% of the cyanophycin could be isolated, and only 3% remained in the cells (Fig. 4c). Therefore, two subsequent acid extractions are sufficient and allow an economically feasible isolation of the polymers (see Materials and Methods). The acid extraction of whole cells made not only the mechanical cell disruption unnecessary, but also several centrifugation steps which have to be done according to the conventional procedure to collect and wash the crude cyanophycin (24). Attempts to replace all other centrifugations by filtration through cotton wool, mull, and paper or glass fiber filters resulted in insufficient separations (details not shown).
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FIG. 4. Effect of the number of extraction steps on the release of cyanophycin from cells. (a) Relative amounts of purified cyanophycin obtained after different numbers of acid extractions of the cells. (b) Cells before starting acid treatment. (c) Cells after first acid extraction. Prior to microscopic inspection, the cell-containing samples were neutralized by the addition of NaOH. Bars (b and c), 10 µm.
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FIG. 5. SDS-PAGE of cyanophycin purified by different purification protocols. Lanes 1 to 6 each contained 75 µg of SDS-denatured cyanophycin preparations. Lane 1, purified by the method of Simon and Weathers (24); lanes 2 to 6, purified by the acid extraction procedure; lanes 2 to 5, different lots of preparations obtained after only one acidification-neutralization step; lane 6, preparation of cyanophycin obtained after two acidification-precipitation steps as described in Materials and Methods. The sizes of molecular mass standard proteins (lane Std) are provided at the left. Cyanophycin and protein bands were visualized by staining with Serva Blue R.
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TABLE 2. Quantitative analysis of cyanophycin preparations obtained by the acid extraction procedure or by the method described by Simon and Weathers (24)a
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Cultivation experiments in different media revealed that cyanophycin synthesis in the recombinant E. coli strains used in this study was dependent on complex nutrient components such as Casamino Acids. This indicates that these strains need the provision of amino acids or small peptides which can serve as substrates or primers for cyanophycin synthetase and cyanophycin formation (2, 3). In order to minimize process costs, cultivation in mineral medium is desirable. Further investigations using metabolically engineered strains of E. coli are required to obtain cyanophycin production in mineral salts medium.
The acid extraction procedure presented here abolished a bottleneck in the biotechnological production of cyanophycin. In contrast to the labor-intensive, costly, and time-consuming method described by Simon and Weathers (24), which is useful at the laboratory scale, the novel acid extraction method of whole cells is simple and time- and cost-saving. Thus, it offers the possibility of purifying cyanophycin from bulk cell mass at the large scale. The minor disadvantage in yield is compensated for by a lower content of cellular impurities in the final product. Further attempts will be undertaken to reduce the remaining centrifugation steps. In addition, the application of this method to other gram-negative and gram-positive cyanophycin-producing recombinant strains (3) will be examined.
The technical assistance of Katja Kemper during large-scale purification of cyanophycin is gratefully acknowledged.
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