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Applied and Environmental Microbiology, July 2002, p. 3392-3400, Vol. 68, No. 7
0099-2240/02/$04.00+0 DOI: 10.1128/AEM.68.7.3392-3400.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Food Science and Nutrition, University of Minnesota, St. Paul, Minnesota 55108
Received 2 November 2001/ Accepted 10 April 2002
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The genetic nature and complex process of nisin biosynthesis inherently complicate expression of nisin in other LAB. Production of nisin is encoded by a cluster of genes proposed to be transcriptionally arranged as nisABTCIP, nisRK, and nisFEG, and this cluster is closely linked with sucrose utilization genes on a large, conjugative transposon (17, 23). This gene cluster encodes the nisin precursor protein (NisA), as well as proteins involved in posttranslation modifications, immunity for the producing cell, transcriptional regulation, transport, and processing of the prepeptide (11, 12, 13, 18, 21, 22, 32, 35, 36). The precursor is an inactive peptide that is chemically modified by the products of nisB and nisC (33). The chemical processes include dehydration of serine and threonine residues and formation of the thioether bridges as meso-lanthionines and ß-methyllanthionines, which are characteristics of lantibiotics (31). The modified precursor peptide is transported by NisT and processed by a subtilisin-like protease, NisP, which cleaves the 23-amino-acid leader peptide to form an extracellular mature nisin peptide (21). The mature nisin peptide can then function as an autoinducer to regulate expression of the nisin genes through a two-component regulatory system, NisRK (23). The proposed model predicts that the extracellular mature nisin accumulates to a critical level and activates the sensor kinase, NisK, by autophosphorlation on a histine residue at the expense of ATP. It is proposed that the phosphoryl group is subsequently transferred to an asparate residue on the regulator protein, NisR, which can then activate the transcription of nisABTCIP and nisFEG. In addition to this nisin autoregulation, there are also other factors that influence the transcription of the nisin biosynthetic genes in a NisRK-independent fashion (4). To protect the producing cell, the membrane-associated NisI and NisFEG function together as immunity proteins (13, 22, 29, 32). However, the precise mechanism of immunity has not yet been elucidated.
Expression of nisin in a food grade manner in other LAB is essential to successful incorporation of these LAB in food systems. The conjugative genes present on the nisin transposons make it possible to transfer the nisin gene cluster to other bacteria in a nonrecombinant fashion. This has been achieved previously by Broadbent et al. (1), who used a dairy Enterococcus strain as a recipient for conjugative transfer of the nisin transposon Tn5307 from L. lactis ATCC 11454. While this transconjugant did exhibit immunity to nisin, it did not produce active nisin, as determined by standard bioassay procedures. As nisin gene expression is governed by the processes of transcription, translation, posttranslation modification, secretion, processing, and signal transduction, a block in any of these steps can sabotage nisin biosynthesis. In this study, we investigated this Enterococcus transconjugant to elucidate the cause of the nisin-production-negative phenotype and also to evaluate the feasibility of initiating nisin production by this dairy enterococcal bacterium.
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Immunity assay.
To test for immunity to nisin, overnight cultures were inoculated (1%) into 10-ml portions of M17G containing 0 to 3,000 IU of nisin (Sigma, St. Louis, Mo.) per ml. The MIC of nisin was determined after incubation for 8, 12, and 30 h.
Nisin bioassay.
Nisin activity was determined by a rapid plate method as described previously (3). Five microliters of a sample to be tested was spot inoculated onto a 0.45-µm-pore-size nitrocellulose filter membrane (Millipore Corporation, Bedford, Mass.) prewetted by immersion in 0.01 M HCl-1% Tween 80. After diffusion for 14 h at 4°C, the filters were removed, and the plates were overlaid with soft agar seeded with M. luteus as an indicator. A standard curve of nisin inhibition zones versus units of commercial nisin was drawn, and from this curve the nisin concentrations in test samples were estimated.
Trypsin digestion.
Trypsin treatment of cell extracts was carried out essentially as described by Nelis et al. (26). The reaction mixtures contained NaOH (5.3 mM) and trypsin (1 mg/ml) in 0.05 M phosphate buffer (pH 8.0).
Nisin induction experiments.
Attempts were made to induce nisin production by Enterococcus sp. strain N12ß by adding exogenous commercial nisin to growing cultures. In some cases (data not shown), nisin was added when cultures reached an optical density at 600 nm (OD600) of 0.4. The amount of nisin added was subtracted from batch nisin concentrations to calculate production by Enterococcus.
Kinetics of nisin production.
Overnight cultures of Enterococcus sp. strains N12ß and S12ß and L. lactis ATCC 11454 were inoculated (1%) into M17G containing 50 IU/ml of nisin. Samples were taken at zero time and after 2, 4, 6, 8, 10, 12, 24, and 48 h and frozen at -70°C. Samples were then tested for nisin by using the bioassay outlined above.
Reverse-phase high-pressure liquid chromatography (RP-HPLC).
Culture supernatants and cell extracts were tested for precursor and mature nisin essentially as described by Liu and Hansen (25). Assays were carried out by using a µRC C18 Sc2.1/10 column (Pharmacia Biotech, Piscataway, N.J.) and an AKTA HPLC pump and detection system (Pharmacia Biotech). Solvent A was 0.1% trifluoroacetic acid (Aldrich Chemical Co., Milwaukee, Wis.), and solvent B was 0.1% trifluoroacetic acid in acetonitrile. The detection UV wavelength was 220 nm. The gradient was 0 to 100% solvent B over 60 column volumes. Commercial nisin (Sigma) was used as a reference control, and Enterococcus sp. strain S12ß was used as a negative control.
DNA manipulations.
A template for PCR was obtained by using crude culture lysates prepared as follows. One milliliter of cells was pelleted and then agitated at the maximum speed in a MiniBeater-8 (Biospec Products, Bartlesville, Okla.) with 0.5 volume of acid-washed glass beads (diameter, <106 µm; Sigma) for 30 s. Lysates were diluted 10-2 prior to use in PCR. PCR amplifications of nisin and thyA genes were performed by using the primers indicated in Table 1. All PCRs were performed with a Robocycle (Stratagene, La Jolla, Calif.). The reaction mixtures (final volume, 50 µl) contained 1 µl of template, 1 µl of each primer (30 µM), 1 µl of deoxynucleoside triphosphates (each at a concentration of 10 mM), and 0.5 µl of Taq DNA polymerase. The amplification conditions were as follows: one cycle of 92°C for 2 min; 30 cycles of 92°C for 30 s, 55°C for 45 s, and 72°C for 1 min; and one cycle of 72°C for 3 min. Sequencing reactions were performed with an ABI Prism dye terminator cycle sequencing kit by using AmpliTaq DNA polymerase FS, and the products were separated with an ABI 377 automatic sequencer (Applied Biosystems, Foster City, Calif.).
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TABLE 1. Primers used for amplification of nisin and thyA genes
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RNA manipulations.
A modified RNA isolation procedure was used to isolate total RNA from cultures at OD600 of 0.8 to 0.9 (2). To remove any residual DNA, total RNA was treated with DNase I as recommended by the manufacturer (GIBCO BRL, Gaithersburg, Md.). The concentration of total RNA was determined with a DU-70 spectrophotometer (Beckman, Fullerton, Calif.) and was verified visually by gel electrophoresis. For RNA slot blot hybridizations, total RNA samples (0.5 µg) were transferred onto a Zeta-Probe membrane (Bio-Rad, Hercules, Calif.) by using a Bio-Dot slot blot apparatus (Bio-Rad). Probe labeling and hybridization detection kits were used according to the instructions of the manufacturer (Boehringer Mannheim, Indianapolis, Ind.).
The enzymes SuperScript II (Gibco BRL) and and Taq DNA polymerase (Promega, Madison, Wis.) were used for reverse transcriptase (RT) PCR, as described by the manufacturer. One microgram of total RNA was used as the template for RT-PCR. An identical PCR mixture with total RNA but without added RT was used as a negative control.
To quantify the amount of specific nisA mRNA transcripts, total RNA was diluted in series prior to hybridization with a nisA probe. The intensities of the hybridization signals were measured by using the densitometer capabilities of an IS-2000 digital imaging system (Alpha Innotech Corporation, San Leandro, Calif.).
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FIG. 1. Confirmation that the nisin gene cluster is present in Enterococcus sp. strain N12ß. The primers used targeted the thyA gene from Enterococcus faecalis (A), the nisA gene (B), and the nisF gene (C). Lane 1, 1-kb DNA ladder (GIBCO BRL, Rockville, Md.); lanes 2, 5, and 8, Enterococcus sp. strain N12ß; lanes 3, 6, and 9, Enterococcus sp. strain S12ß; lanes 4, 7, and 10, L. lactis ATCC 11454.
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FIG. 2. TAP-PCR DNA fingerprints of L. lactis ATCC 11454 (A), Enterococcus sp. strain S12ß (B), and Enterococcus sp. strain N12ß (C). The three lanes for each strain show the results for triplicate PCRs conducted at the annealing temperatures indicated. Molecular sizes (in kilobases) are indicated on the left.
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Investigation of posttranslational events for nisin production in strain N12ß.
The fact that Enterococcus sp. strain N12ß is immune to nisin (1) and the proposal that an immunity gene (nisI) is cotranscribed with the nisin structural, modification, transport, and processing genes (28) suggested that the nisin genes may be transcribed in this new host. If this were the case, then the block in production of active nisin by strain N12ß may be due to a posttranslational event. To investigate this possibility, RP-HPLC and standard bioassay methods were used to detect nisin or its precursor in supernatants and cell extracts with and without trypsin treatment. Trypsin can activate nisin by cleaving the prepeptide from the inactive precursor (37). However, both bioassays and RP-HPLC did not indicate that there was any active nisin (data not shown). Furthermore, there were no apparent differences between the RP-HPLC profiles of both culture supernatants and cell extracts from strain N12ß and the RP-HPLC profiles of the parent strain, S12ß (data not shown). These data suggested that the lack of nisin production by N12ß was probably not primarily due to posttranslational downstream events.
Quantification of nisin immunity in strain N12ß.
Nisin immunity is proposed to be conferred by both NisI and the NisFEG complex (29). While strain N12ß was previously shown to be immune to nisin (1), the level of immunity was never compared to that of the original parent, L. lactis ATCC 11454. A nisin immunity assay for enterococcal strains N12ß and S12ß and the L. lactis ATCC 11454 nisin transposon Tn5307 donor was therefore performed. As Fig. 3 shows, the parent Enterococcus sp. strain S12ß had a low natural resistance to nisin and could grow in the presence of up to
100 IU of nisin per ml. Strain N12ß could grow in the presence of nisin at concentrations up to nearly 1,000 IU/ml, whereas L. lactis ATCC 11454 could grow in the presence of nisin at concentrations up to 2,000 IU/ml. This suggested that Enterococcus sp. strain N12ß exhibited
50% of the immunity to nisin exhibited by the donor strain, L. lactis ATCC 11454. These data suggest that the nisABTCIP operon may not be efficiently expressed in strain N12ß.
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FIG. 3. Histogram depicting the levels of nisin immunity exhibited by L. lactis ATCC 11454 (shaded bars), Enterococcus sp. strain N12ß (open bars), and Enterococcus sp. strain S12ß (solid bars), as measured by the lack of growth after 8, 12, and 30 h of incubation.
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FIG. 4. (A) Investigation of nisA transcription by RNA slot blot hybridization with a nisA probe. Each slot contained 5 µg of total RNA. Slot 1, L. lactis ATCC 11454; slot 2, Enterococcus sp. strain S12ß; slot 3, Enterococcus sp. strain N12ß; slot 4, Enterococcus sp. N12ß grown in the presence of a subinhibitory nisin concentration; slot 5, Enterococcus sp. strain S12ß grown in the presence of added nisin. (B) RT-PCR with nisA-specific primers of nisA transcription. Lanes 1 to 4, negative controls without added RT; lanes 1 and 5, L. lactis ATCC 11454; lanes 2 and 6, Enterococcus sp. strain N12ß; lanes 3 and 7, Enterococcus sp. N12ß grown in presence of exogenous nisin; lanes 4 and 8, Enterococcus sp. strain S12ß; lane M, 100-bp DNA marker (Bio-Rad).
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Induction of nisA transcription in Enterococcus sp. strain N12ß results in production of active nisin.
To ascertain whether N12ß produced active nisin in the presence of added exogenous nisin, a quantitative bioassay was performed with both strains N12ß and S12ß following induction by added nisin. Strain S12ß was used as a negative control because its genetic background was otherwise identical to that of strain N12ß. As Fig. 5 shows, the supernatant from an induced culture of strain S12ß did not inhibit the growth of the indicator organism M. luteus, while a clear inhibition zone was observed with supernatant from a culture of strain N12ß. This indicated that active nisin was produced by strain N12ß following induction by exogenous nisin, albeit at a significantly lower level than in L. lactis ATCC 11454.
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FIG. 5. Bioassay for the production of nisin by L. lactis ATCC 11454 and enterococcal strains S12ß and N12ß following growth in M17G containing 50 IU of added nisin per ml.
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FIG. 6. Kinetics of nisin production by L. lactis ATCC 11454 ( ) and Enterococcus sp. strain N12ß ( ).
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60% (Fig. 8). Concomitant measurements of nisin production by strain N12ß also showed that there was an approximately linear increase, but maximum induction with 200 IU of nisin per ml resulted in only
30% of the amount produced by L. lactis ATCC 11454 (Fig. 8). These studies indicate that the expression of active nisin from the Tn5307 transposon in Enterococcus strain N12ß is similar to its expression in L. lactis ATCC 11454, except that significantly more external inducer (nisin) is required to activate the NisRK two-component induction system. |
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FIG. 7. Slot blot Northern hybridization with a nisA probe of total RNA isolated from Enterococcus sp. strain N12ß following induction by different amounts of exogenous nisin. Slot 1, no added nisin; slot 2, 20 IU of added nisin per ml; slot 3, 40 IU of added nisin per ml; slot 4, 100 IU of added nisin per ml; slot 5, 200 IU of added nisin per ml.
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FIG. 8. Effect of increasing concentrations of added nisin on induction of nisA transcription and production of active nisin by Enterococcus sp. strain N12ß. The values are percentages of the maximum levels obtainable by L. lactis ATCC 11454.
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The fact that strain N12ß demonstrated immunity to nisin suggested that the nisin genes were likely expressed in this strain. Therefore, one possible explanation for the lack of active nisin was that the final step of precursor processing was not functioning, resulting in a buildup of modified but inactive precursor nisin. As trypsin has the same cleavage specificity as the nisin protease (37), it was quite feasible to investigate this possibility. However, trypsin treatment of both culture supernatants and cell extracts indicated that no modified precursor existed in strain N12ß cultures. RP-HPLC profiles of both culture supernatants and cell extracts confirmed that no peaks corresponding to nisin were present. The results also indicated that strain N12ß had a profile similar to the profile of its parent strain, S12ß, and did not produce a detectable peak at the expected position for precursor nisin. These results therefore suggested that problems in expression of the nisin structural gene operon may occur.
To investigate this possibility, transcription of nisA was examined by using Northern hybridization and RT-PCR. Both of these techniques confirmed that transcription of nisA in strain N12ß was blocked. This was surprising as one of the four immunity genes, nisI, is also in the same transcription operon as nisA. However, it has previously been determined that partial but significant nisin immunity could still occur in the absence of NisI (29). Quantification of the nisin immunity exhibited by strain N12ß revealed that it was only
50% that of L. lactis ATCC 11454 (Fig. 3), suggesting that sufficient NisI may not be present. However, as the other three nisin immunity genes, nisFEG, are transcriptionally regulated like the nisA promoter (28), it seems unlikely that their transcription would not also be affected. A possible explanation for the immunity exhibited by strain N12ß was that the addition of nisin to the culture during the test for immunity stimulated transcription of the nisin promoters via the two-component NisRK regulatory system. This is plausible given our current understanding of regulation of nisin expression in L. lactis (9, 28), and it suggests that addition of exogenous nisin to cultures of strain N12ß may stimulate transcription of the nisin promoters and result in the production of active nisin.
Investigation of this possibility revealed that nisA transcription could be restored in strain N12ß following nisin induction (Fig. 4), together with restoration of nisin production (Fig. 5). This confirmed that the NisRK signal transcription system was working in Enterococcus, albeit at a much lower efficiency than in L. lactis. Interesting, the kinetics of nisin production were very similar for Enterococcus and L. lactis (Fig. 6), suggesting that the expression mechanisms were similar in the two backgrounds, except that they were less efficient in Enterococcus. Induction of cultures with different amounts of nisin revealed an approximately linear relationship between the amount of added nisin and the levels of both nisin transcription and production (Fig. 8). However, addition of nisin at concentrations up to 200 IU/ml could not fully restore nisA transcription or nisin production in N12ß. This indicated that a much higher concentration of the nisin signal was required to stimulate the NisRK signal transduction system in Enterococcus than in L. lactis. It is also noteworthy that an induced culture of strain N12ß quickly lost the ability to produce nisin when it was subcultured at levels up to 20% in a medium without added nisin (data not shown), further substantiating the lower sensitivity of the NisRK two-component induction system in the Enterococcus background. This is in contrast to the results obtained with L. lactis ATCC 11454 cultures, which can be diluted 10-9 and still continue to produce nisin (Li and O'Sullivan, unpublished data). Production of bacteriocins that are regulated by two-component systems in other lactic acid bacteria can also be hampered by subculturing with diluted inocula. These include plantaricin production by Lactobacillus plantarum C11 (10), enterocin A and B production by Enterococcus faecium CTC492 (27), and carnobacteriocin production by Carnobacterium piscicola LV17 (30). However, in these cases the reason was limited amounts of the inducer. In the case of N12ß, the reason appears to be an inefficient signal transfer from the external inducer, nisin, to the internal response regulator, NisR.
While the reason for the inefficient functioning of the NisRK two-component system in Enterococcus sp. strain N12ß is presently unknown, there are a number of possible explanations. One possibility is that there are some other unknown factors needed for expression of the nisin genes in L. lactis that were not transferred into strain N12ß from the donor, L. lactis ATCC 11454. Previous studies have linked the loss of nisin production to the loss of a plasmid (15, 24, 34). However, in these studies it was not determined if the nisin transposon remained in the plasmid-cured strains. Another possible reason for inefficient signal transduction is cross talk between two different two-component systems in the host. Different two-component regulatory systems that exhibit extensive similarity in protein structure can each affect the signal transduction of the other (14, 38). For example, the kinase sensor protein VanS of the vancomycin resistance regulon was shown to activate PhoB (regulator protein of phosphate synthesis) in Escherichia coli (14). It is therefore possible that there is some signal competition among different two-component systems in strain N12ß, which impedes full expression of the nisin genes.
It was also notable that while induction of Enterococcus sp. strain N12ß with increasing amounts of nisin gave increasing amounts of nisA transcription, up to a maximum of nearly 60% of the amount in L. lactis ATCC 11454, the amounts of active nisin detected by the bioassay were significantly lower (maximum,
30% of the amount in L. lactis ATCC 11454) (Fig. 8). Trypsin treatments of cell homogenates did not release any further nisin, indicating that unprocessed nisin was not trapped within the cells (data not shown). HPLC analysis of culture supernatants could not detect any nisin (or other) peaks, as the amount of nisin present was less than the sensitivity of the HPLC assay used (0.2 IU/µl) (data not shown). The smaller amount of active nisin compared to the transcription amount was probably not due to a partially modified nisin peptide, as prior studies have shown that a lack of modification by either of the two modification enzymes, NisB and NisC, does not result in a bioactive peptide. Specifically, Ra et al. (29) obtained an in-frame deletion in nisB which eliminated nisin production, but transcription of the nisin genes could be partially restored following external induction with nisin, analogous to the situation in Enterococcus sp. strain N12ß in this study. However, active nisin could not be restored in the induced nisB mutant, confirming that a lack of NisB modification functions does not result in a bioactive peptide. Similarly a mutation in nisC eliminated transcription, but transcription could be partially restored following external induction with nisin. However, the mutation of the induced nisC mutant did not result in production of a bioactive peptide or buildup of an intracellular unprocessed peptide. The requirement for both NisB and NisC modifications to obtain bioactivity strongly suggests that the bioactivity observed with Enterococcus sp. strain N12ß is due to mature nisin. The reduced production compared to the level of transcription may be due to translation differences and/or mRNA processing differences between the Enterococcus and Lactococcus backgrounds.
In conclusion, Enterococcus sp. strain N12ß does not produce nisin because the efficiency of the NisRK signal transduction system is significantly lower than that in L. lactis, resulting in a lack of transcription of the nisin genes. Uncovering the reason for inefficient NisRK signal transduction in Enterococcus is necessary to enable efficient nisin production in this heterologous host.
This work was supported in part by Dairy Management Inc. and by the Minnesota Agricultural Experimental Station.
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