Previous Article | Next Article ![]()
Applied and Environmental Microbiology, January 2003, p. 170-176, Vol. 69, No. 1
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.1.170-176.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Bioengineering, Tokyo Institute of Technology, Midori-ku, Yokohama 226-8501, Japan
Received 29 April 2002/ Accepted 4 October 2002
|
|
|---|
200 h). Mu mutant cells could coexist with bacteriophage PP01 in batch culture. Concentrations of the Mu cells and bacteriophage PP01 increased together. The appearance of mutant phage, which showed a different host range among the O157:H7 escape mutants than wild-type PP01, was also detected in the chemostat culture. Thus, coevolution of phage and E. coli O157:H7 proceeded as a mutual arms race in chemostat continuous culture. |
|
|---|
Previous reports also discussed the role of bacteriophage in reducing enteropathogenic bacteria in live animals and gastrointestinal models (2, 4, 12, 19, 23, 25). It is known that the elevated levels of virulent phage in human feces correlate with diseased conditions (8). Thus, phage may play an important role in affecting pathogenic bacteria in intestinal environments.
The emergence of infectious disease caused by drug-resistant bacteria requires alternatives to conventional antibiotics (1, 3, 6, 26). Phage therapy is one possible option, and it can provide an economical tool for controlling pathogens in the intestinal tract without affecting the viability of other normal flora (14, 15). Three virulent E. coli O157 antigen-specific phages, designated KH1, KH4, and KH5, have been analyzed in an attempt to control E. coli O157:H7 in batch culture (14). However, the population dynamics of the phage and its host organism were not analyzed. The relationships between predators and prey may bring about coevolution as the result of an endless arms race between host cell defenses and phage counterdefenses. In fact, some of the failures of phage therapy were due to bacterial mutations leading to resistance to phage infection (1, 3, 6, 26).
However, chemostat cultures have been used as in vitro models of the gut microbial ecosystem and can reproduce many important properties of the intestinal flora (5, 15, 16, 27). In this study, we used a continuous culture of E. coli O157:H7 with its specific virulent phage, named PP01 (21), to investigate the coevolutionary change in E. coli O157:H7 and a virulent bacteriophage specific to it.
|
|
|---|
Phage infection in continuous and batch culture.
In continuous culture, bacterial and phage cultures were grown in Luria-Bertani (LB) broth. A peristaltic pump was used to supply fresh medium and remove spent medium from the culture vessel at the same flow rate. The culture volume was approximately 30 ml, and the dilution rate was altered by changing the pump running speed. After inoculation with E. coli O157:H7 ATCC 43888, the culture was kept at 37°C with stirring and maintained overnight to establish a steady-state condition. Bacteriophage PP01 was then added to the culture with a multiplicity of infection (MOI) of approximately 0.01.
In batch culture, E. coli O157:H7 ATCC 43888 was cultured overnight in 2 ml of LB broth at 37°C with shaking (120 rpm). Three hundred microliters of the initial culture broth was inoculated into 30 ml of fresh LB broth. The optical density of the medium at 600 nm (OD600) was measured to estimate cell lysis. Bacteriophage PP01 infection with an MOI of 2 was performed at an OD600 of 0.1. Additionally, this method was applied to the evaluation of PP01-induced lysis of the mutant cells mentioned below.
Determination of bacterium and phage concentration.
The continuous culture was periodically sampled to determine the concentrations of bacteria and phage. The samples were centrifuged at 12,000 x g for 5 min at 4°C to separate the supernatant and cell pellet. The titer of the phage in the supernatant was determined by serial dilution with sterile SM buffer (10 mM MgSO4, 100 mM NaCl, 0.01% gelatin, 50 mM Tris-HCl [pH 7.5]) followed by plaque assay on lawns of E. coli O157:H7 ATCC 43888. The cell pellets were washed, resuspended, and diluted with phosphate-buffered saline, and the viability of cells was determined by spreading on LB agar plates. All assays were done in triplicate.
Isolation and characterization of mutant cells in the continuous culture.
Several morphologically distinct types of colonies were apparent on the plates used for determining the bacterial cell count. Representative samples of each were transferred with toothpicks into liquid LB broth. After confirming that these cultures were phage free, these isolates were analyzed for resistance to bacteriophage PP01 by the spot test assay. Plaques formed on susceptible isolates and did not form on resistant strains. In susceptible isolates, the efficiency of plating (EOP) of bacteriophage PP01 was estimated by comparing the number of plaques with those of wild-type (WT) E. coli O157:H7 ATCC 43888.
Outer membrane proteins of the isolated mutants were purified as previously described (21), separated on a 12% polyacrylamide gel containing sodium dodecyl sulfate (SDS) and 4 M urea, and stained with Coomassie brilliant blue R-250. Lipopolysaccharide (LPS) was prepared by using the protocol described by Slauch et al. (24). LPS was separated on a 15% polyacrylamide gel containing SDS and detected with two-dimensional Silver Stain II (Daiichi Pure Chemicals). For O-antigen detection, the same LPS samples were run on a 15% polyacrylamide gel containing SDS and electroblotted on an Immobilon-P transfer membrane (Millipore). Peroxidase-labeled affinity-purified antibody to the E. coli O157:H7 antigen (Kirkegaard & Perry Laboratories, Inc.) and the ECL Western blotting detection reagent (Amersham Pharmacia Biotech) were used for light emission detection.
Analysis of phage host-range mutation and isolation of host-range mutants.
The host range of phages in the continuous culture was examined by a series of plaque assays with the mutant isolates. Supernatants from samples of the continuous culture were used as phage lysate, and the number of plaques formed on lawns of the mutant bacterial strains was compared with that of the WT E. coli O157:H7 ATCC 43888. The relative phage titer was defined as the ratio of plaques on each mutant lawn to that on the WT E. coli strain. At time points of 56, 70, and 215 h, analysis revealed phage with novel properties compared to phage from previous time points. Plaques from these time points were isolated by picking the plaque with a micropipette tip, culturing the phage-containing agar overnight in liquid LB medium, and replating the liquid medium on LB agar plates with lawns of susceptible bacteria. In this way, the phages M01a, M01b, and M01f were isolated from the continuous culture at 56, 70, and 215 h, respectively. The host range of each of these phage mutants against the various bacterial mutants derived from E. coli O157:H7 ATCC 43888 was determined by the spot test assay.
|
|
|---|
![]() View larger version (21K): [in a new window] |
FIG. 1. Bacterium and phage concentration in continuous culture. (a) D = 0.327 h-1; (b) D = 0.876 h-1. Closed squares indicate E. coli O157:H7, and open circles indicate PP01 and derivative phage. The appearance of alternate colony shapes on LB agar was used to track mutant bacterial strains. The arrows below each graph represent the spans of time for which a given bacterial mutant was detectable in the culture. Abbreviations used for the mutant strains reflect their shapes: strains ending in the letter S represent entire, round colonies, and strains ending in the letter R had irregular colonies. The Mu strains were highly mucoid colonies. Wt indicates WT E. coli O157:H7. The dilution rate from which a given strain was isolated was indicated by a superscript L (D = 0.327 h-1) or H (D = 0.876 h-1), which represents the dilution rate from which the strains were isolated. Strains present as less than 1% of the total bacterial CFU were not detectable. Bacterium and phage concentrations are measured on the y axes.
|
![]() View larger version (95K): [in a new window] |
FIG. 2. Digital photographs of representative mutant cell colonies taken after 18 h of incubation. (a) WT; (b) RH mutant; (c) MuH mutant; (d) SsH mutant. Bars, 5 mm.
|
PP01 sensitivity and bacterial envelope profile of dominant cells.
Mutants from the high-dilution-rate experiment were selected for further study via phage sensitivity analysis and envelope profiling. The dominant cells showed various EOP values toward bacteriophage PP01 (Table 1). The EOP values for the SH, NrH, SsH, and FrH mutants were too low (<10-7) to be evaluated. In both the CrH and MuH mutants, the value was ca. 0.5, and in the RH mutant, the value was 0.05. In addition, the plaques on the RH, CrH, and MuH mutants were turbid and distinctly different from the clear plaque on the WT strain.
|
View this table: [in a new window] |
TABLE 1. Susceptibility of mutant cells to WT PP01
|
![]() View larger version (71K): [in a new window] |
FIG. 3. Bacterial envelope profiling of mutant cells. (a) Outer membrane proteins detected by Coomassie brilliant blue R-250 staining; (b) LPS detected by immunoblotting with antibody to E. coli O157:H7.
|
Silver staining of LPS gels enabled detection of O-antigen-free LPS, i.e., only the R core region and the lipid A complex. This analysis revealed that the R core and lipid A complex in the Ss mutant were smaller than those of normal strains (data not shown). The Ss mutant showed complete resistance to PP01 in spite of OmpC production. According to the results mentioned above, not only is OmpC required for PP01 infection but the R core and lipid A components of LPS are also required for PP01 infection.
Mu mutant lysis by bacteriophage PP01 in batch culture.
An approach to a seeming equilibrium of bacterium and phage populations was observed after the emergence of the MuH mutant, which suggested that the MuH mutant has an ability to coexist with PP01. MuH cells appeared at 56 h postinfection (at a D of 0.867 h-1) and persisted until the end of the experiment (
200 h) (Fig. 1b). In batch culture, the culture turbidity of the WT strain decreased after PP01 addition at an MOI of 2 (Fig. 4a), and phage concentration increased during this time. However, with the MuH mutant, the culture turbidity increased after PP01 infection, though more slowly than without PP01 (Fig. 4b). The phage concentration steadily increased together with that of the bacteria, in stark contrast to the WT case. Thus, MuH mutants seemed to grow with only partial cell lysis by the bacteriophage PP01. This observation may explain the population equilibration mentioned above.
![]() View larger version (26K): [in a new window] |
FIG. 4. E. coli O157:H7 lysis by bacteriophage PP01. (a) WT; (b) MuH mutant. The culture was incubated at 37°C and infected with bacteriophage PP01 (closed circles) at an MOI of 2 at the time indicated by the arrow. Open circles are negative controls with no phage. The bacteriophage PP01 concentration (concn) was also measured (closed diamonds).
|
![]() View larger version (42K): [in a new window] |
FIG. 5. Analysis of phage host-range mutation. Samples of a continuous culture of E. coli O157:H7 and bacteriophage PP01 were taken at the indicated times, and the supernatants were stored and used for plaque assay on the mutant bacterial strains also isolated from the continuous culture. The titer of the WT strain (see text) was defined as 1.0 at all time points.
|
|
View this table: [in a new window] |
TABLE 2. Turbidity of plaque formation of PP01 and its host-range mutants by spot test assay
|
|
|
|---|
Bacterial and phage mutants evolve in a coevolutionary arms race.
Following an initial, rapid decrease in viable cell count, resistant bacteria appeared and began to flourish. But susceptibility to phage was not completely eliminated. Phage continued to coexist with the bacteria in the culture. This initial coexistence was not stable, and oscillations in the concentrations of both phage and bacteria were observed. Analysis revealed the recurring appearance of new, distinct bacterial mutants (Fig. 2 and 3 and Table 1) at times spread throughout the 200-h time period of the culture. Phage host-range mutants were also observed (Fig. 5). The bacterial RH and then the MuH mutant strains were dominant at different times in the 200 h of continuous culture at the higher dilution rate, despite both expressing OmpC, having a similar LPS profile to the WT strain, and being partially susceptible to phage lysis. The FrH mutant strain, completely resistant to both PP01 and its derivative bacteriophages, either may have not had enough time to establish dominance or may have grown too slowly to do so, perhaps because its altered LPS and Omp profiles were unfavorable for growth. The results show that OmpC and LPS are not the only factors involved in PP01 adsorption and infection to the bacterial surface. This is consistent with previous results with E. coli with T-even phages, some of which can use both OmpC and LPS as receptors (11).
Both the phage and bacteria seemed to be continuously evolving in a mutual, ever-escalating arms race. Previous chemostat studies have not shown this behavior (5, 15, 16). Prior studies mainly used minimal medium, with glucose as the sole carbon source, at a concentration of less than 1 g liter-1. They were focused on modeling bacterium-phage systems in natural ecosystems, where resources are relatively scarce. In contrast, resources are relatively abundant in the human gastrointestinal tract. Bacterial density is very high (20). To represent this fact, LB broth, a very rich medium that can support very high cell densities, was used in this study. Therefore, in environments of high biodensity, such as the human gastrointestinal tract, a mutual arms race may be a significant factor in phage and bacterial evolution.
Mechanisms of coevolution.
The first bacterial mutants to appear were the R and S strains, which had altered colony shapes, LPS profiles, and OmpC expression compared to the WT strain. Phage host-range mutants appeared which could lyse the R and S strains, causing these strains to disappear from the culture. The fact that these mutants could lyse the non-OmpC-expressing strain S implies that the receptor of these host-range mutants is most likely altered. The Mu, Nr, and Cr bacterial mutants appeared next in the culture. The LPS expression of all of these strains was different from that of the WT, especially that of strain Cr. Strain Nr also had a different Omp expression profile (Fig. 3). Both Mu and Cr expressed OmpC. This is further evidence that LPS is involved in the binding of PP01 to E. coli O157:H7. Altered LPS or other cell envelope structures may act as a barrier, preventing phage access to OmpC.
These findings show that coevolution of phage and the clinically relevant bacterium E. coli O157:H7 can and sometimes does proceed as a mutual arms race. Several phenotypically different O157:H7 bacterial mutants may appear. Development of a successful phage therapeutic against this enteropathogen must address the emergence of all of these mutant strains. Additionally, this study shows that at least in some cases, phage binding and infection of E. coli O157:H7 is not controlled only by a single receptor but that many features of the target cell envelope may be important. Future studies should address the DNA alterations responsible for the altered phenotypes of the mutants. Also, to test the generality of these results, our experiments should be extended to other O157:H7-specific phages. Only through understanding and controlling the emergence of phage-resistant bacteria can bacteriophage become a clinically useful tool.
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»