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Applied and Environmental Microbiology, January 2003, p. 468-474, Vol. 69, No. 1
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.1.468-474.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Apovia AG, D-82152 Martinsried, Germany,1 Institute of Microbiology and Genetics, University of Vienna, UZAI, A-1090 Vienna,2 BIRD-C GmbH & Co. KEG, A-1080 Vienna, Austria3
Received 19 June 2002/ Accepted 31 October 2002
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X174 gene E in gram-negative bacteria results in lysis of the bacteria by the formation of a transmembrane tunnel structure built through the cell envelope complex. Production of bacterial ghosts is routinely monitored by classical microbiological procedures. These include determination of the turbidity of the culture and the total number of cells and the number of reproductive cells present during the time course of growth and lysis. Although conceptually simple, these methods are labor intensive and time consuming, providing a complete set of results after the determination of viable cell counts. To avoid culturing methods for bacterial growth, an alternative flow cytometric procedure is presented for the quantification of ghosts and polarized, as well as depolarized, nonlysed cells within a culture. For this method, which is based on the discriminatory power of the membrane potential-sensitive dye bis-(1,3-dibutylbarbituric acid) trimethine oxonol, a staining protocol was developed and optimized for the maximum discrepancy in fluorescence between bacterial ghosts and viable cells. The total quantitative analysis procedure takes less than 2 min. The results derived from classical or cytometric analyses correlate with respect to the total cell numbers and the viability of the culture. |
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X174 lysis gene E, a transmembrane tunnel structure is formed in consequence of the oligomerization of protein E. Driven by the high osmotic pressure inside the cell, the cytoplasmic content is expelled into the surrounding medium, thus giving rise to empty bacterial cell envelopes. Except for the lysis hole, the morphology of the bacteria, including all cell surface structures and the cell membranes, is not affected by the lysis event (23). As this procedure is applicable to a diverse spectrum of gram-negative bacteria, the ghosts are under investigation as genetically inactivated candidate vaccines (4, 9) and as carriers of foreign antigens (3, 10). The procedures for monitoring and characterizing the lysis process are based mainly on classical methods. The lysis of the first bacterial cells is associated with a decrease in the turbidity of the culture, which can be detected by measuring the optical density. As a consequence, the viability of the lysing culture decreases drastically, to reach a minimum at the endpoint of lysis. For E. coli, a correlation between the decrease in optical density (OD) and the reduction of viable cell counts was determined, although it was found not to be accurate. To this day, classical microbiological procedures, like plating or the use of counting chambers, are used to determine the amount of residual viable (reproductive) bacteria and the total number of cells (including ghosts) in time course experiments. As these parameters are critical for the characterization of the growing or lysing culture, a method is desired for the online determination during the lysis process. The rapid and accurate assessment of these parameters would help to optimize the production procedure individually for each strain, resulting in greatly shortened fermentation periods and in ghost fractions containing the minimum number of residual viable cells.
Flow cytometric analysis of bacterial cultures is characterized by the rapid collection of multiple parameters of cells and could therefore be applicable for generating significant quantitative data at various time points during ghost production. The availability of a diverse spectrum of "vital stains" facilitated the cytometric discrimination of certain subpopulations within a bacterial culture in correlation with the physiological status of the cells (1, 14, 15, 18). The cell membrane represents a target structure for the anionic fluorescent dye bis-(1,3-dibutylbarbituric acid) trimethine oxonol [DiBAC4(3)]. The uptake of this membrane potential-sensitive dye is restricted to depolarized cells or cells with disrupted membranes (2, 12). The fluorescent dye accumulates inside the cell by binding to lipid-containing intracellular components, e.g., the bacterial membranes (5). Intact cells with polarized membranes exclude the dye and therefore remain nonfluorescent.
Recently, flow cytometric sorting was applied to separate remaining nonlysed bacteria from E. coli ghost preparations (8). In the present work, a cytometric approach is presented to evaluate the applicability of DiBAC4(3) to support the cytometric discrimination between ghosts and viable and nonlysed but inactivated cells. The results of flow cytometric online quantification of the detected populations are compared to the data obtained by classical microbiological techniques.
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Classical microbiological procedures for cell enumeration.
A counting chamber (Neubauer; chamber depth, 0.02 mm; minisquare area, 0.0025 mm2; Brand GmbH & Co. KG, Wertheim, Germany) was used to quantify the total number of cells by direct microscopy. The average cell count per minisquare multiplied by the reciprocal of the corresponding volume in milliliters equaled the concentration of cells in the diluent (7). To determine the number of reproductive bacteria, the standard procedure of plating serial dilutions on nonselective agar plates was used. The plates were incubated for 15 h at 28°C to permit permissive conditions with regard to the expression system of gene E.
Staining protocol.
The membrane potential-sensitive dye DiBAC4(3) (Molecular Probes, Leiden, The Netherlands) was dissolved in dimethyl sulfoxide to prepare a 1 mM stock solution, which was stored at -20°C. For samples taken at various time points during ghost production or analyzed subsequently to further chemical or heat treatments, 10 µl of bacterial culture was added to 979 µl of FACS-FLOW solution (Becton Dickinson, Heidelberg, Germany) and supplemented with 10 µl of a solution containing fluorescent alignment beads (2.5 µm; extinction, 488 nm; emission range, 515 to 660 nm; Molecular Probes) at a concentration of 1.3 x 108 beads/ml. The mixture was completed by the addition of 1 µl of the DiBAC4(3) stock solution to give a dye concentration of 1 µM. Subsequently, the samples were analyzed by flow cytometry with no further incubation step.
In calibration experiments, 100 µl of a ghost preparation (stored in 0.9% NaCl solution at 4°C), log-phase growing cells of E. coli NM522(pML1), or a mixture of both was stained with DiBAC4(3) to give the desired dye concentration in a final volume of 1 ml of FACS-FLOW. The preparations were either analyzed immediately or incubated at room temperature for 1 to 20 min prior to flow cytometric analysis.
Flow cytometric analysis.
All experiments were performed with a FACScalibur flow cytometer (four-color system; Becton Dickinson) equipped with an air-cooled laser providing 15 mW at 488 nm and the standard filter setup. For acquisition and analysis of data, the CellQuest software package (version 3.3; Becton Dickinson) was used. Forward scatter (FSC), right-angle light scatter (side scatter; SSC), and fluorescence were collected as pulse height signals (four decades of a logarithmic scale). The green fluorescence of DiBAC4(3) was collected in the FL-1 channel (530 ± 15 nm), whereas the fluorescence of the alignment beads was collected in the FL-2 channel (585 ± 21 nm). Detector voltages were set to "E02"/gain 1 (FSC), 582 V/gain 1 (SSC), 600 V/gain 1 (FL-1), and 550 V/gain 1 (FL-2). SSC served as the primary detection parameter (threshold, 230). Cell populations were gated on the basis of FL-1 versus SSC, thereby excluding the background signal and debris. Because the FACScalibur flow cytometer does not quantify the analyzed volume, alignment beads were used as an external standard in quantitative assays. A 10-µl bead solution volume with a known concentration (1.3 x 108/ml) was added to a 990-µl cell suspension (in FACS-FLOW) prepared for flow cytometry. As the cytometric analysis was stopped after 1.3 x 104 alignment beads were counted, the corresponding volume of analyzed FACS-FLOW solution could be calculated as 10 µl, which equaled 0.1 µl of the original bacterial culture, which was investigated for each sample. With this 100-fold dilution of the original growing culture, the maximum flow rate could be limited to 3,500 bacterial particles per second during quantitative assays.
Chemical and heat treatment of E. coli.
For all of the procedures described in this section, cells of E. coli NM522(pML1) grown at 28°C until mid-log phase were used. To portions of the bacterial culture, either ethanol (final concentration, 20% [vol/vol]), formaldehyde (final concentration, 0.1% [vol/vol]), the antibiotic ampicillin (final concentration, 1 mg/ml), the uncoupler 2,4-dinitrophenol (final concentration, 2 mM; Sigma-Aldrich, Taufkirchen, Germany), or purified pore-forming colicin E1 (final concentration, 55 U/ml; Sigma-Aldrich) was added. For 2,4-dinitrophenol, the cells were washed and stored in a solution of 0.9% NaCl prior to treatment. The bacterial samples were incubated for 1 h at 28°C with slow agitation, except the colicin E1-treated culture, which was incubated for only 30 min. An aliquot of the growing E. coli cells was heat treated at 70°C for 20 min. All of the treatments described in this sectionexcept for dinitrophenolcompletely or nearly abolished reproduction, which was confirmed by plating indicating a reduction in the number of reproductive cells of at least 6 orders of magnitude. For the protonophore 2,4-dinitrophenol, a concentration and incubation conditions were chosen that had been demonstrated to result in destruction of the transmembrane proton motive force (21). Treatment of E. coli with the uncoupler was accompanied by only a minor reduction in the rate of reproduction (<10%), as determined via plating. The protocol for preparation of the outer membrane fraction, originally developed for Haemophilus influenzae by Lam and colleagues (13), was applied to E. coli NM522(pML1) in an unmodified manner. Subsequent to heat or chemical treatment, all samples were subjected to DiBAC4(3) staining and flow cytometric analyses.
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FIG. 1. Flow cytometric analysis of a mixture of log-phase growing cells and bacterial ghosts of E. coli NM522(pML1). The FSC and SSC of 105 bacterial particles were acquired and are presented as a contour plot excluding debris and the background signal.
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FIG. 2. Cytometric analysis of DiBAC4(3)-derived green fluorescence of log-phase growing cells and bacterial ghosts of E. coli NM522(pML1). Ghosts or cells were incubated separately with DiBAC4(3) at concentrations ranging from 0.01 to 5 µM. Cytometric analysis was performed immediately (gray bars) after dye addition or after an incubation period of 1 (bars with thin black stripes), 5 (black bars), 10 (white bars), or 20 (bars with thin white stripes) min. For each individual analysis, the fluorescence of 104 ghosts or cells was quantified. The dye concentration is given in micromolar units, whereas the mean values of green fluorescence are presented in arbitrary units (a.u.).
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FIG. 3. Cytometric online monitoring of bacterial ghost production of E. coli NM522(pML1). Bacteria were grown at 28°C to mid-log phase and then shifted to 42°C for lysis induction [0 min (Shift)]. During the time course of 3 h, various samples were collected and analyzed cytometrically after DiBAC4(3) staining. The bacterial particles within 0.1 µl of the original culture were characterized by means of light scatter and green fluorescence. The sampling time points indicated refer to time points postinduction of lysis [0 min (Shift)]. During ghost production, three populations of bacterial particles were detected: nonlysed, polarized cells (A); nonlysed, depolarized cells (B); and bacterial ghosts (C). The flow cytometric analysis data are presented as three-dimensional plots (SSC versus fluorescence, both on a logarithmic scale) excluding debris and the background signal.
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FIG. 4. Flow cytometric characterization of E. coli NM522(pML1) with regard to SSC and DiBAC4(3)-derived fluorescence after chemical and heat treatment and comparison to the bacterial populations (a) detected 20 min after lysis induction: nonlysed, polarized cells (A); nonlysed, depolarized cells (B); and bacterial ghosts (C). (Note: panel a corresponds to Fig. 3, +20 min.) Log-phase growing cells were treated with heat (b), ethanol (c), 2,4-dinitrophenol (d), pore-forming colicin E1 (e), formaldehyde (f), or ampicillin (g). An aliquot of growing cells was subjected to a procedure developed by Lam and colleagues (13) for the preparation of outer membrane fractions of H. influenzae (h). The cytometric analysis data, which are derived from 104 bacterial particles (b to h) or the particles within 0.1 µl of the lysing culture (a), are presented as contour plots (SSC versus green fluorescence in arbitrary units [a.u.], both on a logarithmic scale) excluding debris and the background signal.
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For all three bacterial subpopulations detected during ghost production, regions for cytometric enumeration could be defined, as they were clearly separated from each other and from the background or debris. Depending on the sampling time point, the cytometrically determined absolute cell count ranged between 1 x 104 and 3.2 x 104 per run, which equaled the total number of cells in a 0.1-µl culture volume. During the growth period, the calculated total number of cells increased from 1 x 108 to 2.1 x 108/ml (Fig. 5b) whereas the ratio of polarized cells in these samples increased from an initial 86 to 96%. In parallel, the ratio of cells belonging to one of the DiBAC4(3)-stained (depolarized) populations decreased from 14 to 4%. The results obtained by classical enumeration procedures reflected the same trend (Fig. 5a): increases in the total number of cells and the number of reproductive cells within orders of magnitude similar to those determined via cytometry.
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FIG. 5. Comparison of quantitative analyses of ghost production by classical microbiological procedures (a) and flow cytometry (b). E. coli NM522(pML1) was grown at 28°C to mid-log phase and then shifted to 42°C for lysis induction at the time indicated by arrows. During the 3-h time course, OD600 (closed circles on dotted lines) was monitored and various samples were collected and analyzed to determine the total number of cells ( ) and the number of reproductive bacteria ( ) by classical procedures. Flow cytometric analysis included determination of the total number of cells ( ); the number of nonlysed and polarized () or nonlysed but depolarized cells ( ); and the number of ghosts ( ). The data used to quantify the viable (reproductive or polarized) bacteria, derived from the classical or flow cytometric analyses, are presented separately (c). Bacterial numbers are shown as counts per milliliter. The sampling time points indicated refer to time points postinduction of lysis (0 min).
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When E. coli was subjected to certain chemical or physical treatments, the cells treated with heat, ethanol, or 2,4-dinitrophenol best reflected the cytometric properties of the depolarized but nonlysed cells detectable during lysis. Heat (11) and ethanol (16) were shown to have a membrane-disrupting effect on gram-negative bacteria, whereas treatment with dinitrophenol led to cell depolarization by uncoupling of oxidative phosphorylation (6). As the population of depolarized cells was mainly detectable within a short span of time after the induction of gene E expression and almost completely disappeared when ghosts made up the majority of cellular particles, we suggest that this population represents an intermediate stage within the initial lysis phase. It is assumed that protein E integrates into the cytoplasmic membrane, which causes the collapse of the transmembrane potential (22) as the first step in the protein E-mediated lysis process. At the time point of minimum culture turbidity, the ratio of nonlysed, depolarized cells was roughly 1%, which correlated well with the results of a recent cytometric study (8) in which nonlysed, nonreproductive bacteria were shown to represent 1% of the total cell number within an E. coli(pML1) ghost preparation.
One of the most prominent differences between the cytometric and classical analyses becomes apparent with the dramatic decline of 96% in the number of reproductive bacteria determined via plating 10 min after lysis induction. Although the cytometric approach reflected the onset of lysis at the same time point, only a minor reduction of 5% in the number of polarized cells could be observed. In the experiments performed, the majority of polarized cells were detectable for longer time periods compared to the reproductive cells (Fig. 5c). As the cytometric classification of the bacteria reflects the actual physiological status of the cells immediately after sample preparation, this approach is more accurate than plating, where single cells have to undergo numerous cell divisions to become visible as a colony. The absolute numbers of polarized or reproductive bacteria ranged within the same order of magnitude, although they were fourfold lower for the latter one when reaching minimum values, whereas samples taken prior to lysis induction gave almost identical numbers. It has been reported that starving or stressed bacteria are restricted in their reproductive ability to form colonies on agar plates even if they maintain a polarized membrane (12, 14). We propose that the majority of the polarized cells within the ghost preparation suffer from restrictions of cellular functions other than depolarization and are therefore no longer able to form colonies on plates. The quantitative discrepancies between classical and cytometric analyses question the accuracy of classical microbiological methods in the monitoring of the ghost production.
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X174 gene E product. J. Bacteriol. 169:1750-1752.
X174-protein-E-mediated lysis of Escherichia coli. Eur. J. Biochem. 180:393-398.[Medline]
-helical domain of
X174 lysis protein E, is required for its function in Escherichia coli. Mol. Microbiol. 26:337-346.[CrossRef][Medline]
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