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Applied and Environmental Microbiology, October 2003, p. 5864-5869, Vol. 69, No. 10
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.10.5864-5869.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Virginia Commonwealth University/Medical College of Virginia Campus, Richmond, Virginia 23298-0678,1 Geomatrix Consultants, Scottsdale, Arizona 852582
Received 5 May 2003/ Accepted 14 July 2003
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Although PAM is not common, cases of the disease have been reported in almost every continent. Indoor swimming pools have been the source of PAM in Czechoslovakia (9). In Mexico, five cases of PAM were associated with swimming in shallow water in an artificial canal (23). In South Australia, cases of PAM have occurred through the domestic water supply. These cases occurred during the summer months in children submerged in bathtubs and wading pools (1-3, 16, 31). In Great Britain, PAM was acquired from mud puddles in which children played after a heavy rainstorm (4). The majority of cases of PAM have been reported in the United States, and these cases have occurred in previously healthy young adults and children associated with water sports (7, 12, 14, 15, 19, 28-30, 40, 45). The presence of N. fowleri in the environment may present a risk to human health. Indeed, there has been an increase in the number of cases of PAM reported in recent years (25).
The correct identification of N. fowleri is difficult because several genera of amoebae found in the same ecological habitat are morphologically similar (33, 39). Furthermore, pathogenic N. fowleri and nonpathogenic Naegleria lovaniensis are antigenically related (39). Therefore, a sensitive and specific nested-PCR assay was developed in our laboratory to identify N. fowleri in water and soil samples (35; R. MacLean, D. J. Richardson, R. LePardo, and F. Marciano-Cabral, submitted for publication). The nested-PCR assay has been used previously to document the occurrence of N. fowleri in environmental samples collected in Connecticut and Virginia (MacLean et al., submitted).
In the present study, 19 samples were collected from sources in homes associated with the deaths of two children from PAM in Arizona. Samples were cultured on nonnutrient agar containing Escherichia coli or in liquid medium and tested for N. fowleri by nested PCR. Thermotolerant amoeboflagellates were observed by light microscopy in liquid cultures. N. fowleri was detected by nested PCR in swipe samples from sink traps, in residual pipe water, and from a Micro-Wynd filter which was used to filter bathtub water in the homes of victims of PAM.
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150 to 350 ml) was collected into one or two sterile 250-ml containers. The cotton gauze was placed in one of the containers, and both were topped off with Page's amoeba saline (29, 33). A soil sample from outside one home with water leakage was collected and placed in amoeba saline. Also, a sample from a Micro-Wynd II filter (Cuno, Incorporated, Meriden, Conn.) was obtained by collecting approximately 60.8 liters (16 gallons) of water into the bathtubs of each individual's home. Using a positive-pressure displacement pump, the collected water was passed through a 1-µm-pore-size polypropylene Micro-Wynd II filter (grade Y) and recycled back into the tub. All of the household pump fittings and hoses used were standard. The pump flow rate was approximately 16 gal per min at a pressure of 2.2 lb/in2 and was operated for approximately 3 min so that the water was cycled at least three times. The Micro-Wynd II filter was then placed in a container in sterile Page's amoeba saline.
Processing of samples.
Nineteen samples were collected, transported to the laboratory, and processed within 1 week of collection. All 19 samples were dispensed into individual 75-cm2 tissue culture flasks in 10-ml volumes in duplicate and placed either at 44 or 37°C. The samples in tissue culture flasks were observed daily for the presence of amoebae by light microscopy and were kept for PCR. A third set of samples was prepared by dispensing 10 ml of fluid into centrifuge tubes and subjecting the samples to centrifugation for 10 min at 5,000 x g. The supernatant was discarded, and the pellet was suspended in 1 ml of Page's amoeba saline and placed onto a plate of nonnutrient agar spread with heat-killed E. coli. The plates were incubated at 44°C for 48 h to isolate thermotolerant amoebae. The plates were observed for the presence of plaques produced by amoebae clearing the bacteria. Amoebae were subcultured to new plates by cutting a small portion of the agar from each plaque and placing the agar square onto new plates containing nonnutrient agar with heat-killed E. coli to avoid overgrowth of fungi. After 48 h of incubation, the plates were sealed with Parafilm and stored at room temperature for later use. The original 19 samples containing swipes or water were stored at 37°C for 3 months to promote growth of the amoebae, and portions were prepared for PCR as needed.
Preparation of samples for nested-PCR analysis.
Samples maintained in tissue culture flasks in which cysts or trophozoites were observed were kept in continuous culture in liquid medium by alternating American Type Culture Collection (ATCC) medium 802 with Page's amoeba saline to hinder growth of bacteria and fungi present in the samples. Samples were assayed by PCR beginning 10 days after collection and at intervals for 3 months. Tissue culture flasks maintained at 37°C containing amoebae were prepared by scraping the flask with a sterile cell scraper and centrifuging the contents at 5,000 x g for 5 min. The supernatant was removed, and the pellet was suspended in 100 µl of PCR-grade water and tested for N. fowleri by nested PCR. Repeat PCR assays were performed at various intervals during a 3-month period following continuous culture of the amoebae in liquid medium kept at 37°C. Cultures were observed by light microscopy for the presence of trophozoites, cysts, and flagellates. Cultures were photographed with an Olympus Ck2 microscope with a computer attachment.
Test for flagellates.
A test for flagellates was performed on three select samples that had sufficient numbers of amoebae present in the culture. Samples placed in ATCC medium 802 for 24 h were transferred to sterile distilled water and placed in a shaker incubator. Samples were examined at 15-min intervals by light microscopy for transformation of amoebae to flagellates (29).
PCR analysis.
PCR was performed by the method of Reveiller et al. (35) by amplifying a portion of a gene unique to N. fowleri. Samples were subjected to PCR amplification without prior genomic DNA extraction. Cell suspensions were used as the source of genomic DNA rather than purified genomic DNA. The forward primer, Mp2Cl5.for (5'-TCTAGAGATCCAACCAATGG-3') and the reverse primer, Mp2Cl5.rev (5'-ATTCTATTCACTCCACAATCC-3'), were used to amplify a 166-bp fragment of the Mp2Cl5 gene. PCR was performed in a 50-µl volume consisting of 1x Taq DNA polymerase buffer (10 mM Tris-HCl [pH 8.3], 50 mM KCl, 2.5 mM MgCl2), a 0.2 mM concentration of each deoxynucleoside triphosphate, 0.6 µM primer, and 2.5 U of AmpliTaq DNA polymerase (Perkin-Elmer, Branchburg, N.J.). The positive control consisted of 10 ng of plasmid DNA purified from E. coli clone Mp2Cl5. The negative control consisted of PCR-grade water lacking the DNA template. Thirty-three microliters of the samples was used in the first round of PCR amplification. The standard temperature program was 5 min at 95°C for one cycle and 1 min at 95°C, 1 min at 65°C, and 2 min at 72°C for 35 cycles. To increase the sensitivity of the assay, nested primers, Mp2Cl5.for-in (5'-GTACATTGTTTTTATTAATTTCC-3') and Mp2Cl5.rev-in (5-GTCTTTGTGAAAACATCACC-3'), which amplified a 110-bp fragment of Mp2Cl5, were used in a second round of PCR. PCR was also performed with a 50-µl volume consisting of 1x Taq DNA polymerase buffer (10 mM Tris-HCl [pH 8.3], 50 mM KCl, 2.5 mM MgCl2), a 0.2 mM concentration of each deoxynucleoside triphosphate, 0.5 µM primer, and 2.5 U of AmpliTaq DNA polymerase (Perkin-Elmer). Two microliters of the PCR product from the first round of PCR was used in the second PCR. The positive control consisted of 1 µl of the first PCR product of the positive control diluted 50 times in PCR-grade water as the DNA template. The negative control consisted of PCR-grade water lacking the DNA template. The standard temperature program was 1 min at 95°C, 1 min at 55°C, and 1 min at 72°C for 35 cycles. Amplified PCR products from the samples were demonstrated either on a 1.5% GenePure agarose gel (ISC BioExpress, Kaysville, Utah) stained with ethidium bromide or on a 4% NuSieve 3:1 agarose gel (BioWhittaker Molecular Applications, Rockland, Maine) stained with ethidium bromide.
Western immunoblot analysis.
Select domestic samples from Arizona cultured in liquid medium were harvested by centrifugation and placed in lysis buffer consisting of 50 mM Tris-HCl (pH 7.4), 1 mM phenylmethylsulfonyl fluoride, 2.1 mM pepstatin A, and 1.5 mM leupeptin. Samples were subjected to polyacrylamide gel electrophoresis (4% stacking gel and 12% separating gel) using a Protean Slab II unit (Bio-Rad, Richmond, Calif.). Samples were transferred to a nitrocellulose membrane overnight using a Trans-Blot cell unit. The nitrocellulose membranes were blocked in Tris-buffered saline containing 0.1% Tween 20 and 5% nonfat milk for 1 h. Membranes containing the samples were incubated with rabbit polyclonal antiserum to whole-cell lysates of N. fowleri or Acanthamoeba castellanii or with monoclonal antibody 5D12 (Indicia, Oullins, France) to N. fowleri (34, 38). The primary antibodies were preabsorbed three times with heat-killed E. coli for 2 h at 37°C. Membranes were incubated in secondary antibody, which consisted of peroxidase-conjugated goat anti-rabbit immunoglobulin G or rabbit anti-mouse immunoglobulin G (Sigma Co., St. Louis, Mo.) for 1 h. Blots were washed with Tris-buffered saline Tween and then developed by enhanced chemiluminescence (Western blotting detection kit; Amersham Co., Piscataway, N.J.).
Cloning and sequencing of a PCR-positive sample.
Cloning of the PCR product from sample 4 (swipe sample from a bathroom sink trap) was performed with a TOPO TA cloning kit (Invitrogen, San Diego, Calif.) according to the manufacturer's instructions. Briefly, fresh PCR product was ligated into a pCR 2.1 TOPO vector, heat shocked into a competent E. coli TOP10 strain, and grown on Luria-Bertani agar plates containing 50 µg of ampicillin/ml. Distinct single colonies were picked and grown in Luria-Bertani broth containing 50 µg of ampicillin/ml. Plasmids were purified with the Wizard Plus Minipreps DNA purification system (Promega Corp., Madison, Wis.). The sample was sequenced by using M13 reverse primers at the BWH DNA Core Sequencing Facility (Boston, Mass.) and confirmed by the VCU Massey Cancer Center Nucleic Acids Research Facility (Richmond, Va.).
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TABLE 1. PCR results for water and swipe samples collected from the homes of two children who died from PAM and the home of an adjacent neighbora
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FIG. 1. Nested-PCR assay of domestic water samples after culture at 37°C for 4 days. Samples were maintained in tissue culture flasks for 4 days at 37°C. Cultures were harvested with a cell scraper and centrifuged to obtain a pellet and supernatant. The pellet was used for nested PCR, and the supernatant was discarded. The first and second PCR-positive and -negative controls were examined on the gel since this was the first PCR assay performed with domestic water samples. (A) Nested-PCR products were demonstrated on a 4% NuSieve gel. Lanes: a and j, 100-bp ladder; b, positive control for first PCR; c, negative control for first PCR; d, positive control for second PCR; e, negative control for second PCR; f, sample 2; g, sample 3; h, sample 4; and i, sample 5. (B) Nested PCR products were demonstrated on a 1.5% agarose gel. Lanes: a and m, 100-bp ladder; b, positive control for first PCR; c, negative control for first PCR; d, positive control for second PCR; e, negative control for second PCR; f, sample 11; g, sample 12; h, sample 13; i, sample 14; j, sample 15; k, sample 16; l, sample 17. Asterisks indicate samples that were positive for N. fowleri by PCR.
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FIG. 2. Samples cultured for 1 week (A) and 1 month (B) at 37°C were analyzed by PCR. The samples in tissue culture flasks were harvested with a sterile cell scraper and centrifuged to obtain a supernatant and pellet. The pellet was used for nested PCR. PCR products were demonstrated on a 4% NuSieve gel. (A) Lanes: a and o, 100-bp ladder; b, positive control; c, negative control; d, sample 11; e, sample 12; f, sample 13; g, sample 14; h, sample 15; i, sample 16; j, sample 17; k, sample 18; l, sample 19; m, sample 20; n, sample 23. (B) Samples for PCR were prepared after 1 month in continuous culture. Lanes: a, 20-bp ladder; b, positive control; c, negative control; d, sample 2; e, sample 3; f, sample 4; g, sample 6; h, sample 11; i, sample 12; j, sample 14; k, sample 15; l, sample 16; m, sample 17; n sample 20; o, sample Wynd II filter. All domestic samples tested after 1 month were positive, with the exception of sample 20. Asterisks indicate samples that were positive by PCR analysis.
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FIG. 3. Western immunoblot analysis of domestic water samples by using polyclonal anti-N. fowleri and anti-Acanthamoeba antibodies and monoclonal antibody 5D12 for N. fowleri. Samples harvested at 1 month of culture at 37°C were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and separated proteins were transferred to nitrocellulose membranes. The membranes were incubated in the primary antibodies rabbit polyclonal anti-N. fowleri (A), monoclonal 5D12 anti-N. fowleri (B), and rabbit polyclonal anti-Acanthamoeba (C). Secondary antibodies were goat anti-rabbit or rabbit anti-mouse antibodies. The blots were developed by using enhanced chemiluminescence. Lane Nf, a whole-cell lysate of N. fowleri (ATCC 30894) used as a control. Other lanes are labeled with the sample numbers identified in Table 1.
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FIG. 4. Cultures of domestic samples were observed daily for the presence of trophozoites, cysts, or flagellates. (A) Limax-type amoebae were observed in sample 16, which was positive for N. fowleri by PCR. (B) Acanthamoeba cysts were observed in sample 7, which was negative for N. fowleri by PCR. Magnification, x400.
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Nineteen sites in the households associated with PAM victims and a neighboring home were sampled. Seventeen of these sites were shown to be positive for N. fowleri by PCR. Of particular interest is that N. fowleri was detected in residual water from the sink pipes in both homes as well as from the Micro-Wynd filter, which was used to filter bathtub water from the homes. These results are consistent with the source of infection for these two children being the domestic water source, because neither child had a history of swimming in a natural freshwater lake or pond prior to the onset of symptoms of PAM. However, both victims routinely played in the bathtub.
Infection with N. fowleri has been acquired through modes other than conventional swimming or diving in ponds and lakes. Sniffing water into the nasal passages as a religious ritual prior to prayer (24), total immersion in bathwater (1-3, 31), playing in a warm muddy puddle after rain (4), and immersion of the head in a trough of water on a school playground (16) have been described as sources of infection with these amoebae. An 8-month-old infant was thought to have acquired an infection with N. fowleri during a full-submersion baptism ceremony in a natural body of water (5).
The occurrence of N. fowleri in the domestic water supply has been reported previously (1-3). In South Australia, household water delivered via overland pipelines during a prolonged period of hot weather was attributed as the source of PAM in children in backyard wading pools or in bathtubs. N. fowleri was recovered from a sample of tap water taken from a home where a fatal case of PAM occurred. In two Australian cases, houses had remained unoccupied for considerable periods of time during warm weather (3, 8, 31). It has been suggested that under such climatic conditions, N. fowleri can multiply to significant numbers in warm stagnant sections of domestic water supplies (3, 8, 31). In this context, a number of studies have shown that, out of several physical and chemical characteristics of water, elevated temperature has been one of the most important factors accounting for the increased incidence and higher levels of N. fowleri (16-18). The cases studied in the present report emphasize that PAM should be considered in the differential diagnosis of unexplained meningoencephalitis since not all cases of this disease are associated with freshwater sports. The nested-PCR assay provides a rapid, sensitive, and specific method to determine the presence of N. fowleri in environmental and recreational sources.
The monoclonal antibody was provided by Electricite de France, Paris.
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