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Applied and Environmental Microbiology, October 2003, p. 6250-6256, Vol. 69, No. 10
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.10.6250-6256.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Microbiology, School of Biomedical and Chemical Sciences, The University of Western Australia, Queen Elizabeth II Medical Centre,1 Soil Science and Plant Nutrition, Faculty of Natural and Agricultural Sciences,2 Centre for Microscopy and Microanalysis, The University of Western Australia,3 Division of Microbiology and Infectious Diseases, The Western Australian Centre for Pathology and Medical Research, Queen Elizabeth II Medical Centre, Nedlands, Australia4
Received 26 February 2003/ Accepted 15 July 2003
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Burkholderia species constitute a diverse group of bacteria which are generally found in the rhizosphere, as are AM fungi. Initially, members included saprophytic plant-associated pathogens (2, 11, 31), although recently several species which are beneficial to plants have been recognized (3, 15, 34). In addition to causing disease in plants, several Burkholderia species pose serious threats to human and animal health. For example, B. cepacia and B. pseudomallei can cause fatal human disease. B. cepacia is a pathogen of compromised individuals, especially those with cystic fibrosis, in whom the species can cause a rapid and fatal necrotizing pneumonia known as cepacia syndrome. B. pseudomallei infection causes melioidosis, an infection that is endemic throughout the tropics, particularly in southeast Asia and northern Australia (24). For antibiotic-treated acute infections, these diseases are associated with mortality rates of 20 and 34% for B. cepacia (21) and B. pseudomallei (36), respectively. Persistence of these pathogens in humans is aided by their ability to survive within eukaryotic cells. The capacity to invade eukaryotic cells, as seen in Mycobacterium and Legionella spp., for example, can be regarded as a virulence determinant, allowing evasion of host defenses, tissue destruction, and systemic spread of the pathogen. B. cepacia, B. pseudomallei, and others within the genus (including nonpathogens) have been shown to survive within free-living amoebae (18, 23, 26). Organisms assigned to the B. cepacia complex can invade and survive within macrophages (27, 32), epithelial cells (12, 27), and human pneumocytes (22) in vitro.
Due to the ability of Burkholderia cells to interact with eukaryotic cells, it follows that these bacteria may serve as tools with which to decipher general mechanisms involved in prokaryote-eukaryote associations. This study investigated invasion of an AM fungus as a cellular model of Burkholderia infection.
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AM fungi.
Spores of Gigaspora decipiens Hall and Abbott were recovered from pot cultures of Trifolium subterraneum by wet sieving and gradient centrifugation (10). Spores were washed five times in sterile distilled water, surface disinfected with 4% (wt/vol) chloramine-T and 300 ppm of streptomycin (7) for 1 h, and then rinsed a further five times in sterile distilled water. Surface sterility was ascertained by plating out spores on 5% horse blood agar and by inoculation into brain heart infusion broth (Excel Laboratory Products) for a minimum of 48 h at 30°C. If any growth in the enrichment medium was recorded, the disinfection procedure was repeated. All washes of spores were carried out by very brief low-speed centrifugation (3 s, 800 x g) to collect spores, followed by aspiration of the supernatant.
Qualitative spore invasion assay.
Invasion of G. decipiens spores by Burkholderia spp. was determined by using a variation of the gentamicin protection assay (20) modification of Burns et al. (12). Surface-disinfected spores were placed with flame-sterilized forceps on sterilized 0.8-µm-pore-size Millipore filter papers over 1.5% water agar. A 3-µl aliquot of bacterial suspension was added to each spore. Negative control spores were inoculated with 3 µl of sterile distilled water. Each treatment was set up in triplicate on separate petri dishes, which were then left at room temperature (24°C) for 21 days.
Following this coculture of the bacteria and fungal spores, the germination frequency of spores was recorded. Germinated spores were defined as those with a germ tube extended from the spore for a distance greater than the diameter of the spore (9). Statistical significance of germination outcomes was calculated by using Fisher's exact test (Prism GraphPad 2.01). G. decipiens spores were transferred with flame-sterilized forceps into sterile 1.5-ml microcentrifuge tubes. Spores were washed by centrifuging a minimum of three times in sterile distilled water and treated with 200 µl of antibiotic solution for 2 h at room temperature to clear bacteria present on the exterior of the spores. The most effective antibiotic solution was found to be 1 mg of ceftazidime per ml-500 µg of kanamycin per ml-0.5% Tween 20 in sterile distilled water. When green fluorescent protein (GFP)-marked B. vietnamiensis was used, this antibiotic mixture was modified to 5 mg of ceftazidime per ml-500 µg of gentamicin per ml-0.5% Tween 20 in sterile distilled water. Following antibiotic treatment, the spores were washed a further five times in sterile distilled water to remove residual antibiotics, spiral plated in 50-µl aliquots onto plate count agar (Excel Laboratory Products), and incubated at 37°C overnight. The antibiotic treatment and washes were repeated, often several times, until no bacteria were detected in the spore washes. Spores were then treated with the antibiotic solution and washed in water. The washes were plated out as described above immediately prior to lysis, since the time lapse necessary for incubating viable counts may have allowed residual bacteria to multiply. These final washes did not yield any viable organisms. Spores were bulked, and batches of five spores were lysed mechanically by being crushed beneath the tip of a flame-sterilized steel rod while immersed in the remaining final wash solution. Crushing of spores was audible and was accompanied by the extrusion of spore cytoplasmic contents from within the spore wall. This was confirmed by direct visual or microscopic examination. Bulked spore lysates were spiral plated in duplicate on plate count agar. A positive result for invasion of spores was recorded when bacterial colonies appeared on these spiral plates. This bacterial growth was always extensive, in excess of 105 CFU/ml.
Quantitative spore invasion assay.
Invasion of G. decipiens by B. pseudomallei 1026b or by B. vietnamiensis WACC116 was determined quantitatively by use of the procedure for the qualitative spore invasion assay. After washing of spores with antibiotics, individual spores were placed in sterile, 16-well microtiter trays with flame-sterilized forceps. Each spore was crushed individually as described above, and spore lysates were serially diluted and spiral plated onto plate count agar in duplicate while remaining separate. The numbers of intracellular bacteria calculated from the averages of the viable counts were expressed as CFU per spore. The identity of bacteria recovered from spore lysates was confirmed by carbohydrate utilization characteristics (API 50 CH microtube system) and by nucleic acid amplification with PCR and species-specific primers (4, 5).
DNA extraction and PCR.
To identify the presence of B. vietnamiensis within inoculated G. decipiens, spores were prepared and washed with antibiotics until culturable bacteria were no longer be detected, as described above. Final washes and lysates were collected from three batches of 20 spores and extracted for PCR with the Qiagen QIAamp viral RNA minikit according to the manufacturer's instructions. DNA preparations were diluted 20-fold to remove PCR inhibitors. PCRs were carried out in a final volume of 20 µl containing 8 µl of diluted DNA extract, a 0.2 mM concentration of each deoxynucleoside triphosphate, 1x PE buffer II (10 mM Tris-HCl [pH 8.3], 50 mM KCl), a 0.2 µM concentration of each primer, 2.5 mM MgCl2, and 0.5 U of PE TaqGold (Applied Biosystems). The primers used for B. vietnamiensis were ViMaPS23-1 (forward) and CeVi-23-2 (reverse) (4, 5). Amplification was carried out with an Applied Biosystems GeneAmp PCR system 2700, with conditions as follows: hot start of 1 cycle of 94°C for 10 min, followed by 45 cycles at an annealing temperature of 50°C (94°C for 30 s, 50°C for 30 s, and 72°C for 45 s), and finally 72°C for 7 min and then holding at 4°C.
Unknown cultures obtained from uninoculated G. decipiens lysates were subjected to 16S rRNA amplification and dideoxy sequencing with an Applied Biosystems Prism 310 genetic analyzer.
To determine whether G. decipiens spores contained endobacteria related to Pandorea or Ralstonia, DNA extraction and PCR were performed as described by Bianciotto et al. (7). A Ralstonia paucula extract was used as a positive control.
Scanning electron microscopy.
Spores of G. decipiens were surface disinfected and then inoculated with either B. vietnamiensis, B. pseudomallei, or sterile distilled water as described above. Specimens were then fixed in 2.5% (vol/vol) glutaraldehyde in 0.05 M phosphate buffer (pH 7.0) for 24 h. Samples were washed twice in phosphate buffer (1 h total), dehydrated through a graded ethanol series over 7 days, transferred to 100% acetone, and then dried in a critical-point drying apparatus with liquid carbon dioxide. Spores were then sputter coated with carbon and gold and viewed with a scanning electron microscope (Philips XL30) at 20 to 25 kV. Regions of interest were further studied by using a field emission scanning electron microscope (JEOL JSM-6300F) at 3 kV. Control and inoculated spores were frozen in liquid nitrogen and observed with a Philips 505 scanning electron microscope fitted with a cryostage (Hexland) (-150°C, 6 kV) in order to reduce artifacts arising from sample fixation and dehydration.
Optical microscopy and transmission electron microscopy (TEM).
Negative control G. decipiens spores and spores cocultured with bacteria, as described above, were fixed and vacuum infiltrated (8 kPa for 5 min at room temperature) with a 2.5% (vol/vol) glutaraldehyde solution. While still in the glutaraldehyde solution, spore walls were punctured by using a laser microdissector (PALM Robot-Combisystem coupled to a Zeiss Axiovert 135) set at a cut focus of 67.49, a cut energy of 100.5%, and a pulse of 30/s to allow adequate resin infiltration. After 24 h in the glutaraldehyde solution, samples were rinsed twice in phosphate buffer (1 h total), postfixed in 2% osmium tetroxide in phosphate buffer (2 h), and rinsed a further two times in buffer prior to dehydration through graded ethanol and propylene oxide series. Specimens were then infiltrated with a Spurr's resin-propylene oxide mixture from 0 to 100% Spurr's resin over 5 days. Samples were then polymerized at 70°C for 18 h.
Semithin (0.5- to 1-µm-thick) and ultrathin (0.1-µm-thick) sections were cut on a Reichert Ultracut microtome with glass knives. Semithin sections were stained with 1% toluidine blue (pH 9) and examined with an optical microscope (Zeiss Axioskop 2). Ultrathin sections were placed onto copper grids, stained with 1% aqueous uranyl acetate and lead citrate, and inspected with a JEOL JEM-2000FX II electron microscope operating at 80 kV.
Construction of GFP-tagged Burkholderia strains.
B. vietnamiensis WACC116 and B. pseudomallei 1026b were used for all electroporation experiments. Plasmid PSMC21, constructed by Bloemberg and colleagues (8), was supplied by N. Banning, The University of Western Australia. Bacterial strains were grown to an optical density (640 nm) of between 0.9 and 1.1 in Luria broth at 37°C. These suspensions were washed twice in ice-cold sterile distilled water and twice in ice-cold sterile 10% glycerol solution and resuspended in a small volume (100 µl) of glycerol solution. Forty microliters of these cells was electroporated at 1.25 kV with approximately 85 µg of a PSMC21 plasmid preparation by using a Bio-Rad Gene Pulser II and 0.1- or 0.2-cm cuvettes. Electroporated cells were diluted in 1 ml of Luria broth, grown for 2 h at 37°C, and then spread onto Luria agar plates supplemented with 300 µg of kanamycin per ml. After 96 h at 37°C, an average of 11.2 recombinant colonies per 100 µl were recovered for B. vietnamiensis, i.e., 1.4 recombinants per ng of plasmid DNA.
Optical and confocal microscopy.
Hyphae of G. decipiens attached to germinating spores were inoculated with 10 µl of GFP-tagged B. vietnamiensis or B. pseudomallei suspension. Samples were examined immediately and after 7 days of coculture by using a differential interference contrast and fluorescence microscope (Olympus BX60F5) or a UV laser scanning confocal microscope (Bio-Rad MRC 1000/1024). All preparations were made up in sterile 0.85% saline in welled slides with coverslips of known thickness. Fluorescent samples were viewed by using the 488-nm blue line from the argon ion laser, a 522/35-nm band pass emission filter, and a Plan Apo 60x, NA1.2 water immersion objective lens (Nikon). Individual images in a stack were taken at 1.3-µm intervals.
To determine whether unculturable endobacteria were present within uninoculated G. decipiens spores, batches of five surface-disinfected spores were crushed in 200-µl volumes of sterile distilled water and stained by using a Live/Dead BacLight bacterial viability kit (Molecular Probes, Eugene, Oreg.) according to the manufacturer's instructions. Preparations were examined under blue and green light with a fluorescence microscope (Olympus BX60F5).
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TABLE 1. Recovery of Burkholderia spp. following repeated antibiotic washes and lysis of G. decipiens spores
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FIG. 1. Antibiotic clearance of B. vietnamiensis from G. decipiens spores. No bacteria were recovered following antibiotic treatments 5 and 6 for samples 1 and 2, respectively. Each treatment consisted of incubation with antibiotics followed by five washes in sterile distilled water.
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Germination of G. decipiens spores over water agar was poor (34%). An attempt was made to increase germination frequencies by altering exposure to light, culture conditions of bacterial inocula, depth in pot culture of isolated spores, and age of pot cultures and by treating spores with mild hypochlorite solution or by refrigeration of spores prior to use. No significant increase in spore germination frequencies was observed following variation of any of these factors, either in inoculated or in control spores. Overall, inoculation with B. vietnamiensis resulted in significant increases in spore germination (P = 0.0185), elevating the germination frequency to 41%. Inoculation with B. pseudomallei had little effect on spore germination, with an average of 31% of spores germinating.
Quantitative spore invasion assay.
Bacterial invasion of spores of G. decipiens was recorded in 12% of spores inoculated with B. vietnamiensis WACC116 and in 7% of spores inoculated with B. pseudomallei 1026b. Large numbers of bacteria were recovered from individual infected spores (Table 2). When B. vietnamiensis WACC116 or B. pseudomallei 1026b was inoculated onto spores, only the species inoculated could be recovered. Recovered bacteria were evaluated for carbohydrate utilization characteristics (API 50 CH microtube system) and subjected to nucleic acid amplification with PCR and species-specific primers (4, 5). Both of these tests indicated that only those species inoculated were recovered.
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TABLE 2. Invasion of G. decipiens spores by B. vietnamiensis WACC116 and B. pseudomallei 1026b
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No Pandorea or Ralstonia DNA was detected in extracts of 50 surface-disinfected G. decipiens spores. R. paucula controls yielded strong bands even when diluted 100-fold, while similar dilutions of spore extracts did not yield any amplification products.
SEM.
Scanning electron microscopy (SEM) was used to show colonization patterns of bacteria on spore surfaces and to provide insights into the means of bacterial entry into spores. Following 21 days of coculture with B. vietnamiensis (WACC116) or B. pseudomallei, G. decipiens had few bacteria present on external spore surfaces but many bacteria colonizing the hyphae. Spores were generally smooth, with little debris present (Fig. 2A). Surface morphology observations were not attributed to specimen preparation, as spores examined by SEM with a cryostage for sample preparation appeared similar to those analyzed by conventional SEM. In one case, B. pseudomallei was found to preferentially colonize the junction between the spore itself and the sporogenous cell (Fig. 2A and B). Field emission SEM analysis of this region revealed the presence of fibrillar structures often linking the prokaryotic and eukaryotic cells (Fig. 2B). Similar structures were consistently observed on G. decipiens hyphae following inoculation with Burkholderia spp. Figure 2C depicts G. decipiens hyphae, adherent B. pseudomallei, and associated fibrillar material. This image also illustrates the presence of both end-on and side-on attachment of B. pseudomallei to G. decipiens. No bacteria were seen on uninoculated spore controls.
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FIG. 2. (A) SEM of a G. decipiens spore (S) with attached sporogenous cell (SC) inoculated with B. pseudomallei. (B) Field emission SEM of the junction between the spore and sporogenous cell shown in panel A. B, bacterium. (C) Field emission SEM of G. decipiens hyphae, adherent B. pseudomallei (arrows), and associated fibrillar material. H, hypha. (D) Optical semithin section of B. vietnamiensis-inoculated G. decipiens stained with toluidine blue. Bacteria (arrows) are present throughout the cytoplasm. CW, cell wall. (E) TEM of G. decipiens cytoplasm containing bacteria (arrowheads).
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Optical and confocal microscopy.
In contrast to the spores themselves, hyphal surfaces of G. decipiens were readily colonized by B. pseudomallei and B. vietnamiensis. Differential interference contrast microscopy of hyphae exposed to B. pseudomallei and B. vietnamiensis revealed attachment of live bacteria to hyphae. Confocal laser microscopy allowed discrimination between fluorescent bacilli attached to external surfaces of G. decipiens hyphae and those located within the hyphae, as hyphal walls autofluoresce. An example of GFP-expressing B. pseudomallei internalized within a hypha is shown in Fig. 3. The confocal images are representatives taken from a stack of 13 slices through a G. decipiens hypha.
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FIG. 3. (A to F) Series of confocal laser scanning micrographs of GFP-labeled B. pseudomallei and a G. decipiens hypha. Motile, fluorescent bacteria are apparent in the aqueous medium, attached to the external surfaces of the hypha, and internalized within the hypha (C and D). (G) Nonconfocal transmission image. (H) Diagrammatic representation of the optical sectioning of the hypha. Bar, 30 µm. Images were falsely colored green using Adobe Photoshop 7.0.
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Lysis assays of G. decipiens spores indicate that variable and often large numbers of bacteria can be recovered from a proportion (7 to 12%) of spores. The variable nature of this observation may simply reflect variation in spore size. Carbohydrate utilization characteristics, nucleic acid amplification, and use of a GFP-marked strain revealed that the bacteria released from spores upon lysis were the same as those previously introduced by deliberate inoculation in vitro. Microscopic observations and amplification of PCR products from whole spore extracts confirmed the presence of intracellular bacteria. In the case of TEM, spores that contained bacteria displayed amorphous cytoplasm that lacked defined organelles. This appearance is consistent with cell death but does not resolve whether spore death occurred before or after bacterial invasion. No actively dividing bacteria have been observed within spores, consistent with other studies of eukaryotic Burkholderia associations (12, 32), which report an absence of significant intracellular bacterial replication.
The bacteria observed within G. decipiens spores with TEM were not antibody labeled and therefore could not be conclusively identified as those previously inoculated. Furthermore, G. decipiens spores may contain resident populations of coccoid endobacteria. The granular bodies within the intracellular bacteria are likely to be cytoplasmic accumulations of polyhydroxyalkanoates which are known to occur in Burkholderia spp. (17, 29). Lysates of inoculated spores consistently yielded PCR products identical to those of the inoculated bacteria. No bacterial DNA product was ever amplified from either the interior or the exterior of surface-disinfected, uninoculated spores.
The frequency with which bacterial invasion occurred was more constant than the number of bacteria observed per spore. This may have reflected the characteristics of the spore population, such as age, dormancy, or viability. It is interesting that the increase in germination frequencies attributed to inoculation with B. vietnamiensis (14%) matched the proportion of spores invaded (12%). Bianciotto et al. (7) proposed that Burkholderia spp. within G. margarita migrated from spores to hyphae to allow for vertical transmission of the symbiotic prokaryotes. In the case of G. decipiens and Burkholderia spp., although there is no evidence of any symbiotic relationship, bacterial access to fungal hyphae may allow for movement into the spores and subsequent colonization of this intracellular habitat. Individual spores of G. decipiens are able to germinate on more than one occasion, resulting in old germ tubes and associated damaged or open-ended hyphae, which may act as entry points for bacterial access to spores. As Burkholderia spp. are generally free-living, this may facilitate continuous but low-level bacterial uptake from the environment by mycorrhizal fungi.
The germination frequency of spores (G. decipiens) was significantly enhanced by incubation with B. vietnamiensis but not by incubation with B. pseudomallei. It has been shown that bacteria can have either positive or negative effects on germination of spores of AM fungi (1, 35, 37). In several cases positive effects on spore germination and mycorrhiza formation in plants have been attributed to volatile compounds produced by bacteria (30, 35). Bacteria are also thought to play a more indirect role by detoxifying the fungal culture medium (14). This is believed to reduce the inhibition of hyphal growth that results from an accumulation of fungal biosynthetic metabolites in the medium.
We have conclusively demonstrated, using a variety of techniques, that exogenous bacteria can be recovered from within spores of an AM fungus following a period of coculture in vitro. This observation has possible implications for the dissemination of disease-causing bacteria. In the case of Legionella spp., intra-amoebic survival and escape are regarded as a potential route of infection (6). In a similar fashion, inhalation of soilborne particles containing spores of AM fungi could theoretically result in disease, if harmful bacteria occupy those spores. Implications regarding the role of AM fungi in agriculture also arise. In the symbiosis described between G. margarita and a Burkholderia endosymbiont, nitrogen fixation (nif) genes possessed by the bacterial partner were proposed to play a role in nitrogen acquisition by the fungus (28). As bacterial uptake by at least one species of AM fungal spores (G. decipiens) occurs, possible beneficial effects on fungal growth and mycorrhiza formation should be further investigated.
This study highlights the wide range of potential cellular hosts for Burkholderia spp. in the natural environment. Our observations emphasize the need for a more comprehensive ecological appraisal of Burkholderia spp. and their interactions with eukaryotes in the rhizosphere.
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