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Applied and Environmental Microbiology, November 2003, p. 6569-6576, Vol. 69, No. 11
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.11.6569-6576.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Institut für Molekulare Mikrobiologie und Biotechnologie der Westfälischen Wilhelms-Universität Münster, D-48149 Münster, Germany
Received 27 May 2003/ Accepted 7 August 2003
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natural,
is based on the substrate ferulic acid (22, 24). Previously, the gram-positive microorganisms Amycolatopsis sp. strain HR167 and Streptomyces setonii were identified as being able to convert ferulic acid to vanillin and which exhibited a very high tolerance towards this highly reactive aromatic aldehyde (2, 14; B. Müller, T. Münch, A. Muheim, and M. Wetli, European Patent Office patent application EP0885968, 1998; J. Rabenhorst and R. Hopp, European Patent Office patent application EP0761817, 1997). When these bacteria were used in ferulic acid bioconversions, vanillin concentrations of more than 10 g liter-1 were obtained (Müller et al., patent application; Rabenhorst and Hopp, patent application). The major drawback of the Amycolatopsis- and S. setonii-based microbial production of vanillin is the relatively high price of the substrate ferulic acid.
A new strategy for producing ferulic acid and vanillin is the enzymatic oxidative conversion of eugenol (Fig. 1). Eugenol is a cheap
natural
substrate that can be isolated from the essential oil of the clove tree Syzygium aromaticum on an industrial scale. The genes encoding proteins of the oxidative eugenol catabolism pathway have been investigated in detail in different Pseudomonas strains (1, 5, 13, 15, 16, 17, 18, 20, 21). The genes ech and fcs of Pseudomonas sp. strain HR199, encoding feruloyl-coenzyme A (CoA) synthetase and enoyl-CoA hydratase/aldolase, respectively, were used to engineer Escherichia coli strains able to catalyze the conversion of ferulic acid to vanillin (18). The genes ehyAB, encoding the eugenol hydroxylase of Pseudomonas sp. strain HR199 (12, 20), were expressed in Ralstonia eutropha H16 to establish the key steps of eugenol biotransformation, including the initial conversion of eugenol to coniferyl alcohol, in this recombinant strain (19).
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FIG. 1. Biotransformation of eugenol to vanillin.
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TABLE 1. Strains and plasmids used in this study
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Isolation, manipulation, analysis, and transfer of DNA.
All genetic techniques were performed as described by Sambrook et al. (25). DNA sequences of constructed hybrid plasmids were confirmed by DNA sequencing according to the chain termination method, using an automatic sequencer (Li-Cor model 4000L; MWG-Biotech, Ebersberg, Germany).
Isolation of total RNA and cloning of vanillyl alcohol oxidase gene vaoA.
Total RNA was isolated from P. simplicissimum CBS170.90 cells after 48 h of growth on minimal medium containing veratryl alcohol as inducer of vanillyl alcohol oxidase expression using a Qiagen RNeasy minikit. The vaoA comprising cDNA that encoded vanillyl alcohol oxidase was amplified in a reverse transcription-PCR using the primers vaoU (5'-AAAAGAGCTCTAAGGAGGTGACAACATGTCCAAGACACAGGAATTTAGGCC-3') and vaoD (5'-AAAAGCGGCCGCTTACAGTTTCCAAGTAACATGACTG-3'), which were designed from the published vaoA sequence (3). These primers were used together with the isolated total RNA applying a Qiagen OneStep reverse transcription-PCR kit. For an enhanced expression of the vaoA gene in E. coli, a consensus Shine-Dalgarno sequence (TAAGGAGGTGA) was introduced four nucleotides from the vaoA start codon in the upstream primer vaoU. The PCR product was digested with SacI (site underlined in the upstream primer) and NotI (site underlined in the downstream primer) and cloned in pBluescript SK(-). In the resulting hybrid plasmid pSKvao, the vaoA gene was colinear to and downstream of the lacZ promoter of the vector.
PCR-directed mutagenesis for elimination of interfering restriction sites.
The vaoA gene contained an EcoRI restriction site at position 70 (referring to the published coding region) (3) and a BamHI site at position 1608, while calA contained an EcoRI site at position 462. For further subcloning of vaoA and calA, it was necessary to eliminate these interfering restriction sites. Because of the terminal positions of the EcoRI and BamHI restriction sites in vaoA, these two sites were eliminated using the primers vaoU-m (5'-AAAAGAGCTCTAAGGAGGTGAAACATGTCCAAGACACAGGAATTTAGGCCTTTGACACTGCCACCCAAGCTGTCGTTAAGTGACTTCAATGAGTTCATC-3') and vaoD-m (5'-AAAAGCGGCCGCTTACAGTTTCCAAGTAACATGACTGTATTGACTCGGCCAAACACCAGACTTTCCCGGGGCAATGATGCCATTAGGGTCCACCG-3') in a PCR with pSKvao as the template DNA. The recognition sequences of the restriction enzymes were mutated by silent nucleotide exchanges in the primers used (underlined). The PCR product was digested with SacI and NotI and cloned in pBluescript SK(-), resulting in pSKvaom.
The EcoRI restriction site in calA was eliminated by using a unique site elimination mutagenesis kit from Amersham Pharmacia (Freiburg, Germany) with the primers calAm (5'-CCCCGAGTTCTGCTACCAGTATTT-3') and Pmut (5'-GAACTCGATATCAAGCTTATCGGTAC-3'), resulting in hybrid plasmid pSKcalAm.
Construction of hybrid plasmid pSKvaomPcalAmcalB.
The coniferyl aldehyde dehydrogenase gene calB was isolated from SpeI-BamHI-digested pSKcalB, which has been described recently (19), and was subsequently cloned in SpeI-BamHI-digested pSKcalAm, resulting in hybrid plasmid pSKcalAmcalB. In order to increase the activities of the coniferyl alcohol and coniferyl aldehyde dehydrogenases in corresponding recombinant E. coli strains, an additional promoter was integrated upstream of calAm. This was achieved by amplification of calAmcalB together with the lacZ promoter in a PCR using the primers lacZU (5'-AAAAGGATCCACCGAGCGCAGCGAGTCAGTG-3') and calBD2 (5'-AAAAAGAATTCCCACTACCAACGGTTCTAACACTCCG-3'). The PCR product was digested with BamHI (site underlined in the upstream primer) and EcoRI (site underlined in the downstream primer) and cloned in BamHI-EcoRI-digested pSKvaom, resulting in hybrid plasmid pSKvaomPcalAmcalB.
Enzyme assays.
Cells of recombinant strains of E. coli were grown for 12 h at 37°C in LB or TB in the presence of 1 mM IPTG (isopropyl-ß-D-thiogalactopyranoside). Cells were harvested by centrifugation and resuspended in a suitable buffer with respect to the subsequent enzyme assay. Disruption of the cells was performed either by a twofold French press passage at 96 MPa or by sonication (1 min/ml of cell suspension with an amplitude of 40 µm) with a Bandelin Sonopuls GM200 ultrasonic disintegrator. The soluble fractions of crude extracts were obtained by centrifugation at 100,000 x g at 4°C for 1 h. Vanillyl alcohol oxidase, coniferyl alcohol dehydrogenase, and coniferyl aldehyde dehydrogenase were measured in optical enzymatic tests as described previously (1, 3, 19). The amount of soluble protein was determined as described by Bradford (4).
Cultivation on a 30-liter scale.
A Biostat DL30 stainless steel reactor (B. Braun Biotech International, Melsungen, Germany) with a total volume of 42 liters (28-cm inner diameter and 71-cm height) and a relation of stirrer diameter to vessel diameter of 0.375 was used for cultivations on the 30-liter scale. This bioreactor was equipped with three stirrers, each containing six paddles and a Funda-Foam mechanical foam destroyer (B. Braun Biotech International). In addition, sterilizable probes were used to measure dissolved oxygen (pO2) (model 25; Mettler-Toledo GmbH, Steinbach, Switzerland), pH (model Pa/25; Mettler-Toledo GmbH), foam (model L300/Rd. 28; B. Braun Biotech International), temperature (pt 100 electrode; M. K. Juchheim GmbH, Fulda, Germany), and optical density at 850 nm (model CT6; Sentex/Monitek Technology Inc.). The fermentation process was controlled and recorded by a digital control unit in combination with the MFCS/win software package (B. Braun Biotech International).
Carbon dioxide and oxygen concentrations in the exhaust gas were measured with a URAS 10 P NDIR spectrophotometer (Mannesmann, Hartmann and Braun, Frankfurt, Germany) or a Magnos 6 G oxygen analyzer (Mannesmann, Hartmann and Braun), respectively. Cultivations were performed at 30°C and at a pO2 range of 0 to 100% air saturation of the medium, which was controlled by agitation rates between 200 and 500 rpm and aeration rates of 0.4 and 1.0 volume per volume per minute. The pH in the medium was controlled between 7.1 and 7.3 by addition of 4 N HCl or NaOH. If the mechanical foam destroyer insufficiently removed foam, the antifoam agent Silikon Antischaum Emulsion SLE (Wacker, Darwin Vertriebs GmbH, Ottobrunn, Germany) was added. Small cell-free samples of the culture fluid for analytical purposes were prepared by 10 min of centrifugation at 3,500 x g.
Materials.
Restriction endonucleases, T4 DNA ligase, lambda DNA, and substrates used in the enzyme assays were obtained either from Roche Molecular Biochemicals (Mannheim, Germany) or from Invitrogen (Karlsruhe, Germany). Agarose type NA was purchased from Amersham Pharmacia Biotech (Freiburg, Germany). Synthetic oligonucleotides were purchased from MWG-Biotech. All other chemicals were from Merck Eurolab (Darmstadt, Germany), Serva Feinbiochemica (Heidelberg, Germany), or Sigma-Aldrich Fine Chemicals (Deisenhofen, Germany).
Nucleotide sequence accession numbers.
The nucleotide sequence accession numbers of the calA (named CADH in the patent), calB, and vao genes are A92130, AJ006231, and Y15627, respectively.
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Eugenol is a highly toxic substance for most bacteria (11). To investigate the eugenol tolerance of the selected host E. coli XL1-Blue, several 50-ml cultures in 250-ml Erlenmeyer flasks without baffles containing LB medium and different concentrations of eugenol ranging from 0.01% (vol/vol) up to 0.1% (vol/vol) were inoculated with an overnight preculture. The cultures were incubated for 48 h at 37°C, and the optical densities of the cultures at 600 nm were determined daily. As shown in Table 2, growth of E. coli XL1-Blue was only slightly affected by eugenol concentrations of up to 0.025% (vol/vol). There was a notable inhibition of E. coli XL1-Blue at a eugenol concentration of 0.05% (vol/vol), and the strain was no longer able to grow at concentrations higher than 0.075% (vol/vol).
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TABLE 2. Tolerance by E. coli XL1-Blue of different eugenol concentrationsa
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Since the hydroxylation of eugenol to coniferyl alcohol is also catalyzed by vanillyl alcohol oxidase (VaoA) from P. simplicissimum CBS 170.90 (8, 10), the corresponding gene vaoA was chosen to establish the initial eugenol biotransformation step in E. coli. vaoA was amplified as cDNA and cloned in pBluescript SK(-), and site-specific silent mutations for elimination of an EcoRI and a BamHI restriction site in the gene were introduced as described in Materials and Methods. The resulting hybrid plasmid pSKvaom, harboring vaoA colinear to and downstream of the lacZ promoter, conferred vanillyl alcohol oxidase activity to recombinant strains of E. coli XL1-Blue (Table 3). Furthermore, with IPTG-induced resting cells of E. coli XL1-Blue(pSKvaom), a conversion of 3.25 mM eugenol (0.05% [vol/vol]) to coniferyl alcohol was obtained within 1 h. In addition, coniferyl aldehyde was detected in the medium, which was most probably due to an unspecific alcohol dehydrogenase activity of the host cells.
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TABLE 3. Organization of genes in hybrid plasmids and in vitro enzyme activitiesa
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Biotransformation of eugenol to ferulic acid in 50-ml cultures.
To investigate the biotransformation of eugenol to ferulic acid, cells of E. coli XL1-Blue(pSKvaomPcalAmcalB) were grown overnight at 30°C in 50 ml of TB medium containing tetracycline, ampicillin, and IPTG. When the culture entered the stationary growth phase, 25-µl portions of eugenol (final concentration, 0.05% [vol/vol]) were added hourly during a 15-h biotransformation phase, and the appearance of coniferyl alcohol, coniferyl aldehyde, and ferulic acid in the culture supernatant was analyzed by HPLC. The time course of the production of ferulic acid from eugenol is summarized in Fig. 2. Within 15 h a ferulic acid concentration of 8.6 g liter-1 was obtained, corresponding to a molar yield of 90.8% with respect to the added amount of eugenol. Cultures of E. coli XL1-Blue harboring only the vector pBluescript SK(-), which were treated in the same way as a negative control, showed no conversion of eugenol.
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FIG. 2. Production of ferulic acid from eugenol by E. coli XL1-Blue(pSKvaomPcalAmcalB). Cells were grown in 50 ml of liquid TB medium in the presence of tetracycline, ampicillin, and IPTG overnight at 30°C. Portions (25 µl) of eugenol (final concentration, 0.05% [vol/vol]) were added to the culture hourly. Samples were taken, and ferulic acid concentrations were determined by HPLC. Data are means for three independent experiments. The variance is indicated by error bars. , total amount of added eugenol; , ferulic acid concentration.
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FIG. 3. Fed-batch fermentation of E. coli XL1-Blue(pSKvaomPcalAmcalB) on the 30-liter scale in TB medium. The cultivation was done in a 42-liter stirred-tank reactor, and the cultivation parameters were pH 7.2, aeration at 0.8 to 1.0 volume per volume per minute, and agitation at 200 to 400 rpm. Aeration and agitation were adjusted according to the oxygen demand of the culture. The temperature was decreased from 30 to 28°C at the beginning of the biotransformation process. Eugenol (100 ml) was added to the culture continuously over 2 h ( ), maintaining a final concentration of approximately 0.1% (vol/vol) in the medium. Subsequently, eugenol was added in pulses of 30 ml to the medium ( ).
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Cells of E. coli XL1-Blue(pSKvaomPcalAmcalB) were incubated on the 50-ml scale as described above until a ferulic acid concentration of 5 g liter-1 was reached. Subsequently, washed cells of a 50-ml culture of E. coli XL1-Blue(pSKechE/Hfcs), which had been grown to the late exponential growth phase and induced by the addition of IPTG, were added to the culture. In order to inactivate the calB gene product, which besides coniferyl aldehyde dehydrogenase also possesses vanillin dehydrogenase activity (17), the temperature was raised to 37°C. Further incubation of this mixed culture and analysis of culture supernatants via HPLC revealed a production of 0.3 g of vanillin liter-1 after 2 h. At this time point, 4.6 g of ferulic acid liter-1 and 0.1 g of vanillyl alcohol liter-1 were detected in the culture supernatant. During further incubation, however, the vanillin produced was completely reduced to vanillyl alcohol and no more ferulic acid was converted to vanillin, indicating the loss of biotransformation capability of this mixed culture.
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natural
flavor compound. Until today, only the biotransformation of ferulic acid to vanillin had been developed to an economically feasible process. Using Amycolatopsis sp. strain HR167, 11.5 g of vanillin liter-1 was produced from 19.9 g of ferulic acid liter-1 within 32 h on a 10-liter scale, corresponding to a molar yield of 77.8% (Rabenhorst and Hopp, patent application). A biotransformation with similar efficiency based on the same substrate using S. setonii as a biocatalyst was developed (14; Müller et al., patent application). However, these biotransformations depend on the use of the expensive substrate ferulic acid. A different source for a natural ferulic acid feedstock is eugenol, which is a commercially available natural raw material extracted from clove tree leaves. The current market price is about $5 kg-1 (22). Eugenol can be enzymatically converted to ferulic acid via coniferyl alcohol and coniferyl aldehyde. The genes ehyAB, calA, and calB, which are involved in this bioconversion, were investigated in detail in Pseudomonas sp. strain HR199 and Pseudomonas sp. strain OPS1 (1, 5, 20). Pseudomonas sp. strain HR199 has been used to produce natural ferulic acid (23); however, the yield of 6.7 g of ferulic acid liter-1 from 13.9 g of eugenol liter-1 within 78 h (R. Hopp and J. Rabenhorst, European Patent Office patent application EP0583687, 1994) was too low for a commercial process. To achieve higher yields, the said genes of Pseudomonas sp. strain HR199 were expressed in R. eutropha H16, which is not able to degrade ferulic acid (19). With this recombinant strain, 3.5 g of ferulic acid liter-1 from 3.2 g liter-1 eugenol was obtained within only 20 h, which corresponded to a molar yield of 93.8% (19). The major difficulty of this biotransformation process was the sensitivity of R. eutropha H16 to eugenol, demanding a stringent eugenol addition mode to keep the final concentration of eugenol in the medium below 3.25 mM (corresponding to 0.05% [vol/vol]).
In the present study, we used E. coli XL1-Blue as an alternative host strain for gene expression, since it exhibited a significantly higher eugenol tolerance than R. eutropha H16 (Table 2) (19). However, the expression of the Pseudomonas sp. strain HR199 genes ehyAB, calA, and calB in this strain did not lead to a suitable biocatalyst, even after coexpression of azu, encoding the putative physiological electron acceptor of eugenol hydroxylase (7). A suitable alternative for ehyAB was found in the gene vaoA from P. simplicissimum CBS 170.90, encoding vanillyl alcohol oxidase (8). This well-characterized flavoprotein has a wide substrate specificity and is able to catalyze the hydroxylation of eugenol to coniferyl alcohol in addition to the oxidation of vanillyl alcohol to vanillin and other reactions (8, 10). This enzyme has even been used for the in vitro enzymatic synthesis of vanillin (26). By expressing the vaoA gene together with calA and calB in E. coli XL1-Blue, we were able to obtain 8.6 g of ferulic acid liter-1 within 15 h at a molar yield of 90.8% with respect to the substrate eugenol. This biotransformation process was successfully transferred to the 30-liter scale, where we obtained a ferulic acid concentration of 14.7 g liter-1 after a total fermentation time of 30 h. The molar yield of this biotransformation was 93.3% and even higher than at the 50-ml scale. Thus, E. coli XL1-Blue(pSKvaomPcalAmcalB) is a highly efficient biocatalyst for producing natural ferulic acid from eugenol.
Based on this successful conversion, we established a two-step biotransformation process leading from eugenol to vanillin. In a recent study it was shown that the coexpression of the fcs and ech genes of Pseudomonas sp. strain HR199, encoding feruloyl-CoA synthetase and enoyl-CoA hydratase/aldolase, respectively, enabled recombinant E. coli strains to convert ferulic acid to vanillin (18). The sequential application of the two recombinant E. coli strains harboring the hybrid plasmids pSKvaomPcalAmcalB and pSKechE/Hfcs initially led to the production of 0.3 g of vanillin liter-1. However, during further incubation vanillin was reduced to vanillyl alcohol and no more ferulic acid was converted to vanillin. The reduction of vanillin represents a detoxification mechanism, which was also observed with E. coli XL1-Blue cells during incubation with vanillin (17).
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