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Applied and Environmental Microbiology, December 2003, p. 7063-7072, Vol. 69, No. 12
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.12.7063-7072.2003
Copyright © 2003, American
Society for
Microbiology. All Rights Reserved.
Division of Environmental and Applied Biology, Biological Sciences Institute, School of Life Sciences, University of Dundee, Dundee DD1 4HN, Scotland, United Kingdom
Received 26 March 2003/ Accepted 27 August 2003
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The biological cycling of selenium is receiving increasing attention, due not only to the biological importance of selenium as an essential trace element but also to the potential for selenium pollution to cause significant ecological damage (42). Selenium is a group 16 metalloid element possessing several stable oxidation states. Under oxic conditions, selenium is present mostly as the oxyanions selenite (SeO32-, Se4+ oxidation state) and selenate (SeO42-, Se6+ oxidation state), whereas under anoxic conditions, selenide (Se2-) and elemental selenium (Se0) appear predominant (5, 6). Selenium is incorporated by organisms through selenide, is important in some enzyme systems, and may substitute for sulfur in amino acids and other organic molecules (2). The (bio)chemical similarities of selenium to sulfur have also led workers to focus on the biological cycling of selenium by organisms involved in the sulfur cycle (46). More recently, work has focused on the separate cycling of selenium and sulfur, particularly emphasizing the dissimilatory reduction of selenium by microorganisms as an important biogeochemical process in its own right (35).
SRB have the capacity to enzymatically reduce small amounts of selenium in a number of ways. Selenate may be reduced to selenide in nanomolar amounts via the dissimilatory sulfate-reducing pathway, resulting in the production of volatile hydrogen selenide (46). Assimilatory reduction of selenium by SRB is also required for the incorporation of selenide as an essential trace nutrient, and selenide may be released as the volatile alkylated species dimethyl selenide and dimethyl diselenide (24). A separate pathway by which SRB enzymatically reduce selenium oxyanions to elemental selenium has also been demonstrated (40). SRB do not appear to be able to couple this to growth, however, and the range of environmental circumstances under which this might take place is poorly understood.
Here we report on the precipitation of significant quantities of selenium and sulfur by SRB, growing as attached biofilm, under environmentally relevant conditions. This represents a further means for the removal of selenium from aqueous solution by SRB and demonstrates, for the first time, the capacity to precipitate elemental sulfur during sulfate-reducing growth. The microbially induced chemical reaction is detailed and the location and nature of the precipitate within intact biofilms is shown.
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Experimental conditions.
The experimental medium was as
described above, with the addition of 200 µM sodium selenite to
positive treatments (a concentration found to be subinhibitory to
biofilm-grown SRB in preliminary experiments). The potential for
abiotic interactions between selenium oxyanions and sulfide meant that
the addition of sodium sulfide was unsuitable for experimental
cultures. However, SRB are able to exert a degree of redox control over
their environment, enabling the initiation of active sulfate reduction
(9), and at the relatively
high inoculum densities used in these experiments, active sulfate
reduction began without any appreciable lag time.
Biofilms were pregrown on 80- by 250-mm Thermanox coupons in 25-ml borosilicate glass vials fitted with butyl rubber bungs. The headspace was filled with high-purity nitrogen under positive pressure, and samples were taken by inserting a hypodermic needle through the bung. Before aseptic transfer to selenium-containing medium, biofilms were washed overnight in anaerobic sulfate-free salt solution to remove traces of free sulfate/sulfide. Media were adjusted to pH 7.0 and were thoroughly deoxygenated by sparging with high-purity N2. Manipulations were carried out in a nitrogen stream, and incubations were carried out under a nitrogen headspace at positive pressure at 30°C in the dark.
Measurement of selenite and
sulfate.
All samples were
centrifuged (12,000 x g, 8 min) to remove suspended
and colloidal material before analysis. Supernatants were diluted with
0.1 M ZnCl2 solution as appropriate, recentrifuged to remove
resulting sulfidic precipitates, and membrane filtered (0.2-µm
pore size) directly into autosampler vials. Sulfate measurements were
determined by ion chromatography with a PRP-X100 anion-exchange column
in a Metrohm 733 unit with a 732 conductance detector linked to a 750
autosampler through Metrohm IC-Net software. The eluant was 5 mM
potassium hydrogen phthalate in 2% (vol/vol) acetonitrile,
adjusted to pH 4.6 with 1 M NaOH. The flow rate was set at 2.0 ml
min-1, the sample loop was 200 µl, and the
standard was sodium sulfate. Selenite was measured by anodic stripping
voltammetry, with a dropping mercury electrode and potassium chloride
reference electrode. The equipment comprised a Metrohm 633 VA stand
with Autolab/Eco-chemie current recorder and voltage generator and
Autolab GPES manager software. Samples were run in 16 ml of 2 M
ammonium sulfate, with the addition of 1.6 ml of 0.1 M Na2
EDTA as a chelating agent and 0.4 ml of 1.0 M CuSO4
· 5H2O. The solution was adjusted to pH 2.2 with
concentrated H2SO4. All reagents were analytical
grade. Using this method, sensitivities into the nanomolar range were
attained.
Electron microscopy.
A Philips XL30 environmental scanning
electron microscope (ESEM) with EDX facility, in dry operating mode,
was used for elemental mapping and point analysis. Unfixed biofilms
were carefully removed from culture media, equilibrated overnight in
degassed anaerobic deionized water to remove sodium and potassium salts
from the saline culture medium, and placed under an argon atmosphere to
prevent oxidation before drying under a vacuum and coating with 5 nm of
carbon. Analysis was carried out immediately after coating.
Semiquantitative EDX analysis was carried out by using several
replicate measurements standardized against powder mixtures of the
elements of concern in a range of relative molar concentrations.
Elements used as standards were at least Analar grade. Cryoelectron
microscopy was carried out with a Hitachi S-4700 high-resolution field
emission scanning electron microscope (FESEM) fitted with a
low-temperature stage and Oxford Alto 2500 cryopreparation chamber.
Biofilm samples were fixed in 2.5% (vol/vol aqueous)
glutaraldehyde to prevent dehydration during freezing, snap-frozen in
liquid nitrogen, fractured in the Oxford cryochamber, and sublimated at
-90°C to reveal internal features before coating with
15 nm of carbon. For transmission electron microscopy, biofilms were
prepared by rinsing in salt solution and fixing with 2.5%
glutaraldehyde, as described above. A hydrophilic melamine resin
(Nanoplast) was used to prepare blocks by part-curing for 2 days at
4°C under a nitrogen atmosphere, before being poured into a
butyl-rubber mold, leaving a convex meniscus. Biofilms were carefully
removed from cultures, and excess water was removed by wicking with a
small piece of filter paper. A section of biofilm was then cut,
carefully placed facedown over the mold, and allowed to settle into the
resin. This was allowed to impregnate the biofilm and cure for a
further 2 days at room temperature, under nitrogen, before raising the
temperature to 40°C for the final cure. In this way, the
hydrated structure of the biofilm was maintained. Thin sections (120
nm) were then prepared in the standard way, with a microtome fitted
with a glass knife. Sections were mounted on copper grids for viewing
and poststained with 1% lead citrate where
appropriate.
Abiotic
incubations.
Reaction tests
with spent culture medium and abiotic reaction mixtures were carried
out in sealed 100-ml Wheaton bottles with nitrogen in the headspace.
All solutions were sparged with nitrogen before use, and manipulations
were carried out anaerobically. Spent culture medium was taken from
late-stationary/decline-phase cultures of free cells. Cultures were
lactate limited, and at the end of growth, no carbon or energy source
remained available for active metabolism, except that from slow biomass
turnover. Spent cultures contained ca. 10 mM total sulfide and had a pH
of
8.5. Two hundred micromolar Na2SeO3
was added directly to the cultures. Abiotic tests were carried out in
10 mM NaCl solution adjusted to pH 7.5, and all of these incubations
were adjusted to pH 7.0 to 7.5 following the addition of reactants.
Medium was 10 mM NaCl in deionized water, kept anaerobic by bubbling
nitrogen, and adjusted to pH 7.5 before and after the addition of
further elements by using HCl or NaOH as appropriate. Additions were
5.0 mM Na2S plus 250 µM
Na2SeO3; 5.0 mM Na2S plus 250
µM Na2SeO3 plus 250 µM
FeCl2 · 7H2O; 250 µM
Na2S plus 5.0 mM Na2SeO3 plus 250
µM FeCl2 · 7H2O; 250 µM
Na2S plus 250 µM Na2SeO3 plus
5.0 mM FeCl2 · 7H2O; and 250 µM
Na2SeO3 added to extant FeS
precipitate. The precipitates that formed were collected by
shaking the bottle and drawing off the medium plus suspended
precipitate with a syringe and hypodermic needle inserted through the
seal. The suspension was passed through a 0.2-µm-pore-size
cellulose nitrate membrane filter and washed with two syringe volumes
of anaerobic sodium chloride solution. Filters were mounted directly
onto the microscope stage for analysis. These experiments were carried
out over a number of days, and pH changes and precipitates were allowed
to equilibrate
overnight.
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FIG. 1. Removal
of selenite from solution by SRB biofilms in batch culture.
Twenty-five-milliliter cultures were inoculated with pregrown biofilms
on 25- by 8-mm polystyrene coupons. , selenite concentration
(micromolar); , sulfate concentration (millimolar). Error bars
represent standard deviations (n =
4).
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FIG. 2. Raster-generated
EDX spectra for small areas of biofilm from control biofilm (a) and
selenite-containing culture (b). Typical spectra are shown from one of
many
determinations.
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FIG. 3. Shown
are (clockwise from top left-hand side) a plan view of a typical
selenite-exposed D. norvegicum biofilm generated by ESEM in
wet mode (upper left) and EDX elemental maps of the same area of the
biofilm with signal-density distributions of carbon (C), sulfur (S),
and selenium (Se). Abundant granular precipitates (light color) and
rod-shaped bacteria, partially obscured by the extracellular matrix,
are visible near the contoured surface of the hydrated biofilm.
Selenium and sulfur are clearly associated with the areas where
granules are present, whereas carbon is less abundant. Typical results
are shown from 1 of about 20 determinations from several biofilms. Bar,
1
µm.
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FIG.4. Cryosectioned
FESEM images of hydrated biofilm exposed to 200 µM Na selenite
and inoculated for 96 h at 30°C. (a) An isometric
view shows a biofilm section beneath the surface canopy of the
extracellular matrix. Individual cells of D. norvegicum (black
arrow) form colonies within the matrix. Abundant Se and S granules
(white arrow) are clearly seen precipitated beneath the biofilm canopy.
(b) An enlargement of a small area, taken from another region of the
same biofilm, shows some granules associated with the surface of an
individual bacterium (black arrow), with more abundant precipitation in
the extracellular matrix (white arrow). Polar flagella can also be
seen. The bacterium at bottom right has been sectioned during freeze
fracture. Typical examples are shown from two of many areas observed in
several biofilms. Bar, 1
µm.
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FIG. 5. Transmission
electron microscopy section of hydrated biofilm. The section is mounted
diagonally, with the substrate running from the top left to the bottom
center, and the biofilm surface, with some sloughed cells, is towards
the top right hand edge of the image. Electron-dense granules can be
seen throughout the section (arrows and inset). The section shown here
was poststained with lead citrate-uranyl acetate; unstained sections
showed similar results. Bars, 1
µm.
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FIG. 6. EDX
scans of washed precipitates from a series of abiotic reaction
mixtures. Additions to 10 mM NaCl were 5.0 mM Na2S plus 250
µM Na2SeO3 (A), 5.0 mM Na2S
plus 250 µM Na2SeO3 plus 250 µM
FeCl2 · 7H2O (B), 250 µM
Na2S plus 5.0 mM Na2SeO3 plus 250
µM FeCl2 · 7H2O (C), 250
µM Na2S plus 250 µM
Na2SeO3 plus 5.0 mM FeCl2 ·
7H2O (D), and 250 µM Na2SeO3
(E) added to extant FeS precipitate (F) as in
E following acidification of the medium and readjustment to
pH 7.5. The vertical scale is indicative only. Carbon and oxygen peaks
are from the cellulose
filters.
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Electron microscopy revealed the form and content of the deposited selenium-containing granules (Fig. 3 and 4). Although cell growth occurred during experimental incubations and free cells were released into the medium, new growth has consistently been shown to be from the surface of bacterial biofilms, with extant cells remaining irreversibly embedded within the EPS matrix (13, 21). The appearance of granules deep within the matrix therefore demonstrates that these solids form within the biofilm structure. Entrapment of granules precipitated in the bulk medium also takes place at the biofilm surface, enhancing the ability of the biofilm to accumulate these elements from the surrounding environment. These results differ from those for the deposition of copper and cadmium sulfides, which appeared to be limited to surface layers of the biofilm (43, 44). While SRB biofilm matrix components include moieties with the capacity to bind metal cations (1, 11), less is understood about the interactions of EPS components with (oxy)anions. These results show that extracellular components of the SRB biofilm do not play a fundamental role in preventing the diffusion of selenite through the biofilm, but rapid extracellular precipitation of selenium may constitute an effective defense mechanism. Such information is useful when considering the potential use of these organisms for bioremediation and in developing an understanding of the ability of microbial biofilms to sequester metals and metalloids and so influence biogeochemical cycles.
Had selenium adsorption and coprecipitation with metal sulfides, or the precipitation of metal selenides, contributed significantly to selenium removal from solution, then a significant iron content would be expected in the granules, which was not the case. Enzymatic reduction of selenite to Se0 would have resulted in a selenium signal greatly exceeding those of other elements. However, sulfur was also present in large amounts. Previous observations of enzymatic seleno-oxyanion reduction also suggest that selenium deposition is intracellular (40). An apparent abiotic reaction of selenite in SRB culture has been noted by previous workers (27, 40). The results described here are best explained by such an abiotic interaction and are consistent with an exothermic oxidation-reduction reaction between selenite and sulfide.
A two-step model is therefore proposed for
the dual-precipitation of selenium and sulfur from solution by an
abiotic, but biologically mediated, pathway. Sulfate acts as a terminal
electron acceptor for anaerobic respiration, resulting in the
production of sulfide, which then participates in an abiotic reaction
with selenite. Using published log K values
(19,
22,
32,
36), the reductions of
sulfate to sulfide and of selenite to elemental selenium at pH
>7.5 can be represented by the half reactions:
![]() | (1) |
![]() | (2) |
![]() | (3) |
![]() | (4) |
![]() | (5) |
There may be a number of biological and chemical explanations to account for the lower Se/S ratio (20, 22, 36), and experiments were carried out to investigate this. The rapid precipitation of selenium and sulfur in cell-free spent medium showed that the reaction did not require the presence of cells. Tests with simple chemical reactants (Fig. 6) showed that an abiotic reaction took place between selenite and sulfide under reducing conditions. Precipitation still occurred in the presence of Fe2+, but very high concentrations of iron inhibited selenium precipitation. Where all iron and sulfur were present as extant FeS, Se precipitation was inhibited, but when Fe2+ and S2- ions were released by acidification of this medium and the mixture was brought back to circumneutral pH, selenium and sulfur precipitated as before.
It was in fact possible to control the
precipitate fractions by manipulating the equilibrium pH. When only
sulfide and selenite were present (in addition to
Na+ and Cl-), sulfur was the sole
precipitate at pH <3.0. When pH was >10.0, only
selenium was precipitated, and at values between these two limits,
mixtures of sulfur and selenium were precipitated in various fractions.
Where Fe2+ was present in excess, the above
situation was modified, with the exclusive formation of FeS above a pH
10.5. This can be interpreted in terms of the relative
stability fields of elemental sulfur, selenium, and FeS plus the very
low solubility of FeS at high pH
(21,
30,
32). Under low redox and
low pH conditions, sulfur is precipitated while selenium is replaced by
selenite and selenide, and at high pH, the reverse is true. The
formation of soluble polysulfides and polyselenides appears to be a
possibility under such circumstances
(18,
34). At moderate pH
values and under reducing conditions, both elements are well within
their stability fields and a mixture of the two is precipitated. This
interpretation adequately explains why the precipitates from the
biofilm incubations were relatively enriched for selenium; at the pH
value of about 8.5 reached during incubation, selenium is more stable
than sulfur and so makes up a higher proportion of the precipitate. It
is possible that somewhat higher pH values also develop within the
biofilm during active metabolism, further favoring selenium
precipitation.
This implies that selenium and sulfur can be precipitated by SRB during application in bioreactors containing mixed metal and metalloid liquors, as well as under a wide range of environmental conditions, but that formation of FeS (or other transition metal sulfides) may inhibit the reaction where Me2+ >> S2- and at a pH above neutral. However, in ocean surface and estuarine sediments, free iron is frequently in the subpicomolar range while sulfide and selenium are widely present in surface waters at nanomolar to micromolar concentrations (6, 7, 8, 15, 23, 41). This ratio may be further enhanced within SRB biofilms that contain locally elevated sulfide concentrations but where transition metals are partially excluded by adsorption and metal sulfide precipitation. The above reaction serves to extend the generalized model for the potential transformations of selenium by SRB (Fig. 7).
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FIG. 7. Model
of the currently understood transformations of selenium by SRB. The
diagram is illustrative and does not imply a cellular location for the
individual pathways. DMSe, dimethyl selenide; DMDSe, dimethyl
diselenide.
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The presence of terms to simulate rapid reduction and sequestration of selenium within sediments is critical to models predicting the removal and fate of selenium from selenite-impacted waters (4). Dissimilatory reduction of selenite has been assumed as the mechanism, but this may be questionable, as SRB activity has the potential to drive the removal of selenite from pore waters even in relatively sulfate-deprived freshwater environments (16, 31). This would depend on the ability of the process to compete with other chemical reactions and biological transformations. The evidence from the in vitro experiments described above is that the reaction is rapid and can take place in preference to the formation of transition metal sulfides. Nevertheless, studies to investigate the production of elemental selenium from biologically generated sulfide under environmental conditions would be necessary to assess the relative contribution of this mechanism to selenium cycling.
We also thank Martin Kierans, of the Center for High Resolution Imaging and Processing, University of Dundee, for technical advice and assistance with electron microscopy and H. Eccles (BNFL) for scientific advice and useful discussions.
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