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Applied and Environmental Microbiology, December 2003, p. 7161-7172, Vol. 69, No. 12
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.12.7161-7172.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Laboratory of Phytopathology, Department of Plant Sciences, Wageningen University, 6709 PD Wageningen,1 Section Flower Bulbs, Applied Plant Research, 2160 AB Lisse,2 Wageningen NMRCentre, Wageningen University, 6700 ET Wageningen,3 Natural Products Chemistry Group, Laboratory of Organic Chemistry, Wageningen University, 6703 HB Wageningen, The Netherlands4
Received 5 June 2003/ Accepted 4 September 2003
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Among the bacterial genera, Pseudomonas spp. have been reported to produce biosurfactants (14, 33, 36). Pseudomonas spp. are common inhabitants of soil and rhizosphere environments and have received considerable attention in the areas of bioremediation of xenobiotics and biological control of plant-pathogenic fungi. In the area of bioremediation, surfactant-producing Pseudomonas spp. have been implicated in facilitating the degradation of ubiquitous pollutants, such as polycyclic aromatic hydrocarbons and n-alkanes (2, 12). In the area of biological control of plant-pathogenic fungi, the potential of biosurfactants produced by Pseudomonas spp. was recently recognized. Rhamnolipids produced by strains of Pseudomonas aeruginosa were shown to be highly effective against plant pathogens, including Pythium aphanidermatum, Plasmopara lactucae-radicis, and Phytophthora capsici (43). Purified rhamnolipids caused cessation of motility and the lysis of entire zoospore populations within <1 min. The introduction of a rhamnolipid-producing strain into a recirculating hydroponic system gave good, although transient, control of P. capsici on pepper (43). Kim et al. (27) confirmed and extended these observations by showing that rhamnolipid B, produced by P. aeruginosa B5, has not only lytic effects on zoospores but also inhibitory activity against the spore germination and hyphal growth of several other pathogens. Mycelial growth of P. capsici and spore germination of Colletotrichum orbiculare were inhibited in vitro, and the diseases caused by these pathogens were suppressed in pepper and cucumber plants, respectively, by application of purified rhamnolipid B to leaves (27).
Several cyclic lipopeptide surfactants with antibiotic properties were recently proposed as biological compounds for the control of plant-pathogenic fungi (29, 31-33, 48). Viscosinamide, produced by soil-inhabiting Pseudomonas sp. strain DR54, was shown to induce encystment of Pythium zoospores and to adversely affect mycelia of Rhizoctonia solani and Pythium ultimum, causing reduced growth and intracellular activity, hyphal swellings, increased branching, and rosette formation (18, 46, 47). The specific cyclic lipopeptide amphisin, produced by Pseudomonas sp. strain DSS73, appeared to play an important role in the surface motility of the producing strain, allowing efficient containment of root-infecting plant-pathogenic fungi (1). Furthermore, in combination with cell wall-degrading enzymes of Trichoderma atroviride, lipodepsipeptides produced by the pathogen Pseudomonas syringae pv. syringae acted synergistically in antagonism to various plant-pathogenic fungi (15). Collectively, these studies clearly indicate the potential of biosurfactant-producing bacteria for crop protection.
In this study, surfactant-producing Pseudomonas isolates were obtained from the rhizosphere of wheat and screened for activity against zoospores of multiple oomycete pathogens, including Pythium species and Phytophthora infestans. The biocontrol ability of the representative strain Pseudomonas fluorescens SS101 was tested in hyacinth flower bulbs against root rot caused by Pythium intermedium. Two genes involved in surfactant production by P. fluorescens strain SS101 were obtained by random Tn5 mutagenesis followed by anchored PCR and subsequent sequencing of the Tn5 flanking regions. Tn5 mutants were characterized phenotypically, and their activities against zoospores of oomycete pathogens were compared to that of their parental strain. The surfactants produced by strain SS101 were isolated by reverse-phase high-pressure liquid chromatography (RP-HPLC), and their activities were assessed in bioassays. The identity of the main surface-active constituent was determined by liquid chromatography-mass spectrometry (LC-MS) and nuclear magnetic resonance (NMR).
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View this table: [in a new window] |
TABLE 1. Microorganisms
used in this study
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Production of
zoospores.
Zoospores of
Pythium ultimum var. sporangiiferum and P.
intermedium were produced using a modification of a method
described by Zhou and Paulitz
(52). P. ultimum
var. sporangiiferum and P. intermedium were grown for
3 days at 25°C on V8 juice agar (N. V. Campbell
Foods, Puurs, Belgium) amended with 10 g of CaCO3
liter-1. A fully grown agar plate was cut into
2-cm-wide strips, and half of the strips were transferred to another
petri plate. The agar strips were flooded with 20 ml of sterile water
and kept at 25°C. After 1 h, the water was discarded
and replaced with the same volume of water. The plates were incubated
at 18°C for an additional 4 days, the water was removed and
replaced with the same volume of water, and the plates were incubated
at 18°C for 2 h for release of zoospores. Zoospores
of A. candida were obtained by immersing infected leaves
containing zoosporangia in sterile water, followed by incubation for
2 h at 15°C. P. infestans zoospores were
obtained by flooding a 14-day-old culture with 15 ml of sterile water,
followed by incubation at 4°C for 3 h. Zoospore
suspensions of 103 to 105 ml-1
were typically
obtained.
Soils.
Three soils were obtained from
agricultural fields in The Netherlands. CB, SV, and SSB soils were
collected in December 1997 from the upper 50 cm of the soil profile,
air dried for a week by passive ventilation, and passed through a
0.5-cm-pore-size mesh screen prior to use. CB, SV, and SSB soils were
collected from a polder in the southwest of The Netherlands located 10
km from the city of Bergen op Zoom. These soils were physicochemically
similar, containing on average 27% clay, 10% silt, and
51% sand (10).
Under field conditions, all of the soils had been cropped continuously
to wheat, with the exception of CB soil, which was cropped to wheat and
sugar beets in a rotation scheme (1:2). The soil used in the biocontrol
assays with hyacinth bulbs was collected from fields near
the experimental station of Applied Plant Research (Lisse, The
Netherlands). The soil was steamed and left in the open air for 6
months for recolonization. This sandy soil had an organic-matter
content of 1% and a pH of
7.0.
Wheat cultivation.
Pots containing 200 g of
sieved soil were sown with 15 seeds of wheat (cv. Bussard). The plants
were grown in a controlled climatic chamber at 15°C with a 12-h
photoperiod. The plants received 50 ml of one-third strength
Hoagland's solution (macroelements only) twice a week. After 30
days, the roots were harvested and the remaining soil and excised roots
were mixed, returned to the same pot, and sown again with 15 wheat
seeds. This process of successively growing wheat and harvesting roots
was repeated seven times.
Isolation of
surfactant-producing Pseudomonas spp.
For each replicate, roots of five
randomly selected wheat plants were harvested and loosely adhering soil
was gently removed. One gram of roots plus adhering rhizosphere soil
was suspended in 5.0 ml of sterile distilled water, vortexed for 1 min,
and sonicated for 1 min in an ultrasonic cleaner. For isolation and
enumeration of fluorescent pseudomonads, samples were dilution plated
onto KMB+ and the plates were incubated at
25°C for 48 h. Approximately 10% of the
colonies of fluorescent pseudomonads were randomly selected and tested
for halo formation on SW medium. The experiment had four replicates and
was performed twice.
Zoosporicidal
activity of surfactant-producing Pseudomonas
isolates.
Bacterial
isolates able to form a halo around the colony on SW medium were
screened for the ability to lyse zoospores. Bacterial suspensions
containing 109 CFU ml-1 (optical density
at 600 nm [OD600] = 1) were prepared from
colonies grown on KMB for 48 h at 25°C. A
10-µl aliquot of the bacterial suspension was mixed on a glass
slide with an equal volume of zoospore suspensions of P.
ultimum var. sporangiiferum. The behavior of the
zoospores was observed under a light microscope (Dialux 20 EB; Ernst
Leitz GmbH, Wetzlar, Germany) at x100 magnification
for up to 5 min.
Biocontrol activity
against pythium root rot.
Hyacinth bulbs (cv. Pink Pearl) were
disinfested with 0.5% formaline, dried, and stored at
17°C in a climate chamber. Four weeks prior to the bioassays,
the bulbs were transferred to a 9°C climate chamber. An
inoculum of P. intermedium strain P52 was prepared by growing
the oomycete for 3 weeks at 24°C in an autoclaved mixture
containing 50% sandy soil, 50% river sand, and oatmeal
(10 g liter-1). For the assay, sandy soil was mixed
with the inoculum at a 1% (vol/vol) rate. P.
fluorescens strain SS101 was applied as a bulb
treatment or as a soil treatment. For the bulb treatment, hyacinth
bulbs were immersed in a suspension of 108 CFU
ml-1 for 15 min prior to being planted. For soil
treatments, initial bacterial densities were 107 CFU g
(fresh weight) of soil-1. Hyacinth bulbs were
transferred to plastic pots filled with 2.75 kg of soil treated with
Pythium and/or P. fluorescens isolate SS101 or
untreated. After the bulbs were planted, the pots were wrapped in
plastic bags to maintain high-humidity conditions in the soil for the
duration of the experiment. After 8 weeks of plant growth at
9°C in the dark, the bulbs were harvested and the roots were
rinsed with tap water. The roots were excised from the bulbs, the fresh
weight was determined, and disease caused by P. intermedium
P52 was scored visually on a 0-to-5 scale. In this disease index, 0
indicates no disease, 1 indicates 1 to 20% loss of root biomass
relative to the control, 2 indicates 21 to 40% loss of root
biomass, 3 represents 41 to 60% loss, 4 represents 61 to
80% loss, and 5 represents 81 to 100% loss
(50). The disease index
data were ranked. After the normal distribution and homogeneity of
variances were certified, root weight data and ranked disease index
data were analyzed by analysis of variance, followed by Tukey's
studentized range test (SAS Institute, Inc., Cary,
N.C.).
Biochemical
characterization.
Gas
chromatography-fatty acid methyl ester (GC-FAME) analysis and API
20NE tests (BioMerieux, S.A., Lyon, France) were performed
to classify P. fluorescens strain SS101, one of the isolated
Pseudomonas strains that caused lysis of zoospores. API 20NE
tests were performed following the recommendations of the supplier. For
GC-FAME analysis, isolate SS101 was cultivated on tryptic soy broth
agar (Becton Dickinson, Cockeysville, Md.) and incubated for
24 h at 28°C. Cells were collected with a
4-mm-diameter transfer loop (Microbial ID, Inc., Newark, Del.) and
processed for extraction of fatty acids following the procedures
outlined by the manufacturer. Fatty acid methyl esters were analyzed
using a microbial identification system equipped with an HP5890 series
II gas chromatograph, HP3365 Chem. Station, and version 3.9
of the aerobe library (Microbial ID,
Inc.).
Tn5 mutagenesis and
phenotypic characterization of mutants.
Surfactant-deficient mutants of a
spontaneous rifampin-resistant derivative of P. fluorescens
strain SS101 were obtained by biparental mating with E. coli
strain S17
pir harboring the mini-Tn5lacZKm
element in plasmid pUT (9)
according to protocols described by Sambrook and Russel
(38). Transformants were
selected on KMB supplemented with rifampin (100 µg
ml-1) and kanamycin (100 µg
ml-1) and subsequently transferred to SW medium.
Transformants unable to produce a halo around the colony were selected
after 3 to 5 days of growth on SW medium at 25°C. Putative
surfactant-deficient mutants were characterized for the ability to
cause lysis of zoospores of P. ultimum var.
sporangiiferum, P. intermedium, A. candida,
and P. infestans as described above. Bacterial cell
suspensions used for zoospore lysis tests were vortexed vigorously and
checked for foam formation, a phenomenon correlated with surfactant
production (51). The drop
collapse test was performed as described by Jain et al.
(23) and Hildebrand
(19). Protease and
phospholipase C activities were detected by growing the mutants and the
parental strain on skim milk and egg yolk agar, respectively
(37).
ß-Galactosidase activity was tested on KMB plates containing
X-Gal (5-bromo-4-chloro-3-indolyl-ß-D-galactosidase)
and IPTG (isopropylthio-ß-D-galactosidase) according
to standard protocols
(38). Fluorescence was
evaluated by growing the bacterial strains on Pseudomonas agar
F plates for 48 h and subsequent observation under near-UV
light (360 nm).
DNA
isolations.
Total genomic
DNA, used for Southern blot analysis and anchored PCR, was extracted
from bacterial strains by a modified version of a CTAB-based protocol
(3). A 1.5-ml sample of an
overnight bacterial culture was centrifuged for 3 min at 14,000 rpm
(Eppendorf microcentrifuge), the supernatant was discarded,
and the pellet was resuspended in 550 µl of TE buffer (10 mM
Tris, 10 mM EDTA, pH 8.0) amended with lysozyme (1.82 mg
ml-1) and incubated at 37°C for 30 min.
Seventy-five microliters of 10% sodium dodecyl sulfate (SDS)
amended with proteinase K (0.86 mg ml-1) was added
to the bacterial suspension and thoroughly mixed. After 15 min of
incubation at 65°C, 100 µl of 5 M NaCl and 80
µl of CTAB- NaCl (0.3 M CTAB, 0.7 M NaCl) were added.
After 10 min of incubation at 65°C, DNA was obtained by
extraction with chloroform-isoamyl alcohol (24:1 [vol/vol]),
isopropanol precipitation, and subsequent washes with 70%
ethanol. The extracted DNA was dissolved in 100 µl of 10 mM
Tris (pH 8.0) containing RNase (20 µg ml-1)
and stored at
-20°C.
Southern
hybridization.
Southern
blot analysis was performed to determine the number of integrations of
the Tn5lacZKm element in the surfactant-deficient mutants of
P. fluorescens strain SS101. Genomic DNA of the mutants was
digested with 5 U of EcoRI or KpnI (Promega), enzymes
without restriction sites in the Tn5lacZKm element
(9). The digestions were
performed in a total volume of 100 µl containing 2.0 µg
of DNA. The digested DNA was precipitated with 4 M LiCl, washed with
70% ethanol, dissolved in 15 µl of sterile distilled
water, and separated on 1% agarose gels in 1x
Tris-borate-EDTA. DNA transfer from agarose gels to Hybond
N+ nylon membranes (Amersham Pharmacia Biotech) was
performed according to standard methods
(38). The high-stringency
conditions consisted of prehybridization for 1.5 h at
65°C, hybridization for 12 h at 65°C,
membrane washings (twice each for 5 min with 2x SSC
[1x SSC is 0.15 M NaCl plus 0.015 M sodium
citrate]- 0.1% SDS at room temperature and twice
each for 30 min with 0.1x SSC-0.1% SDS at 65°C).
The 575-bp KM probe, specific for the kanamycin resistance gene
contained within the Tn5LacZKm element, was obtained by
digoxigenin labeling using primers KM1
(5'-CCCGATGCGCCAGAGTTGTT) and KM2
(5'-TCACCGAGGCAGTTCCATAGG) (Roche Corp.,
Basel, Switzerland); hybridized probes were immunodetected according to
the protocols provided by the
supplier.
Anchored PCR and sequencing of
Tn5 flanking regions.
DNA flanking the Tn5lacZ-Km
insertions in different mutants of P. fluorescens isolate
SS101 was obtained by anchored PCR
(44). Anchored PCR was
performed in three steps. The first consisted of ligation of synthetic
anchors to genomic DNA digested with the enzyme ApoI or
SmaI. For ApoI (with a 5' AATT overhang), the
anchor was EcoRI-16 (5'-AATTGGCGGTGAGTCC);
for SmaI (with a blunt end), the anchor was An-B
(5'-TGCGGACT). The second step was a
linear PCR with the primer EOF
(5'-ACTTGTGTATAAGAGTCAG) or EIR
(5'-AGATCTGATCAAGAGACAG) targeting the
inverted repeats of the Tn5 transposon. PCR was performed in a
50-µl reaction mixture with the high-fidelity PCR system (Roche
Diagnostics, Mannheim, Germany) following the recommendations of the
supplier. The third step consisted of a nested PCR with primer RH24
(5'-AGCACTCTCCAGCCTCTCACCGCA) for DNA
digested with ApoI or primer VECT24
(5'-AGCACTCTCCAGCCTCTCACCGCC) for DNA
digested with SmaI and primer EOF or EIR, respectively. The
PCR program consisted of an initial denaturation at 95°C for 5
min, followed by 30 cycles at 94°C for 30 s, initial
annealing at 72°C for 40 s with the annealing
temperature decreasing by 0.5°C per cycle, and a final
extension at 72°C for 2 min. The amplified fragments were
purified from agarose gels by using the QIAEX II kit (Qiagen GmbH,
Hilden, Germany) and cloned into pCRT7/CT-TOPO (Invitrogen, Breda, The
Netherlands). Cloned PCR products were sequenced by BaseClear (Leiden,
The Netherlands) with primers T7
(5'-TAATACGACTCACTATAGGG) and V5
(5'-ATCCCTAACCCTCTCCTCGGT). Sequences were
trimmed, assembled by using the DNAstar program (DNAstar Inc., Madison,
Wis.), and deposited in GenBank. BLASTN and BLASTP searches
were conducted on the sequences, and they were aligned by CLUSTAL W
version 1.81
(45).
Partial
purification of surfactants.
KMB agar plates with cells of P.
fluorescens strain SS101 grown for 48 h at 25°C
were flooded with sterile demineralized water. The cell suspensions
were centrifuged twice (Harrier 18/18 centrifuge) at 6,000
rpm for 20 min at 4°C. The cell culture supernatant
was filtered (0.2-µm pore size), acidified to pH 2.0 with
9% HCl, and kept on ice for 1 h
(24). The precipitate was
collected by centrifugation (6,000 rpm, 30 min,
4°C, Harrier 18/80 centrifuge) and washed twice with sterile
acidic (pH 2.0) demineralized water. The precipitate was resuspended in
sterile demineralized water, adjusted to pH 8.0 with 0.2 M NaOH, and
lyophilized (Labconco Corp., Kansas City, Mo.). The
lyophilized extract was stored at -20°C. For
determining the critical micelle concentration (CMC), the extract was
dissolved in sterile distilled water (pH 8.0) at concentrations of 0,
0.01, 0.1, 1, 10, 25, 50, 100, and 1,000 µg
ml-1. Surface tension measurements were carried out
with a K6 tensiometer (Krüss GmbH, Hamburg, Germany).
Measurements were performed at 25°C, and sterile distilled
water was used to calibrate the
tensiometer.
HPLC and LC-MS
analyses.
All solvents used
were HPLC grade. Acetonitrile (MeCN) and methanol were obtained from
LAB-SCAN Analytical Sciences (Dublin, Ireland). Ultrapure water was
obtained from a combined Seradest LFM 20 Serapur Pro 90 C apparatus
(Seral, Ransbach, Germany). All LC solvents were degassed by vacuum
filtration over a 0.45-µm-pore-size membrane filter (Type RC;
Schleicher & Schuell) prior to use. All HPLC separations were
carried out in Alltech end-capped C18 columns (length, 250
mm; particle size, 5 µm; pore size, 100 Å). For
analytical and preparative separations, 4.6-mm-diameter columns were
used. For LC-MS, 2.1-mm-diameter columns were used. For analytical
separations, a Gynkotek (Separations) pump was used in combination with
a Kratos Spectroflow UV detector and a Sedere Sedex 55 ELS detector.
Freeze-drying was carried out on a Christ Alpha 1-2
freeze-drier.
The LC-MS system consisted of a TSP SpectraSYSTEM,
including an SN4000 controller, an LC quaternary pump (P4000), an
autosampler (AS3000), a UV2000 detector, and a Finnigan LCQ ion trap
mass spectrometer. The mass spectrometer was equipped with a Finnigan
electrospray ionization (ESI) interface. Data were processed by the
Finnigan Xcalibur software system (ThermoQuest, Breda, The
Netherlands). For off-line MS studies, a 0.005% solution of the
crude surfactant fraction in MeOH was introduced into the ESI interface
by continuous infusion using a syringe pump (Hamilton, Reno, Nev.) at a
flow of 3 µl min-1. The averaged spectra
were recorded over a period of 3 min: the scan range was m/z
310 to 1,200 at two scans per second. Positive ionization
was used. In MS2 experiments, helium was used as the
collision gas. Only a single parent ion was kept in resonance
(isolation width, m/z 1 to 3), all other ions were ejected
from the trap without mass analysis. The ion was then agitated and
allowed to fragment by collision-induced dissociation. The collision
energy was adjusted experimentally to give a >90% yield
of fragmentation by varying the relative collision energy from 10 to
40%. During MSn measurements (n
3), this procedure was repeated for one of the daughter ions.
For the on-line LC-MS studies, 5 µl was injected.
The solvent was MeCN-H2O (75:25) containing 0.02%
formic acid at 0.2 ml/min. Both positive and negative ionization were
used. The mass range was m/z 50 to 1,200.
Ten milligrams
of crude surfactant extract was dissolved in 1 ml of
MeCN-H2O (6:4) and 2 drops of buffer solution
(pH 6.01). After membrane filtration, this solution was fractionated by
RP-HPLC. The solvent was MeCN-H2O (7:3) at 1.0 ml/min.
Detection took place by UV at 210 nm. Eight fractions were collected on
the basis of the UV signal (1, 0 to 3 min; 2, 3 to 15.5 min; 3, 15.5 to
17.2 min; 4, 17.2 to 19.7 min; 5, 19.7 to 21.6 min; 6, 21.6 to 24 min;
7, 24 to 26.4 min; and 8, 26.4 to 31.5 min). Eighteen 50-µl
injections were made, and the eight fractions were collected manually
in round-bottom flasks. After removal of the MeCN with a rotary
evaporator (Büchi) in vacuo, the aqueous solution was
lyophilized. White powders were obtained only with fraction 8
containing a measurable amount (
3 mg). All fractions were
dissolved in 1.25 ml of sterile demineralized water (pH 8.0) and tested
for various physical and biological properties, including drop
collapse, foam formation, and activity against zoospores of P.
infestans. The identity of fraction 8 was further studied by
NMR.
NMR spectroscopy.
Fraction 8 was dissolved in
deuterated methanol (CD3OD; 99.9 atom% D; Isotec) and
transferred to an NMR microtube (Shigemi). For comparative NMR studies
with the cyclic lipopeptide massetolide A
(17), fraction 8 was
dissolved in deuterated acetone ((CD3)2CO; 99.8
atom% D; Acros) and transferred to a standard
5-mm-diameter NMR tube, and its 13C NMR spectrum
was recorded at 100 MHz. NMR spectra were recorded at a probe
temperature of 25°C on a Bruker DPX-400 spectrometer located at
the Wageningen NMR Centre (Wageningen, The Netherlands). Chemical
shifts are expressed in parts per minute relative to methanol
(
1H, 3.31;
13C, 49.00) or to
acetone (
1H, 2.05;
13C,
29.84). One- and two-dimensional double-quantum-filtered
COSY, TOCSY, HMBC, and HMQC spectra were acquired using
standard pulse sequences delivered by Bruker (Rheinstetten,
Germany). For the 1H-COSY and -TOCSY spectra, 512
experiments of 32 scans each were recorded, resulting in a measuring
time of 9 h for each spectrum. The mixing time for the TOCSY
was 80 ms. For the [1H,13C]-HMBC and
-HMQC experiments 1,024 experiments of 152 and 40 scans each,
respectively, were recorded, resulting in measuring times of 69 and
20 h, respectively.
Nucleotide
sequence accession numbers.
The sequences obtained in this study
were deposited in GenBank under accession numbers
AY303770
and
AY303771.
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5 x 106
to 2 x 107 CFU g (fresh weight) of
roots-1. Putative surfactant-producing
Peudomonas spp. were isolated by randomly transferring
fluorescent Pseudomonas colonies to SW medium
(40). The population
densities of surfactant-producing fluorescent Pseudomonas spp.
ranged from 1.0 x 105 to 7.0 x
105 CFU g-1 and represented, on average,
1 to 5% of the total population of fluorescent
Pseudomonas spp. recovered on KMB+. The
total number of fluorescent pseudomonads and the number of surfactant
producers remained stable during the seven successive growth cycles of
wheat. No significant differences among the population densities of
total and surfactant-producing pseudomonads were observed in the three
soils (data not shown).
Zoosporicidal
activity and phenotypic characterization.
Of a total of 375 randomly selected
Pseudomonas isolates that produced a halo on SW medium, 6
isolates were able to lyse zoospores of P. ultimum var.
sporangiiferum (Fig.
1). All six isolates were obtained from roots of wheat grown in SSB soil.
A cell suspension (109 CFU ml-1) of these
isolates caused cessation of zoospore motility within 30 s,
and the shape of the zoospores was changed from bean shaped to round
(Fig. 1A). The cell
contents of the zoospores changed to a granular appearance (data not
shown), and within 60 s, lysis of entire zoospore populations
occurred (Fig. 1B and C).
Identical responses were observed for zoospores from P.
infestans, P. intermedium, and A. candida. The
lytic effects on zoospores were also obtained with cell culture
supernatants of each of the six isolates. Randomly amplified
polymorphic DNA (RAPD) analysis with the 10-mer primers M12 and D7
(26) indicated that the
six isolates were genotypically identical. The representative strain
SS101 was selected for further studies. Biochemical characterization by
API 20NE testing and GC-FAME analysis classified strain SS101 as P.
fluorescens biovar II. Strain SS101 exhibited multiple
characteristics indicative of surfactant production, including halo
formation on SW medium, foam formation, drop collapse, and the ability
to significantly lower the surface tension of water from
73 to
30 mN m-1 (Table
2). The other Pseudomonas strains, including the reference
strains Pseudomonas putida WCS358 and P. aeruginosa
PAO1 and DSM1128, had similar characteristics; however, none of these
isolates caused lysis of zoospores. Cell suspensions of P.
putida strain WCS358 lowered the surface tension of water to
almost the same level as cell suspensions of strain SS101 but did not
adversely affect zoospore behavior. Strain SV7, isolated from the
rhizosphere of wheat grown in SV soil (this study), caused cessation of
zoospore motility but no subsequent lysis (Table
2).
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FIG. 1. Effect
of P. fluorescens SS101 on zoospores of P. ultimum
var. sporangiiferum. (A) Within 30 s after
exposure to strain SS101, zoospores become immotile and round.
(B) Within 60 s, lysis of zoospores occurs.
(C) Within an additional 10 to 30 s, the remnants
of the zoospores completely disappear. The arrows indicate zoospores of
P. ultimum var. sporangiiferum, and the arrowheads
indicate cells of P. fluorescens strain SS101 (magnification,
x400). The density of the bacterial cell suspension was
109 CFU ml-1, and zoospore suspensions
contained 104 zoospores
ml-1.
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TABLE 2. Phenotypic
characteristics of P. fluorescens strain SS101 and other
Pseudomonas strains
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FIG. 2. Effect
of P. fluorescens SS101 on pythium root rot of hyacinth. An
inoculum of P. intermedium P52 was mixed through soil (Pythium
+). Soil not treated with P. intermedium (Pythium
-) served as a healthy control. P. fluorescens SS101
was applied to soil [SS101(soil)], bulbs
[SS101(bulb)], or both [SS101(s + b)]. The
density of the cell suspensions of SS101 used for bulb treatment was
108 CFU ml-1, and the initial density of
SS101 in soil treatments was 107 CFU g (fresh weight) of
soil-1. Plants were grown for 8 weeks at 9°C
in the dark. (A) In the first experiment, bulbs were
harvested and the root weight was determined. (B) In the
second experiment, bulbs were harvested and the disease index was
scored on a 0-to-5 scale, where 0 indicates no disease and 5 indicates
81 to 100% loss of root biomass relative to the control. The
means of five replicates are shown. Means with the same letter are not
statistically different according to Tukey's studentized range
test (P = 0.05). The error bars represent the standard
errors of the mean. The experiment was repeated four times, and
representative results of two experiments are
shown.
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TABLE 3. Properties
of wild-type strain P. fluorescens SS101 and its five
surfactant-deficient Tn5 mutants
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FIG. 3. Alignment
of the deduced protein sequences of P. fluorescens SS101 and
other condensation domains of peptide synthetase sequences. The
sequence of P. fluorescens SS101 was obtained from the
Tn5 flanking region of the surfactant-deficient mutant 10.24.
syrm1 to syrm5 are condensation domains from the syringomycin
synthetase protein of P. syringae pv. syringae B301D
(accession number
T14593).
syppt is a condensation domain of the syringopeptin synthetase protein
from P. syringae pv. syringae B301D (AAF99707). conse
represents a majority sequence obtained from the alignment of 43
condensation domains of different peptide synthetases (PF00574). dhbF1
and dhbF2 are condensation domains of a peptide synthetase involved in
the synthesis of the siderophore 2,3-dihydroxybenzoate by B.
subtilis (NP_391076), and mycE1 and mycE2 are condensation
domains of a protein responsible for the synthesis of microcystin by
M. aeruginosa K139 (BAB12211). The residues in
solid boxes have high levels of similarity. Dashes indicate gaps in the
sequence.
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FIG. 4. Alignment
of deduced protein sequences of P. fluorescens SS101 and other
proteins found in the database. For P. fluorescens SS101, the
sequence was obtained from the Tn5 flanking region of the
surfactant-deficient mutant 17.18. Ral.1 and Ral.2 are different
domains of a peptide synthetase protein from R. solanacearum
GMI1000 (NP_522203). syrm1 to syrm4 are different domains of
the syringomycin synthetase protein from P. syringae pv.
syringae B301D (T14593). Brad. is a protein from B.
japonicum 110spc4 (AAG61082), and Xeno. is a domain from the XpsB
protein from X. bovienii T228 (AAL57600). The residues in
solid boxes are highly similar in all aligned sequences. Dashes
indicate gaps in the
sequence.
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25 µg ml-1 (Fig.
5). The effects on
zoospores (cessation of motility and lysis) were observed at the CMC
and concentrations higher than the CMC (Fig.
5).
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FIG. 5. Relationships
among the concentration of the partially purified extract obtained from
P. fluorescens SS101, surface tension, and cessation of
zoospore motility and lysis. The partially purified extract was
dissolved in sterile demineralized water (pH 8.0) at different
concentrations, and surface tension was measured with a tensiometer. At
concentrations of 25 µg ml-1 and higher, the
extract caused cessation of motility and subsequent lysis of zoospores
of P. ultimum var. sporangiiferum. The mean values of
two replicates per concentration are
shown.
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50% of the extract. All fractions, with the exception
of fraction 1, were positive in the drop collapse test, indicating a
decrease in surface tension (Table
4). Only fractions 5 and 8 were positive in the foam formation test.
Fractions 4 to 8 caused cessation of zoospore motility and subsequent
lysis. Fraction 8 caused lysis of zoospores in a much shorter time than
the other fractions. Zoospores were rendered immotile within
10 s and lysed within 30 s after contact with
fraction 8, whereas for the other fractions it took
30 s for
cessation of motility and
60 s for lysis. The lysis caused by
fraction 7 was not the characteristic explosion observed with fractions
4, 5, 6, and 8 but resembled leaking at one point in the zoospore
membrane (Table
4).
![]() View larger version (14K): [in a new window] |
FIG. 6. RP-HPLC
profile of a preparative separation of the crude surface-active extract
obtained from cell culture supernatant of P. fluorescens
SS101. The solvent used is MeCN-H2O (7:3) containing
0.1% formic acid at 1 ml/min, and detection was performed with
UV at 210 nm. Numbers represent
fractions.
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TABLE 4. Properties
of eight fractions of the surface-active extract obtained by RP-HPLC
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TABLE 5. NMR
data for fraction 8, recorded in CD3OD at 400
(1H) and 100 (13C) MHz at 25°C
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FIG. 7. Chemical
structure of fraction 8 obtained from cell culture supernatant of
P. fluorescens
SS101.
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In this study, six Pseudomonas isolates were obtained from the rhizosphere of wheat with zoosporicidal activity: zoospores were rendered immotile within 30 s of exposure to cell suspensions or cell culture supernatants of the six isolates, and subsequent lysis occurred within 60 s (Fig. 1). Comparison of strain SS101, identified by GC-FAME analysis as P. fluorescens biovar II, with other Pseudomonas strains and in particular strain WCS358 indicated that reduction of the surface tension alone may not be indicative for causing lysis of zoospores (Table 2). The observed effects on zoospores have also been described for plant saponins (7). For Pseudomonas, similar lytic effects on zoospores have so far been described for rhamnolipids produced by strains of P. aeruginosa (27, 43). Rhamnolipids also were reported to have antifungal activity (27) and to serve as pathogenicity factors during the colonization of human lung tissue (22) and were implicated in affecting attachment of bacterial cells to surfaces and the maintenance of biofilm architecture (6). Southern hybridization and PCR with probes and primers specific for rhlA, rhlB, rhlI, and rhlR, genes involved in the biosynthesis and regulation of rhamnolipid production (34, 35), indicated that these genes are not present in P. fluorescens strain SS101 and the other surfactant-producing Pseudomonas isolates obtained from the wheat rhizosphere (data not shown).
In bioassays, P. fluorescens strain SS101 significantly and consistently controlled pythium root rot of hyacinth (Fig. 2). Pythium root rot is a serious problem in the cultivation of several bulbous crops in The Netherlands and can cause considerable yield losses of Hyacinth, Iris, and Crocus (50). Chemical measures to control this disease do not always provide consistent control, and several of these compounds will be banned in the near future. Given the results of this study, large-scale application of P. fluorescens strain SS101 is currently being explored for controlling pythium root rot. The roles of biosurfactants produced by Pseudomonas spp. in the suppression of plant-pathogenic fungi and oomycetes have so far been inferred from studies with purified compounds or microcosm studies in which in situ production levels were correlated with fungal inhibition (27, 43, 46, 47). As a first step toward determining the roles of the biosurfactants produced by P. fluorescens SS101 in the control of oomycete pathogens, mutants defective in surfactant production were generated. The results of recent biocontrol assays showed that the surfactant-deficient mutant 10.24 was not able to control pythium root rot of hyacinth (M. de Boer and J. M. Raaijmakers, unpublished data). These results may suggest that the biosurfactants produced by strain SS101 play a key role in its biocontrol activity against P. intermedium. To more conclusively show the role of the surfactants in biocontrol by strain SS101, current work focuses on complementation of the mutants, as well as on possible effects that surfactant deficiency may have on rhizosphere colonization and, concomitantly, on biocontrol activity.
Sequencing of the flanking regions of the transposon in
two surfactant-deficient mutants, 10.24 and 17.18, led to the
localization of the Tn5 elements in condensation domains of
peptide synthetases (Fig.
3 and
4). Peptide synthetases
are multifunctional enzymes involved in the nonribosomal synthesis of
diverse and often complex metabolites, including antibiotics,
siderophores, and biosurfactants
(11,
21,
28,
30,
42). These enzymes are
composed of modules, which contain all enzymatic activities to
incorporate one constituent into the final compound. These modules are
in a colinear arrangement with the primary structure of the compound
and can be divided into domains responsible for single chemical
reactions (42).
Condensation domains are found as a part of repetitive modules. They
are
450 aa in length and coincide in frequency with the number
of peptide bonds that have to be formed for the linear peptide of the
final length (42).
Although pleiotropic effects of the mutations in the five mutants
described in this study were not observed (Table
3), complementation and
expression studies are being initiated to confirm and further
characterize the roles of these peptide synthetases in biosurfactant
production by strain SS101. Nevertheless, the nature of the disrupted
genes is very consistent with the data obtained in chemical
identification of the constituents of the surface-active extract of
strain SS101.
RP-HPLC, LC-MS, and NMR indicated that the most
nonpolar and abundant constituent (fraction 8) in the surface-active
extract of strain SS101 was a cyclic lipopeptide containing 9 aa and a
10-carbon fatty acid (Fig.
7). Comparison with values
in the literature revealed that fraction 8 is most likely identical to
massetolide A, a cyclic lipopeptide isolated from a marine
Pseudomonas sp. with activity against Mycobacterium
spp. (17). Differences in
chemical shifts of 1H and 13C resonances in
spectra recorded in methanol (Table
5) from those reported by
Gerard et al. (17),
recorded in acetone, could be explained by solvent effects. These
differences were absent when a 13C NMR spectrum of fraction
8 (data not shown) in acetone-d6 was compared with the spectrum of
massetolide A (17). The
identical values indicate that not only the basic structure is the
same, but also the presence of the different D and
L amino acids in the macrocyclic ring. Although there is no
doubt about the presence of glutamic acid, based on the mass spectral
evidence and the chemical shifts of the
, ß, and
protons and the
and ß carbons of this
residue, the signals of the
and
carbons are
missing, and the signal of the ß carbon is reduced. This could
be explained by the presence of a metal on the
carboxyl of
glutamic acid, influencing the relaxation of the neighboring carbons.
On-line LC-ESI-MS in both positive and negative modes showed that the
other zoosporicidal fractions, 4 to 7, were closely related to fraction
8, with molecular masses ranging from 1,111 to 1,169 Da. Most likely,
several of these compounds are identical to massetolides B to H,
described by Gerard et al.
(17). Larger-scale
isolation and separation will provide proof of this
hypothesis.
The CMC of the surface-active extract obtained from
P. fluorescens SS101 was
25 µg
ml-1 (Fig.
6). The CMC, the minimum
amount of surfactant required to cause the maximum decrease in surface
tension, is an important measure of the surface activity and allows
comparison with other surfactants
(16). The CMC and the
minimum surface tension obtained for the surface-active extract of
P. fluorescens SS101 are comparable to those found for
rhamnolipids. For example, rhamnolipids produced by P.
aeruginosa UG3 lowered the surface tension to 31.4 mN
m-1 and achieved a CMC at 30 µg
ml-1
(49). A biosurfactant
produced by Bacillus licheniformis JF-2, with properties
similar to those of surfactin, lowered the surface tension to 27 mN
m-1 and reached the CMC at
20 µg
ml-1
(24). It should be
emphasized that the CMC and surface tension reported in this study for
strain SS101 are based on a mixture of at least five lipopeptide
surfactants. Larger-scale isolation and separation of the individual
fractions will allow us to determine CMCs for each of the zoosporicidal
constituents.
UU, P. A. H. M. Bakker, Section Plant Pathology, Utrecht University (Utrecht, The Netherlands); DSMZ, Deutsche Sammlung von Mikroorganismen und Zelculturen (Braunschweig, Germany); PPO, Applied Plant Research, Section Flower Bulbs (Lisse, The Netherlands); CBS, Dutch Collection of Microorganisms (Utrecht, The Netherlands); WU, Laboratory of Phytopathology, Wageningen University (Wageningen, The Netherlands).
We thank G. P. Lelyveld for performing the preparative HPLC separation, C. van de Haar for the freeze-drying of the fractions, and J. A. Boeren (Laboratory of Biochemistry) and F. W. Claassen for their help with the LC-MS analyses. We thank S. Breeuwsma and C. F. Geerds for performing part of the hyacinth bioassays and the RAPD analysis, B. Brandwagt for his help with anchored PCR, and M. Mazzola (U.S. Department of Agriculture-Agricultural Research Service, Wenatchee, Wash.) for GC-FAME analysis of strain SS101.
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