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Applied and Environmental Microbiology, March 2003, p. 1642-1646, Vol. 69, No. 3
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.3.1642-1646.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Food Science, University of Massachusetts, Amherst, Massachusetts 01003
Received 10 June 2002/ Accepted 29 November 2002
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While the presence of C. perfringens enterotoxin (CPE) in patients' stools is a definitive indicator for implicating C. perfringens as the etiological agent in food-borne disease, CPE cannot be routinely detected directly in foods. Thus, it is difficult to link patient isolates with suspect foods. Serotyping of food and stool isolates has been used but has significant drawbacks. For example, in one large-scale study in the United States, only about one-third of the isolates tested were confirmed by serotype results (12). Similarly, using commercially available antisera, Saito reported that only 17% of 131 nonoutbreak strains tested could be serotyped (27).
Among the many genetic methods for subtyping C. perfringens, pulsed-field gel electrophoresis (PFGE) has shown substantial discriminatory power (7, 8, 16, 30) and has been used to subtype food-borne C. perfringens strains associated with outbreaks (22, 26, 28). In the case of at least one outbreak, both cpe-negative and cpe+ strains were isolated from patients' feces and possessed the same PFGE profile (26).
Here we report on the enterotoxigenicity and presence of the cpe gene encoding enterotoxin of 40 isolates of C. perfringens from retail, nonoutbreak foods. PFGE was used to subtype isolates to provide information on the molecular relatedness of the isolates.
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PCR for cpe and cpa genes.
Template DNA was obtained from cultures of one of the five confirmed isolates obtained from each food containing C. perfringens. Cells were grown for 18 to 20 h at 37°C in FTG. The FTG was prepared by using individual components, except agar. One milliliter of culture was centrifuged at 5,000 x g for 15 min, and the cell pellet was washed twice with sterile saline and resuspended in 200 µl of high-pressure liquid chromatography-grade water and then placed in a boiling water bath for 20 min. After centrifugation, 10 µl of supernatant fluid was used as the template for PCR. The sequences of the primers for the C. perfringens alpha toxin gene (cpa), slightly modified from those previously published (24), were 5'-GCTAATGTTACTGCCGTTGA and 5'-CCTCTGATACATCGTGTAAG. The sequences of the primers for the enterotoxin gene (cpe) were 5'-GGAGATGGTTGGATATTAGG and 5'-GGACCAGCAGTTGTAGATA (24). The 50-µl PCR volume included 5 µl of Taq DNA polymerase assay buffer (Fisher), 10 µl of template DNA, 1 µM concentrations of each primer, 0.2 mM concentrations of deoxynucleoside triphosphates, 1.5 mM MgCl2, and 2 U of Taq DNA polymerase (Fisher). Amplification was carried out in a Temperature-Tronic thermal cycler (Barnstead/Thermolyne Corp.), with 30 cycles of 1 min at 94°C, 2 min at 55°C, 3 min at 72°C, and a final dwell time of 4 min at 72°C. The results were determined by electrophoresis of 20 µl of PCR products in a 1.5% agarose gel for 30 min at 80 V and staining with ethidium bromide. The 324- and 233-bp PCR products of cpa and cpe, respectively, were observed. In the case of negative results for cpe, PCR was repeated by using an internal positive cpe control, C. perfringens NCTC 8239. PCR markers (Promega Corp.) consisting of six DNA fragments with sizes of 50, 150, 300, 500, 750, and 1,000 bp were used as the standards. Amplified bands were visualized by UV illumination and photographed on high-density thermal paper film (Mitsubishi Electronics America, Inc.).
PFGE.
The preparation of DNA (buffers, enzymes, and agarose) was modified based on a CHEF bacterial genomic DNA plug kit (Bio-Rad Laboratories). One milliliter of an overnight culture (10 ml of FTG) of each isolate was centrifuged and washed once with SE wash buffer (75 mM NaCl, 25 mM EDTA [pH 8]). Cells were resuspended to an absorbance at 600 nm of 1.3 by using cell suspension buffer (10 mM Tris [pH 7.2], 20 mM NaCl, 50 mM EDTA). One milliliter of cell suspension was added to a 1.5-ml microcentrifuge tube and centrifuged for 5 min at 13,000 x g to pack cells. The supernatant was carefully removed, and the cells were resuspended in cell suspension buffer to one-half the final volume of the plugs. The suspension was equilibrated to 50°C. The cell suspension was combined with an equal volume (40 µl) of 2% CleanCut agarose (Bio-Rad Laboratories) and mixed gently at 50°C. The mixture was transferred to plug molds by using sterile transfer pipettes, and the agarose was allowed to solidify. Five milliliters of lysozyme buffer (10 mM Tris [pH 7.2], 50 mM NaCl, 0.2% sodium deoxycholate, 0.5% sodium lauryl sarcosine, 1 mg of lysozyme/ml) was added to each milliliter of agarose plugs. The solidified agarose plugs were placed in the centrifuge tubes containing lysozyme buffer and incubated for 16 h at 37°C. After cell lysis, the lysozyme buffer was removed and the plugs were rinsed in sterile distilled water with vigorous agitation. Five milliliters of proteinase K reaction buffer (100 mM EDTA [pH 8.0], 0.2% sodium deoxycholate, 1% sodium lauryl sarcosine, 1 mg of proteinase K/ml) was added for each milliliter of agarose plugs, and the plugs were incubated overnight at 50°C without agitation. Next, the plugs were washed four times in 50 ml of wash buffer (20 mM Tris [pH 8.0], 50 mM EDTA) for 40 min each time at room temperature with gentle agitation, and then the plugs were stored at 4°C. DNA samples in agarose were digested with 20 U of enzyme ApaI (New England Biolabs) for 4 h at 25°C in 200 µl of the buffer as recommended by the manufacturer. After digestion, the buffer was removed and the plugs were incubated in 1 ml of 0.66x TBE buffer (1x TBE is 89 mM Tris-89 mM boric acid-2 mM EDTA, pH 8.3) for approximately 30 min with gentle agitation. Sample plugs containing DNA were placed on a smooth clean surface and cut to size by using a razor blade or spatula. Low-melt preparative-grade agarose (1%, 100 ml) was cast around the comb. The plug remained in place when the comb was removed. PFGE was performed with a Bio-Rad CHEF-DR II apparatus with pulse times ramped from 0.5 to 40 s over 20 h. A lambda standard ladder and Saccharomyces cerevisiae DNA size standards (Bio-Rad) were used as molecular size markers. Analysis of the banding pattern was done by using GelCompar II (Biosystematica). In general, strains were considered clonal if they showed 100% similarity with a 1% tolerance for fragment shifts.
DIG-labeled cpe gene probe protocol.
Isolates were grown in FTG at 37°C for 16 to 18 h. Twenty-five or 50 µl was transferred under vacuum to a dot blot microfiltration apparatus (Bio-Rad Laboratories) containing a 0.45-µm-pore-size nylon membrane. Membranes were left to dry at room temperature. cpe+ (NCTC 8798) and cpe-negative (ATCC 3624) strains were included as controls. A 40-oligomer digoxigenin (DIG)-labeled cpe probe (probe A [36]) was obtained from NBI/Genovus (Plymouth, Minn.). The DNA dot blots were prehybridized and then hybridized with the DIG-labeled cpe probe according to the manufacturer's instructions (Boehringer Mannheim). Anti-DIG-alkaline phosphate and a mixture of the color substrates nitroblue tetrazolium chloride and BCIP (5-bromo-4-chloro-3-indolylphosphate) were used to detect DIG-labeled nucleic acid hybrids according to the manufacturer's instructions (formerly Genius 3 system; Boehringer Mannheim).
Enterotoxin detection.
The presence of the cpe gene does not necessarily mean that it is expressed (18). Indeed, certain C. perfringens type E isolates contain silent cpe sequences (3). We therefore also sought to determine the ability of isolates to produce CPE. CPE is only produced during the sporulation process, so a number of sporulation media were employed (see below). The presence of CPE in sporulating-cell extracts was determined by reversed passive latex agglutination (RPLA) using a commercially available kit (Oxoid, Ogdensburg, N.Y.). For this purpose, 200 ml of sporulation medium was inoculated (1%) with an overnight FTG culture. After incubation at 37°C for 7 h, the percentage of sporulating cells (200 cells were observed) was determined by phase-contrast microscopy. The cells were collected by centrifugation, washed once with 5 ml of 0.1 M phosphate buffer (pH 6.8), and disrupted by sonication while chilled in an ice-water bath (6 to 7 30-s cycles with 30-s cooling periods). Disrupted cells were collected by centrifugation at 10,000 x g for 20 min, and the supernatant fluid was frozen at -20°C for subsequent analysis by RPLA according to the manufacturer's protocol. CPE+ (NCTC 8798) and CPE- (ATCC 3624) strains were included in all assays.
Sporulation media.
Although formulae for sporulation media are included with commercial CPE assay kits, no single medium will support the sporulation of all or most strains of C. perfringens. It has been our experience that nonoutbreak strains are especially reluctant to sporulate (R. Labbe, unpublished data). All strains in this study were grown in Duncan-Strong sporulation medium (10) or a modified version in which raffinose (0.4%) replaced soluble starch (21). Various adjuncts previously shown to enhance sporulation of C. perfringens were also added to each basal medium. The optimal concentration of each adjunct varied with each isolate, ranging from 50 to 200 µg/ml for caffeine, theobromine (20), or papaverine (Labbe, unpublished); 0.12 to 2.0 mg/ml for bovine bile salts or sodium taurocholate (14); and 15 to 150 µl of a 40-fold concentrate of a putative sporulation factor (29, 35). All chemicals were obtained from Sigma. Fresh, filter-sterilized cattle rumen fluid was also added (after repeated centrifugations to remove particulate matter) as an adjunct (5, 10, and 20%) to each basal medium. Thus, 16 variations of sporulation media were employed.
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TABLE 1. Levels and characteristics of C. perfringens isolated from retail foods
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TABLE 2. Proportion of MPN-positive C. perfringens isolates in retail food samples by category
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FIG. 1. PCR products obtained from amplification of cpa (324 bp). Lanes 1 and 8, PCR markers (50 to 1,000 bp); lane 2, positive control (strain FD-1041); lanes 3 to 7, representative C. perfringens isolates from retail foods.
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FIG. 2. PCR products obtained from amplification of cpe (233 bp). Lanes 1 and 8, PCR markers (50 to 1,000 bp); lane 2, positive control (strain FD-1041); lanes 3 to 7, representative C. perfringens isolates from retail foods.
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FIG. 3. Dot blot for cpe gene by use of DIG-labeled cpe-specific gene probe. Fifty or 25 µl of 18-h cell cultures of each C. perfringens isolate was added to separate grids. B1 and B2, positive control (strain NCTC 8239); D1 and D2, positive control (strain FD 1041); C1 and C2, negative control (strain FD1); E1 and E2, negative control (strain NCTC 3624). Columns 3 to 12, C. perfringens food isolates (50 µl).
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10% (Table 3). Altogether, a total of 31 isolates sporulated at 10% or higher, and the cell extracts of these were assayed for CPE. In the case of four isolates, no sporulation was observed with any medium formulation. Similarly, use of the sporulation medium of Tortora (33) failed to induce the sporulation of these four isolates. |
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TABLE 3. Media formulae supporting 10% sporulation of retail isolates of C. perfringens
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PFGE.
The clonal relationship of the 39 isolates from each C. perfringens-positive food sample was determined by PFGE. Restriction enzyme profiles of the isolates' genomic DNA obtained by using ApaI showed 6 to 10 fragments ranging in size from
50 to 610 kb (Fig. 4). According to the criteria of Tenover et al. (32), none of the isolates can be considered genetically indistinguishable. Two isolates were closely related, with 2- to 3-band differences. These isolates were both from beef products taken from the same retail outlet but at different times. The restriction enzyme profiles of the genomic DNA of these isolates were reanalyzed by using MluI. In this case, the two isolates differed by 4 bands, confirming their genetic unrelatedness.
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FIG. 4. Dendrogram of PFGE subtype patterns of C. perfringens isolated from retail food. Fragments ranged in size from 50 to 610 kb. Isolate numbers are shown below each lane.
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In recent years, the development of synthetic DNA probes and PCR for detection of the cpe gene has led to surveys of the cpe gene in isolates associated with food-borne outbreaks and from healthy and diseased animals. In one study of isolates from human and nonhuman animals having digestive tract disorders, the frequency of cpe+ isolates was 1% by DNA colony hybridization (9). As part of the same study, none of the 45 isolates from nonoutbreak foodstuffs of animal origin hybridized with the enterotoxin gene probe. An additional study of clostridial enteric diseases in animals (30) indicated that about 8% of isolates tested were PCR positive for cpe. In the case of the intestinal contents of healthy pigs and swine feed, none of the 97 C. perfringens isolates tested in a previous study were positive for the enterotoxin gene (15). Using a cpe DIG probe, Tschirdewahn et al. (34) reported that cpe+ strains were present in 14, 22, 10, and 0% of fecal isolates from horses, cattle, poultry, and pigs, respectively, while Van Damme-Jongsten et al. (37) reported that only 6% of the 98 C. perfringens isolates they obtained from a variety of animals were cpe+.
There are few reports of the prevalence of cpe+ strains in nonoutbreak foods. In a recent study, C. perfringens was present in an average of 37% of meat and poultry samples (25), yet cpe+ strains amounted to only 17% of isolates. Using an RPLA assay, Saito (27) reported that only 2% of C. perfringens strains isolated from meat and fish were CPE+, though whether each isolate sporulated, a requirement for the assay, was not reported.
In this work, we found that of the 40 isolates of C. perfringens obtained from retail outlets, none possessed the cpe gene. Of the 31 strains in which a level of 10% sporulation was achieved, none possessed detectable CPE in their cell extracts. None of the isolates possessed identical PFGE profiles, with only two being closely related. These results demonstrate the wide genetic variation among CPE- strains. Similarly, using ribotyping, Kilic et al. (17) found only four identical ribotype patterns among 111 C. perfringens isolates from ground meat.
Despite the low incidence of cpe+ strains in food products, they are nevertheless able to function as a reservoir for enterotoxin-producing strains. Given the number of outbreaks caused by this organism, our finding that a reasonably high level (30%) of the retail food sampled contained C. perfringens suggests that there may be many instances where this organism may grow to significant levels in temperature-abused foods. The relative rarity of CPE+ strains may be one reason that this organism is not more of a public health problem.
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