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Applied and Environmental Microbiology, May 2003, p. 2810-2815, Vol. 69, No. 5
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.5.2810-2815.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, A-8010 Graz, Austria
Received 30 September 2002/ Accepted 30 January 2003
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FIG. 1. Enzymatic hydrolysis of sulfate esters. The asterisk indicates the location of the chiral center.
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Alkylsulfatases have mostly been found in gram-negative bacteria; the only exceptions to date are strains of Bacillius cereus (27) and coryneform strain B1a (31) when they are grown on dodecyl sulfate and propyl sulfate, respectively. Although alkylsulfatases have been biochemically characterized to a certain extent, their potential for preparative biohydrolysis of organic sulfate esters in a stereo- and enantioselective fashion is completely unexploited. The only report of stereo- and enantioselective hydrolysis of a sec-alkyl sulfate by an alkyl sulfatase (S1 from Pseudomonas sp. strain C12B) described moderate enantioselectivity (an enantiomeric ratio [E] of ca. 7) for 2-octyl sulfate (33). The potential of these enzymes to affect inversion of a stereogenic center on a sec-carbon atom during catalysis makes them prime candidates for the development of so-called deracemization techniques (13). The potential of alkylsulfatases for stereoselective organic synthesis has been highlighted recently (22, 23), and methods to enhance the enantioselectivity of these enzymes (24) have been developed.
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Organism, growth conditions, and cell disruption.
Cells of Rhodococcus ruber DSM 44541 were grown under aerobic conditions in baffled Erlenmeyer flasks at 30°C and 130 rpm by using medium containing (per liter) 10 g of glucose, 10 g of peptone, 10 g of yeast extract, 2 g of NaCl, 1.5 g of MgSO4 · 7H2O, 1.3 g of NaH2PO4, and 4.4 g of K2HPO4. Cell growth was monitored by measuring the optical density (absorption) at 546 nm. Absorbance values greater than
1 were measured after suitable sample dilution. Cells were harvested in the stationary phase. Curves for cell growth and enzyme activity of R. ruber DSM 44541 were determined for a 10-liter fermentation (Braun Biostat ES 10) at 30°C and pH 7.0. Oxygen saturation was kept at 70% and was regulated by stirrer rotation. The sterilized medium was inoculated with 1 liter of a preculture, which was grown in the standard medium for 2 days. Glucose concentration was measured with a glucose (HK) assay kit (Sigma).
Cells were disrupted by using a Vibrogen cell mill with external ice-water cooling (4°C) as follows. To a cell suspension of R. ruber DSM 44541 (47 g [wet weight] of cell paste) in 120 ml of 10 mM Tris buffer (pH 7.5), 120 ml of glass beads (diameter, 0.35 mm) was added. The cells were broken by four shaking cycles consisting of 2 min of agitation and 5 min of cooling each. After removal of the beads by filtration, the crude cell lysate was centrifuged at 4°C and 38,000 x g for 2 h.
Determination of protein concentration.
Protein concentration was measured by the method of Bradford (Coomassie blue protein assay) at 595 nm by using a Bio-Rad protein assay. The protein concentration was determined by using a calibration curve that was established with known concentrations of bovine serum albumin ranging from 0 to 20 µg/ml.
Determination of the molecular mass of the enzyme and the isoelectric point.
Denatured proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (12% polyacrylamide gels; Mini-PROTEAN II dual slab cell; Bio-Rad). Each gel was electrophoresed at 200 V and then stained with Coomassie brilliant blue. Low-molecular-weight SigmaMarker was used as a protein standard for determination of molecular masses.
The isoelectric point of sulfatase RS2 was determined by using a Bio-Rad isoelectric focusing (IEF) Ready Gel system for pH values ranging from 3 to 10. The gel was electrophoresed within a PROTEAN IEF cell and was developed with crocein scarlet. Bio-Rad's IEF standards were used as a reference according to the Bio-Rad manual instructions.
Assay for enzymatic activity based on determination of the inorganic sulfate liberated.
Enzyme activity was measured based on determination of the amount of enzymically liberated inorganic sulfate by using the barium chloride-gelatin method of Dodgson (10) (method B with the modifications of Tudball and Thomas [30]). For the assay, 200 µl of enzyme stock solution was incubated with 200 µl of 3- or 4-octyl sulfate at a final concentration of 15 mM. The reaction was carried out in 0.1 M Tris-HCl buffer (pH 7.5) at 30°C and was stopped after 15 min by addition of 50 µl of 15% (wt/vol) trichloroacetic acid. After centrifugation for a short time, a 200-µl aliquot was used for determination of the amount of inorganic sulfate. When 2-octyl sulfate was used, the reaction time was extended to 1 to 2 h. The amount of inorganic sulfate was spectrophotometrically measured by determining the absorption at 360 nm in 2-cm quartz cells against a blank by using a barium chloride-gelatin reagent (Difco Bacto Gelatin; Difco Laboratories Detroit, Mich.). One unit of enzyme activity was defined as the amount of enzyme which released 1 µmol of SO4-2 ions per min.
Assay for enzyme activity based on determination of the alcohol liberated.
Alternatively, enzymatic activity was measured by determination of the amount of alcohol liberated by using 15 mM substrate in 0.1 M Tris buffer at pH 7.5. Thus, a 400-µl aliquot of an enzyme solution was mixed with 400 µl of a 30 mM substrate solution in 0.1 M Tris buffer (pH 7.5). The substrate and enzyme were shaken at 24°C at 130 rpm for 6 or 12 h, depending on the type of substrate.
Determination of conversion.
A 200-µl aliquot of the reaction mixture was extracted with 200 µl of ethyl acetate. After vigorous vortexing (30 s) and centrifugation (12,200 x g, 5 min), 100 µl of the organic phase was mixed with a stock solution containing 5 µl (or 25 µl) of menthol in ethanol (15.4 mg/ml [or 77 mg/ml]), which served as an internal standard. Conversion was determined by gas chromatography (GC) on an achiral phase (HP 1301 [30 m by 0.25 mm, 0.25 µm] and HP-1 [30 m by 0.53 mm, 0.5 µm]; N2) by starting at 90°C (2.5-min hold) and increasing the temperature at a rate of 10°C/min until a plateau of 110°C was reached. Due to the high lipophilicity of the products formed (2-, 3-, and 4-octanol), a single extraction was sufficient for total recovery (
97%). The conversion was calculated from the calibration curves for 2-, 3-, and 4-octanol. Control experiments in the absence of enzyme revealed that the spontaneous hydrolysis of substrates was negligible (
3%) in the time period used.
Determination of enantiomeric excess and absolute configuration of the product.
The enantiomeric composition of the alcohols formed (enantiomeric excess of product [eeP]) was determined by GC by using the following chiral stationary phases with H2 as the carrier gas: Chrompack CP7500 (25 m by 0.25 mm, 25 µm) and Chrompack Chirasil-Dex CB/G-PN (30 m by 0.32 mm). For determination of the enantiomeric composition, the alcohol had to be derivatized with trifluoroacetic anhydride prior to analysis in order to achieve enantioseparation. Thus, a 400-µl sample from the enzyme reaction mixture was extracted with 500 µl of CH2Cl2 and dried over anhydrous sodium sulfate. After addition of 40 µl of trifluoroacetic anhydride, the sample was heated in a capped vial at 60°C for 20 min. After it was cooled to room temperature, the sample was extracted twice with 0.5 ml of a 5% sodium bicarbonate solution. After final drying of the organic phase over anhydrous sodium sulfate, the sample was subjected to GC analysis.
The absolute configuration of products was elucidated by allocation of the peaks via coinjection with an independent reference sample containing (R)- or (S)-alcohol. The following retention times for corresponding alkyl trifluoroacetates were obtained with a CP7500 column: for 2-octanol (isotherm at 65°C), 7.66 min for the (S) form and 8.00 min for the (R) form; for 3-octanol (isotherm at 60°C), 7.65 min for the (S) form and 8.08 min for the (R) form; and for 4-octanol (isotherm at 55°C), 7.84 min for the (S) form and 8.11 min for the (R) form.
Enzyme purification.
Crude cell lysate was dialyzed against 10 mM Tris-HCl buffer (pH 7.5). In order to remove mucous components and carotenoids from the cells, which impeded protein chromatography, the lysate was pretreated with DEAE-cellulose in a batch procedure (100 mg of protein per 2.5 g of DEAE-cellulose). Proteins were eluted from the carrier by using 10 mM Tris-HCl (pH 7.5) containing 0.5 M NaCl. This crude enzyme extract was mixed with stirring (on ice) with NaCl to obtain a final NaCl concentration of 4 M and was applied to a phenyl Sepharose high-performance column (20 ml; Pharmacia). The column was equilibrated with 80 ml of buffer B (10 mM Tris-HCl buffer containing 4 M NaCl [pH 7.5]). Proteins were eluted in a stepwise fashion by using a gradient with buffer A (10 mM Tris-HCl buffer [pH 7.5]). Enzyme RS2 was liberated at 0% buffer B (see Fig. 3). After repeated dialysis against 10 mM Tris-HCl buffer (pH 7.5), active fractions were subjected to further purification by ion-exchange chromatography by using a Q6 column (total volume, 6 ml; Bio-Rad) equilibrated with the same buffer. Proteins were eluted with buffer C (10 mM Tris-HCl buffer [pH 7.5], 1 M NaCl) by using a linear 0 to 1 M NaCl gradient at a flow rate of 4 ml/min. Desorption of enzyme RS2 took place at 15 to 31% buffer C. In the following step, a Blue Sepharose column (8 ml; Pharmacia) was used. Fractions containing RS2 were applied to the column in 10 mM piperazine buffer (pH 6.0). Under these conditions, sulfatase RS2 did not bind to the column and thus could be collected immediately. The column was washed with Tris-glycine buffer (pH 8.9) (3 g of Tris per liter, 2.6 g of glycine per liter). Finally, the active fractions were concentrated to 1 ml (Centriplus 10; Amicon) and applied to a Superdex 200 column. The equilibration and elution buffer was 50 mM NaH2PO4 containing 0.15 M NaCl (pH 7.0).
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FIG. 3. Separation of RS2 from RS1 by hydrophobic chromatography. A stepwise NaCl gradient was used. The gray bars indicate alkylsulfatases RS1 and RS2.
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7 g/liter), and enzyme expression was initiated only upon depletion of the glucose. The cells were harvested in the late exponential phase of growth.
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FIG. 2. Alkylsulfatase activity and cell growth of R. ruber DSM 44541. Symbols: , glucose concentration; , optical density (A546); , relative sulfatase activity. The relative activities of whole cells were measured by using (±)-2-octyl sulfate as a substrate.
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Active fractions containing RS2, which were well separated from RS1, were further purified by interaction with an anion-exchange resin, followed by dye chromatography and final purification on a Superdex 200 size exclusion column (Table 1).
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TABLE 1. Purification of sec-alkylsulfatase RS2 from R. ruber DSM 44541
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Molecular mass and isoelectric point determination.
The elution profile of the purified enzyme on Superdex 200 indicated that the molecular mass of the native enzyme is ca. 67 kDa. However, SDS-PAGE revealed the presence of a single band at about 43 kDa for RS2 (Fig. 4).
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FIG. 4. SDS-PAGE analysis of proteins during purification of alkylsulfatase RS2. Lane A, crude cell extract; lane B, batch DEAE-cellulose; lane C, phenyl Sepharose; lane D, Q6; lane E, Blue Sepharose; lane F, Superdex 200; lane G, low-molecular-mass markers. The gel was stained with Coomassie brilliant blue R. The gel was a 12% polyacrylamide gel.
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Temperature and pH optima.
The effects of pH and temperature on the enzyme activity are shown in Fig. 5 and 6. The pH stability was tested at 24°C in 100 mM Tris-maleate buffer by using a pH range from 6.0 to 9.0 with 15 mM (±)-2-octyl sulfate as the substrate. The maximum activity was observed at a rather narrow range, between pH 7.5 and 8.0.
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FIG. 5. pH optimum for sulfatase RS2 activity.
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FIG. 6. Temperature optimum for sulfatase RS2 activity.
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Substrate tolerance.
The sec-alkyl sulfates accepted as substrates by enzyme RS2 were compounds with chain lengths ranging from 7 to 10 carbon atoms, and there was clearly maximum activity with C8 derivatives (22). The preferred substrates for the enzyme were linear sec-alkyl sulfate esters, particularly 2-, 3-, and 4-octyl sulfates. Again, there was a certain similarity to inducible secondary alkylsulfatase S3 from Pseudomonas strain C12B, whose activity was centered on symmetrical alkylsulfate esters, such as 4-heptyl sulfate or 5-nonyl sulfate, as well as various nonsymmetrical C3-and C4-substituted alkyl sulfate esters (26). On the other hand, this is in contrast to the behavior of secondary alkylsulfatases S1 and S2 from Pseudomonas strain C12B and of CS2 from C. terrigena, which showed a striking affinity for 2-alkyl sulfates.
Stereochemical pathway of enzymatic sulfate ester hydrolysis.
In order to determine the stereochemical pathway of sulfate ester bond cleavage with respect to retention or inversion of the stereogenic chiral center, enantiomerically pure (R)-2-octyl sulfate was used as a substrate for purified enzyme RS2. GC analysis of a chiral stationary phase revealed that (S)-(+)-2-octanol was the only product of the enzymatic hydrolysis. Consequently, we concluded that the reaction proceeded through nucleophilic attack at the sec-carbon atom via Walden inversion occurring together with inversion of the configuration at the C2 atom. This mechanism, which is facilitated by the leaving-group properties of the sulfate ion, is common to all sec-alkylsulfatases investigated so far (3, 33); opposite pathways were reported for D-lactate-2-sulfatase from Pseudomonas syringae (8) and arylsulfatases (28). Thus, the mechanistic action of RS2 involves breaking of the CO bond, thus affecting absolute inversion of the configuration (Fig. 7).
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FIG. 7. Stereochemical course of enzymatic sulfate ester hydrolysis.
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Determination of enantioselectivity.
The enantioselectivity of sulfatase RS2 was expressed by E, which is the ratio of the relative first-order reaction rates of enantiomers and was calculated from eeP and conversion (c) according to the following equation (5).
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Our data provide the first quantitative values for the enantioselectivity of a sec-alkylsulfatase, and they indicate that use of this enzyme for resolution and/or deracemization of sec-alcohols via biohydrolysis of their corresponding sec-sulfate esters is indeed very promising. Hydrolysis of (±)-2-octyl sulfate by enzyme RS2 proceeded with an E of 21, whereas the selectivity of (±)-3-octyl sulfate was reduced to a modest E (4.3). Virtually no enantioselectivity was observed for (almost symmetric) 4-octyl sulfate, which was converted to (almost) racemic 4-octanol. It should be emphasized that the enantioselectivity of the native unmodified enzyme RS2 could be dramatically increased by addition of certain selectivity-enhancing additives (24).
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Since addition of EDTA did not eliminate enzyme activity, we presume that RS2 does not possess any metal ions that are needed as cofactors for catalytic activity.
A careful survey of the previously published data for alkylsulfatases revealed that enantioselectivity (i.e., the preferred hydrolysis of one substrate enantiomer over its antipode) has been observed for this type of enzyme, but this behavior has never been accurately quantified. The first indication of the enantioselectivity of sec-alkylsulfatases was the chance observation that some racemic alkyl sulfates could be rapidly hydrolyzed to 50% conversion, whereas the remainder of the hydrolysis took place at a very reduced rate or not at all (20, 26). In spite of this observation, only a single report on the enantioselectivity of alkylsulfatases has been published to date (33). Thus, the stereo- and enantioselective hydrolysis of (±)-2-octyl sulfate by sulfatase S1 from Pseudomonas strain C12B furnished 2-octanol in 58% enantiomeric excess at 50% conversion, which corresponds to a moderate enantioselectivity (an E of ca. 7). The stereoselective biohydrolysis of sulfate esters is very interesting in view of the practical application of sulfatases for preparative-scale transformations. It should be emphasized that this transformation is impossible when a conventional (chemical) methodology is used. When (±)-2-octyl sulfate was used as a substrate, enzyme RS2 showed a clear preference for (R)-2-octyl sulfate, as reflected by a remarkable E, 21. When rather symmetrical molecules, such as 3- or 4-octyl sulfate, are used, the chiral recognition process gets more difficult as the relative sizes of the two alkyl groups adjacent to the stereogenic sulfate ester group become more similar. Although the enantioselectivity for 3-octyl sulfate is low (E = 4.3), the enantiopreference is still (R); however, product analysis for the biohydrolysis of (±)-4-octyl sulfate revealed the formation of 4-octanol in (almost) racemic form. This is not surprising considering that this molecule is not far from symmetric.
Two models of substrate binding within the active site of the enzyme have been proposed for enzyme CS2 from C. terrigena (21) and for the inducible alkylsulfatase S3 from Pseudomonas strain C12B (26). The basis of both proposals is a three-point interaction between enzyme and substrate. Whereas the main force of attraction is presumably the (strong) ionic binding of the (negatively charged) sulfate ester group, both of the remaining (hydrophobic) interactions are comparably weak due to the lipophilic character of the alkyl groups of the substrate. As a consequence, the chiral recognition process is dominated by the relative size of substituents of the substrate, similar to lipases (17). This explains why (±)-2-octyl sulfate was resolved with good selectivity, whereas the E values decreased dramatically when nearly symmetrical substrates were used. We therefore assume that sulfatase RS2 possesses two hydrophobic binding sites that are different in size, one preferring a large group and one preferring a smaller alkyl group.
In conclusion, we believe that the sec-alkylsulfatase RS2 from R. ruber DSM 44541 described in this paper represents a promising new tool for stereo- and enantioselective biohydrolysis of sulfate esters of sec-alcohols. No counterpart of this reaction exists in traditional chemical methodology. Because the mechanism of action proceeds with inversion of configuration, homochiral product mixtures, which have the same absolute configuration consisting of an (S)-alcohol and a remaining nonhydrolyzed (S)-sulfate ester, are obtained from kinetic resolution of the racemate. After cleavage of the sulfate group from the residual (S)-ester with complete retention of configuration, a single enantiomeric sec-alcohol should be the sole product from the racemate, with a 100% theoretical yield. Chemical catalysts for the latter transformation are being developed in our laboratories. The whole sequence constitutes a deracemization, which represents a dramatic improvement in the economic balance compared to traditional kinetic resolution, which is limited to 50% of each enantiomer (13).
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