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Applied and Environmental Microbiology, June 2003, p. 3359-3367, Vol. 69, No. 6
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.6.3359-3367.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Graeme R. Campbell,1 Jill Shepherd,1 Yvonne Beaton,1 Davey Jones,3 Ken Killham,1 and Rebekka R. E. Artz1*
School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU,1 Department of Molecular and Cell Biology, Institute of Medical Sciences, University of Aberdeen, Aberdeen AB25 2ZD, Scotland, and,2 School of Agricultural and Forest Sciences, University of Wales, Bangor LL57 2UW, Wales, United Kingdom3
Received 26 August 2002/ Accepted 18 March 2003
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There is little information regarding the behavior and metabolic status of E. coli O157:H7 in the environment, although some reports suggest the potential for considerable survival in cattle feces, soil, and water (9, 14, 18, 42). Vertical transmission of E. coli O157:H7 from cattle feces through soil has also been demonstrated (10), and this finding highlights a possible transmission route leading to the contamination of private drinking water. All of these studies, however, have utilized culture-based methods, which rely on disruption of cells from environmental material followed by plating on selective media, such as cefixime- and potassium tellurite-containing sorbitol MacConkey agar (6). These approaches will, however, fail to target E. coli O157:H7 populations that may be in a viable but nonculturable state. The occurrence of the viable but nonculturable state in enteric bacteria is highly disputed by some (3), while other reports suggest it does occur in E. coli commensal and O157:H7 populations in water and under saline conditions (21, 31, 42). Additionally, the ability to disrupt bacterial cells which are tightly adhered to soil particles may also be inefficient, leading to an underestimation of target population size. Molecular techniques, such as quantitative PCR, eliminate some of the biases of culture-based methods for estimation of pathogen abundance in soil, although, in most cases, an enrichment step is still required (22). Despite this, PCR-based approaches rely on direct extraction of nucleic acids or cells (followed by nucleic acid extraction) from soil, which may also be biased depending on the extraction method employed (23). The possibility of PCR detection of intact DNA from nonviable pathogens also limits the value of this approach (16).
As an alternative approach, the lux genes, which encode bioluminescence, have been successfully used in studies of the fate of microorganisms in the environment, including soil (33). Use of constructs which have been chromosomally marked with the full luxCDABE cassette offer the same advantages for localization of the target organism as marking with jellyfish green fluorescent protein (GFP) (33) but also offer potential assessment of metabolic activity. Although a GFP-marked E. coli O157:H7 strain has been described recently (14), the fluorescent phenotype of that strain was not used other than for verification of culturable plate counts. In contrast to the GFP fluorescence phenotype, which does not change on starvation or entry into the viable but nonculturable state, the bioluminescence phenotype is dependent on the energy status of the cell (39). Application of lux marker systems has therefore enabled measurement of population activity (26), detection of viable but nonculturable cells (7), and nonextractive estimation of active biomass of target populations in soil (25, 27).
The present study first describes the construction of a chromosomally lux-marked nontoxigenic strain of E. coli O157:H7. Second, the applicability of this stable chromosomally lux-marked strain for survival studies in soil and artificial groundwater samples is demonstrated. A potential luminescence assay has been applied to provide a quick in situ estimation of the size of potentially active bioluminescent E. coli O157:H7 populations.
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Chromosomal lux marking of E. coli O157:H7.
E. coli O157:H7 strain 3704 Tn5 luxCDABE was constructed by biparental mating of a spontaneous rifampin-resistant mutant of E. coli O157:H7 strain 3704 with a donor strain, followed by suicide plasmid delivery and transposon mutagenesis. The donor strain, E. coli S17
pir luxCDABE Km2, was a kind gift from P. Hill (University of Nottingham, United Kingdom) and contains the luxCDABE cassette from Photorhabdus luminescens and the antibiotic resistance genes for ampicillin and kanamycin (43). The rifampin-resistant mutant of E. coli O157:H7 strain 3704 was made by plating serial dilutions of an overnight culture onto Luria-Bertani (LB) plates containing rifampin (100 µg ml-1). Transconjugants in which Tn5 luxCDABE had inserted into the chromosome were initially selected on the basis of growth on LB containing rifampin (100 µg ml-1) and kanamycin (50 µg ml-1) and then by visible bioluminescence in the dark. The absence of the plasmid (which conferred ampicillin resistance) was confirmed by small-scale plasmid DNA preparations and by the lack of growth of the transconjugants on LB plates containing ampicillin (50 µg ml-1).
The stability of the lux phenotype was examined by successive subculturing of the selected E. coli O157:H7 strain 3704 Tn5 luxCDABE in LB broth without addition of kanamycin and subsequent confirmation of colony growth on LB agar with versus without kanamycin (50 µg ml-1). To confirm that mutagenesis had not disrupted the O157, H7, or intimin phenotype of the strain, multiplex PCR as described by Campbell et al. (4) was performed.
Southern blot conditions.
Genomic DNA from the donor, host, and chromosomally lux-marked transconjugants was isolated according to standard procedures (34) and digested to completion with NdeI. The digested genomic DNA was probed with a 1,273-bp fragment of the luxCDABE cassette (containing a single NdeI site) which had been amplified with the primer pair JR42 (5'-CGC TGT CGG AAA TTA TAC GG-3') and JR43 (5'-GTT ACG GTA AAT GTC GTA GG-3'). The specific PCR conditions used to generate the lux fragment were 95°C for 1 min 30 s, then 29 cycles of 94°C for 30 s, 55°C for 1 min, and 72°C for 1 min, followed by a final extension at 72°C for 10 min. The probe was purified from a 1% agarose gel and labeled according to the manufacturer's instructions (ECL direct nucleic acid labeling and detection system; Amersham Pharmacia, United Kingdom). Southern blotting conditions were as recommended by the manufacturer of the labeling kit.
Growth experiments comparing chromosomally lux-marked and wild-type E. coli O157:H7.
Batch culture growth experiments were carried out in triplicate in tryptone soy broth (TSB) (Oxoid Ltd., United Kingdom). The cultures were incubated at 37°C at 200 rpm, and 1-ml samples were removed at regular intervals for analysis of optical density at 600 nm and bioluminescence (relative light units [RLU]). Bioluminescence was measured with a Jade luminometer (Labtech International Ltd., United Kingdom).
Potential bioluminescence assay.
A slight modification of the method by Duncan et al. (7) was used. Briefly, 9 ml of warm TSB (37°C) was inoculated with either pure culture or inoculated groundwater (1 ml) or inoculated soil (1 g) from the survival studies described below. The mixture was incubated at 37°C with continuous shaking at 200 rpm for 30 min. After this activation step, luminescence was measured from 1-ml undiluted aliquots of the mixture as described above. When potential luminescence was measured from soil, aliquots of the TSB-sample mixture (1.5 ml) were first centrifuged at 4,000 x g for 5 s, and 1 ml of supernatant was used for luminescence measurements. Cell numbers were quantified with the remainder of the TSB-sample mixture.
Potential luminescence as an indicator of potentially active population size of E. coli O157:H7 in soil.
To investigate potential luminescence as an indicator of the size of potentially active E. coli O157:H7 populations, stationary-phase (15-h) cultures (washed and resuspended in one-quarter-strength Ringer's solution) of chromosomally lux-marked E. coli O157:H7 were subjected to 10-fold dilutions in one-quarter-strength Ringer's solution. Aliquots (1 ml) of this dilution series were used for the potential luminescence assay described above. To investigate the response in soil, 0.8 ml of the dilution series was added to 10 g (fresh weight) of Insch soil (n = 3) to achieve a soil matric potential of -100 kPa, and the potential luminescence assay was performed with the inoculated soil. The response of the potential luminescence to starved populations of E. coli O157:H7 was also tested by incubating the washed stationary-phase culture for up to 15 days at 15°C. The potential luminescence assay was performed with and without the inclusion of nalidixic acid (10 µg ml-1) in order to investigate whether growth could take place during the course of the assay. The remainder of the dilution series was used for estimation of cell numbers on SMAC and TSA.
Validation of substitute strain for survival studies in natural water samples.
The survival responses of the wild-type and the lux-marked construct were also compared in sterile artificial groundwater. Both strains were grown to late exponential phase in TSB, washed twice with 1 volume of sterile artificial groundwater (Table 1), and incubated at 15°C in the dark for 70 days. Viable cell numbers were established at set time points by plate counts on SMAC and TSA following dilution in one-quarter-strength Ringer's solution. Potential luminescence of the chromosomally lux-marked strain was measured as described above.
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TABLE 1. Composition of groundwatera
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Statistical analysis.
One-way analysis of variance (with Excel 97) was performed to compare differences in specific growth rates between the wild-type and chromosomally lux-marked E. coli O157:H7. One-way analysis of variance was also performed to test differences in survival rates in the soil and water survival experiments at each time point. Differences were considered significant at the P
0.05 level.
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FIG. 1. Mutagenesis of wild-type strain (lanes 1 and 2) with the chromosomal insertion of a lux cassette did not interrupt the products for the H7 (band 1), intimin (band 2), or O157 (band 3) markers in the lux-marked mutant (lanes 3 and 4). Lanes M, Bioline Hyperladder I molecular size markers.
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FIG. 2. (A) Potential luminescence response of a dilution series of a pure culture of chromosomally lux-marked E. coli O157:H7 in one-quarter-strength Ringer's solution ( ) and when inoculated into Insch soil ( ); (B) their corresponding potential luminescence values per cell. Data represent the mean of three replicates ± standard deviation.
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FIG. 3. Survival of chromosomally lux-marked strain to starvation in one-quarter-strength Ringer's solution for 15 days, as assessed by culturable cell counts ( ) and potential luminescence (pRLU) per cell ( ). Data represent the mean of three replicates ± standard deviation.
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FIG. 4. (A) Survival of wild-type ( ) and chromosomally lux-marked ( ) E. coli O157:H7 in artificial groundwater at 15°C. (B) The potential luminescence (pRLU) of the lux-marked strain ( ) dropped at an equivalent rate to the cell numbers, as seen from the potential luminescence per cell ( ) response. Only data until day 45 are shown, as potential luminescence values dropped below the detection level after this time point. Data represent the mean of three replicates ± standard deviation.
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FIG. 5. Survival of wild-type ( ) and chromosomally lux-marked ( ) E. coli O157:H7 in Insch soil at 15°C and matric potentials of -5 kPa, -100 kPa, and -1,500 kPa. Data represent the mean of three replicates ± standard deviation.
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TABLE 2. Recovery of E. coli strains from spiked Insch soil at 15°C and different matric potentialsa
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FIG. 6. Corresponding values (to the cell numbers in Fig. 5) of potential luminescence ( ) and luminescence per cell ( ) in microcosms of Insch soil at 15°C and matric potentials of -5, -100, and -1,500 kPa, spiked with a culture of chromosomally lux-marked E. coli O157:H7. Data shown are for the first 35 days, as potential luminescence dropped below the detection limit after this time point. Data represent the mean of three replicates ± standard deviation.
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Use of a lux-marked E. coli O157:H7 to monitor adherence to food has been reported previously (36). The use of this construct enabled real-time visualization of plasmid-marked E. coli O157:H7 adherence to animal carcass tissue and clearly highlighted the potential values of a lux marker system in E. coli O157:H7 survival studies. Due to potentially high copy numbers, plasmid lux-marked constructs may exhibit higher luminescence than chromosomally lux-marked constructs (1). The disadvantage of such constructs, however, is that a selective pressure (such as addition of antibiotics) must be applied to maintain the plasmid. Such constructs are, therefore, only suitable for short-term studies where plasmid loss is unlikely to occur. In contrast, use of stable chromosomally lux-marked constructs, such as that reported in this study, eliminates the requirement of applying a selective pressure and is thus desirable for long-term survival experiments. Although the construction of a chromosomally lux-marked E. coli O157:H7 strain has been reported previously (41), this was a luxAB mutant, which is dependent on addition of n-decanol for display of the luminescent phenotype. The construct described in this study alleviates this need for additions prior to analysis.
Although there was a slight difference in growth rate between the chromosomally lux-marked and the wild-type E. coli O157:H7 strain at 37°C, this difference was not noted in the long-term survival experiments. In experiments with soil and artificial groundwater, there was no difference in survival behavior between the wild-type and chromosomally lux-marked strain. These findings support the validity of the construct as a substitute for the wild-type strain for long-term experiments. In addition, the observed survival rates correspond well with published data of survival of toxigenic O157:H7 strains in similar environmental samples (14, 24, 29, 42). Although the experiments presented here have been conducted in essentially sterile environments in order to provide preliminary validation for the use of this lux-marked construct, recent findings also suggested the validity of application in nonsterile environmental samples (2).
The data obtained here suggest that contrasting matric potentials did not influence the survival of E. coli O157:H7 in Insch soil. Although matric potential is thought to affect bacterial movement below -20 kPa and, similarly, decrease bacterial activity below -50 kPa (44), no difference in survival of E. coli O157:H7 at matric potentials between field capacity (-5 kPa) and wilting point (-1,500 kPa) was noted. Similar observations were made by Meikle et al. (25) and Turnbull et al. (38) when survival of Pseudomonas fluorescens in soil was studied. In the study by Meikle et al. (25), some indication that increased matric stress reduces bacterial survival was found, but, as in this study, these indications were not confirmed by statistical differences. Although survival of E. coli O157:H7 may be similar in soil at most realistic matric potentials, the differences in matric potential will most certainly have an effect on the localization of bacteria within the soil in the event of a sudden rainfall. In the drier soils, the cells will be translocated into the smaller pores within the soil matrix (32), which will limit their potential transport by leaching. Thus, although there may be an equal risk of infection by direct ingestion of soils of different matric potentials, the infection risk through leaching should be investigated further.
Potential luminescence of lux-marked E. coli O157:H7 introduced into artificial groundwater and soil was used to assess the viability and metabolic activity of the strain in situ. Although the cell densities needed for adequate detection of potential luminescence may appear high for environmental samples, such cell densities have been shown to occur in fecal material of actively shedding cattle (45) and may thus be within a similar range in top layers of soil and/or soil leachates. In both the artificial groundwater and the soil survival experiments, final values of potential luminescence per cell were similar, irrespective of the incubation time of the chromosomally lux-marked E. coli O157:H7 populations in soil. This suggested that E. coli O157:H7 populations were capable of reactivation to similar metabolic levels as when they had been introduced into soil or water.
Despite the possibility of experiencing starvation conditions, our results suggest there was no noticeable effect of starvation or matric stress on the potential metabolic activity of the cells. These findings may bear important considerations with regard to ingestion of environmental material contaminated with E. coli O157:H7. The capacity for an ingested starved E. coli O157:H7 population to reactivate may have implications regarding expression of virulence factors (e.g., intimin binding gene, Shiga toxin genes) which may influence the likelihood or severity of infection.
Currently, there are no data that document the effects of starvation in soil on the virulence traits of E. coli O157:H7. Starvation of E. coli O157:H7 in water has, however, been shown to influence the expression of the O157 antigen (12) and the development of a chlorine-resistant phenotype (20). Other studies also point to the importance of the physiological condition of E. coli O157:H7 with regard to the expression of cellular adhesion factors (13). The potential luminescence assay described here does not rely on cultivation of cells and requires only an activation step and could therefore be used for the fast quantification of nonoptimal metabolism of starved cells to further investigate the likelihood of infection arising from E. coli O157:H7 in environmental material. In addition, although not observed within the experimental framework of this validation study, trends of potential luminescence over the course of survival studies could be also potentially be used to quantify metabolic states such as sublethal injury and the viable but nonculturable response.
In this study, we successfully engineered a chromosomally lux-marked E. coli O157:H7 construct. With this construct, an assay was developed which enabled predictions of the size of potentially active populations of chromosomally lux-marked E. coli O157:H7 to be made without the limitations of the established detection methods. The in situ, metabolically linked nature of the luminescence-based assay, eliminated the requirement of cell extraction and provided the ability to discriminate viable populations of chromosomally lux-marked E. coli O157:H7 from nonviable cells. This assay provides estimates of chromosomally lux-marked E. coli O157:H7 relative population sizes within 30 min, which is advantageous over alternative, time-consuming techniques such as quantitative PCR and culture-based techniques. The attributes of this construct may thus provide a potentially useful tool for future studies of survival and transfer of E. coli O157:H7 in the environment.
Fiona Thomson-Carter (E. coli Reference Laboratory, University of Aberdeen) and David Fenlon (Scottish Agricultural College, Veterinary Science Division, Aberdeen, United Kingdom) are gratefully acknowledged for providing strains and cattle slurry, respectively. We thank Hedda Weitz, University of Aberdeen, for valuable comments on the manuscript.
Present address: Division of Geographic Medicine and Infectious Diseases, New England Medical Center, Boston, MA 02111. ![]()
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