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Applied and Environmental Microbiology, June 2003, p. 3393-3398, Vol. 69, No. 6
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.6.3393-3398.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Laboratory of Parasitology,1 Laboratory of Environmental Hygiene, Istituto Superiore di Sanità, 00161 Rome, Italy2
Received 4 December 2002/ Accepted 12 March 2003
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The importance of microbiological and parasitological criteria for controlling the contamination of recycled water has been repeatedly emphasized. In industrialized countries, the most common human parasitic protozoa transmitted by water belong to the genera Giardia and Cryptosporidium (34). Giardiasis and cryptosporidiosis are also common infections of domestic and wild animals, which shed a large number of cysts and oocysts in the environment. These cysts are insensitive to disinfectants at the concentration commonly used in water treatment plants to reduce bacterial contamination, although it has been shown that at higher concentrations of chlorine and ozone, Giardia cysts are less resistant than Cryptosporidium oocysts (35). Moreover, Giardia cysts have been shown to survive in water for up to 2 months at temperatures as low as 8°C (26), and Cryptosporidium oocysts can survive for up to 1 year at 4°C in artificial seawater (36). Furthermore, the infectious dose has been estimated to be as low as 10 cysts for Giardia (1) and 30 oocysts for Cryptosporidium (12).
Numerous water-borne outbreaks of giardiasis and cryptosporidiosis have been documented in the past several decades, mainly in the United States, Europe, and Australia (33, 34). This has led the U.S. Environmental Protection Agency (EPA) to regulate the level of Giardia cysts and Cryptosporidium oocysts allowed in drinking water (40). To detect oocysts, many methods have been developed based on the filtration of large volumes of water, followed by centrifugation, clarification (either by density gradients or immunomagnetic separation), and microscopic screening of the sample after staining with monoclonal antibodies (28). Although these methods have proven to be very useful for determining whether or not waters are contaminated with parasites, they cannot distinguish among the different species or genotypes. To this end, PCR assays have been developed (33), yet the efficiency of amplification techniques is often reduced by the presence of inhibitory substances in water samples, such as humic and fulvic acids (37, 42).
In Italy, there are few published data on the prevalence of Giardia and Cryptosporidium in wastewaters. The objectives of the present study were to evaluate the prevalence of these parasites in four wastewater treatment plants, to estimate the efficiency of treatment plants in removing these parasites, to develop a reliable method for DNA extraction from concentrated water samples, and to determine the species and genotype of these parasites by means of a molecular assay.
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The specific steps in the treatment process used in each of the four plants are described in Table 1. The treatment carried out at plant 1 differed from that at the other three plants. Specifically, primary treatment did not include sedimentation, and secondary treatment consisted of oxidation with O2 and sedimentation, whereas in the other three plants it consisted of activated sludge and sedimentation. Furthermore, no disinfection was used in plant 1. In plant 1, since it was not physically possible to collect samples at the end of the primary treatment, the first sample of treated wastewater was collected shortly after the oxidation process had begun. In plant 4, samples were not collected after the primary treatment.
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TABLE 1. Main features of treatment plants and removal of Giardia cysts
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Giardia cysts were identified based on their size, shape, and the pattern and intensity of immunofluorescent assay staining (i.e., bright green fluorescence of the cyst wall). Cryptosporidium oocysts were identified based on their size, shape, and the presence of a suture on the oocyst wall at a magnification of 1,000x. The number of oocysts was counted for each sample in triplicate.
Statistical analysis.
To evaluate the removal efficiency of Giardia cysts at the four plants, the logarithm of the number of cysts in the influent and in the effluent before disinfection was evaluated to overcome the biases due to the variable number of cysts in the influent of the four plants and the fact that, independently of the efficiency of a plant, the higher the number of cysts in the influent, the larger the difference between the number of cysts in the influent and that in the effluent. The removal efficiency of plant 1 (i.e., that with an active oxidation with O2 and sedimentation) was compared with those of plants 2, 3, and 4, which used activated sludge and sedimentation, by analysis of variance, having specified the active oxidation with O2 and sedimentation as nested within the plant.
DNA extraction and PCR amplification.
DNA extraction was performed according to the method of Da Silva et al. (11). Briefly, 0.4 ml of concentrated wastewater was homogenized with the FP120 FastPrep cell disruptor (Q-Biogene, Carlsbad, Calif.). The DNA released from disrupted cysts was purified with the FastDNA kit (Q-Biogene, Carlsbad, Calif.), and stored at 4°C.
A 753-bp product from the ß-giardin gene of Giardia was amplified with the forward primer G7 (5'-AAGCCCGACGACCTCACCCGCAGTGC-3') and the reverse primer G759 (5'-GAGGCCGCCCTGGATCTTCGAGACGAC-3') (7). The variable region of the small-subunit rRNA gene of Cryptosporidium was amplified with the forward primer 5'-AAGCTCGTAGTTGGATTTCTG-3' and the reverse primer 5'-TAAGGTGCTGAAGGAGTAAGG-3' (17). The PCR mix consisted of 1x buffer containing 1.5 mM MgCl2, 200 µM deoxynucleoside triphosphate mix, 25 pmol of each primer, 1.25 U of AmpliTaq DNA polymerase (Applied Biosystems, Branchburg, N.J.), and 1 to 5 µl of purified DNA in a final volume of 50 µl. Negative and positive controls were included in each batch of experiments.
PCR was performed as follows: after an initial denaturation of 5 min at 94°C, a set of 35 to 40 cycles was run, each consisting of 30 s at 94°C, 30 s at 65°C, and 60 s at 72°C, followed by a final extension of 5 min at 72°C. PCR products were detected by agarose gel electrophoresis and visualized by ethidium bromide staining. The products were purified with the QiaQuick kit (Qiagen, Hilden, Germany).
Molecular identification of cysts by sequence analysis or PCR-restriction fragment length polymorphism analysis.
PCR products were sequenced with the ABI Prism BigDye terminator cycle sequencing kit (Applied Biosystems, Branchburg, N.J.) and a set of internal primers. Sequencing reactions were analyzed on an ABI 310 automatic DNA sequencer (Applied Biosystems, Branchburg, N.J.). Sequences were assembled with the program SeqMan II (DNAStar).
Nucleic acids were extracted from aliquots (0.4 ml) of concentrated influent samples collected at the four plants; each aliquot contained approximately 600 to 2,000 cysts. To identify Giardia cysts, aliquots of ß-giardin PCR products were digested for 4 h at 37°C with 10 U of HaeIII (New England BioLabs, Beverly, Mass.) in a final volume of 20 µl. The predicted restriction patterns were fragments of 202, 201, 150, 126, and 74 bp for assemblage A, and fragments of 202, 176, 150, 117, 84, and 24 bp for assemblage B. Restriction fragments were separated by electrophoresis on a 3% Metaphor gel (FMC, Rockland, Maine) and visualized after ethidium bromide staining.
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FIG. 1. Number of Giardia cysts per liter in wastewater samples collected at different steps in the treatment process at treatment plants in Bergamo (plant 1), Naples (plant 2), Cagliari (plant 3), and Palermo (plant 4) in the spring, summer, autumn, and winter of the year 2000. Solid bars, influent samples; thick striped bars, samples after primary treatment; gray bars, samples after secondary treatment; white bars, effluent samples. In plant 1, the thin striped bars show the number of Giardia cysts shortly after oxidation with O2 had begun, and the white bars show the number of Giardia cysts after oxidation with O2 and sedimentation was completed. In plant 4, no samples were collected after primary treatment.
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In plants 2 and 3, the removal efficiency of the secondary treatment (i.e., activated sludge and sedimentation) was 43.9 and 61.0%, respectively. In a single sample collected during the winter at plant 2, an increase of 4% in the number of cysts was observed (Fig. 1). The removal efficiency of the disinfection process, which was carried out at plants 2, 3, and 4, was 53.2, 70.8, and 87.0%, respectively (Fig. 1).
The overall removal efficiency of Giardia cysts was 94.5, 87.0, 96.0, and 98.4% in plants 1, 2, 3, and 4, respectively (Fig. 1). The removal efficiency when comparing untreated wastewater samples to those after secondary treatment was 94.5, 72.1, 86.4, and 88.0% for plants 1, 2, 3, and 4, respectively. At plant 1, the secondary treatment consisted of active oxidation with O2 and sedimentation (i.e., the final treatment), because a disinfection process was not applied at this plant. This treatment resulted in a higher removal efficiency in comparison to that observed in the other three plants, and the difference was significant (P = 0.05, analysis of variance).
Molecular identification of parasites.
PCR amplification of the 753-bp fragment of the ß-giardin gene was performed on these templates, and products of the expected size were obtained with 1 to 2 µl of template, which corresponds to 10 to 50 cysts (Fig. 2). At least one PCR product from each plant was sequenced (Table 2), whereas all 16 influent samples were analyzed with a PCR-restriction fragment length polymorphism assay (Fig. 3).
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FIG. 2. Electrophoretic separation of ß-giardin amplification products from wastewater samples. Lanes 1 to 3, influent samples from the plant 1; lanes 4 to 6, influent samples from plant 2; lane M, 100-bp molecular ladder; lanes 7 to 9, influent samples from plant 3; lanes 10 and 11, influent samples from plant 4; lane 12, negative control; lane 13, positive control.
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TABLE 2. Genetic typing of Giardia cysts detected in four wastewater treatment plants in Italy
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FIG. 3. Electrophoretic separation of ß-giardin PCR products after restriction with the endonuclease HaeIII. Lanes M, 50-bp molecular ladder; lane 1, positive control for assemblage A; lane 2, positive control for assemblage B; lanes 3 to 6, samples of influent from plant 1; lanes 7 to 10, samples of influent from plant 2; lanes 11 to 14, samples of influent from plant 3; lane 15 to 18, samples of influent from plant 4. For each plant, influent samples from spring, summer, autumn, and winter were typed and are shown in that order. Note the concomitant presence of restriction fragments specific for assemblages A and B in samples 3, 4, 5, 10, 11, 13, 16, and 18.
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Our investigation of the four plants revealed that Giardia cysts were ubiquitous, whereas Cryptosporidium oocysts were quite rare. Similar prevalence rates were reported in wastewater collected at a treatment plant in Bari, a city in southern Italy, where the number of Giardia cysts was 100-fold than the number of Cryptosporidium oocysts (5). Since the parasites detected in our study were probably of human origin, given that the wastewater was from cities and not from agricultural areas, these results suggest that the prevalence of cryptosporidiosis is lower than that of giardiasis; this is also supported by the results of surveys of intestinal parasites in Italy's general population (3, 10, 23). That the prevalence of cryptosporidiosis is relatively low in Italy compared to other countries is supported by the results of previous studies, in which the prevalence among persons with AIDS before the introduction of highly active antiretroviral therapy, which is considered to reflect the prevalence among the general population, was 1.9% (27), compared to 5 to 6% in the United States (9). A prevalence of 1.9% was also reported among immunocompetent children in Italy (4).
Although Giardia cysts were found in all of the wastewater samples in the four treatment plants throughout the year, the greatest number of cysts was found in the autumn and winter. Although a similar seasonal pattern has been reported by some authors (16, 41), it has not been confirmed by others (15, 30); thus, it is not clear whether or not seasonality is a general feature of Giardia contamination.
As shown in Fig. 1, an increase in Giardia cysts was observed three times during the purification process in the plants. As Giardia does not reproduce outside the host, this was probably due to the fact that the aggregated protozoa desegregated before sedimentation, thus increasing the concentration of free parasites in the sample, as also observed by other authors (6).
The overall removal efficiency ranged from 87.0 to 98.4% at the different plants, which is consistent with estimates from other treatment plants that use similar processes (8, 31). The highest removal efficiency was at plant 4 (98.4%), perhaps as a consequence of filtration, which was applied after the secondary treatment and before disinfection; although the filter had 60-µm pores and Giardia cysts measure 15 to 18 µm, aggregated cysts could have been trapped. However, the process of oxidation with O2 and sedimentation used at plant 1 resulted in greater cyst reduction than that obtained by the activated sludge and sedimentation methods used at the other three plants (P = 0.05, analysis of variance). To determine whether active oxidation with O2 is truly more effective than activated sludge in reducing the number of Giardia cysts, additional research will be needed. In fact, the present results may be biased by several factors, including the limited number of samples examined, the different volume of water treated in each plant (from 500 to 6,000 m3/hour), and the seasonality in the number of Giardia cysts.
Most studies on Giardia contamination of water have been limited to estimating the prevalence (15, 16, 22), and little information has been published on the specific contaminating species. However, this is of particular importance, since only Giardia duodenalis is associated with human infection (38), and only two of the seven G. duodenalis assemblages (i.e., assemblages A and B) have been found in humans (39). Therefore, the simple presence of Giardia cysts in the absence of data on the species or assemblage does not imply a risk of transmission to humans. Most studies have been conducted by spiking water samples with a known number of cysts, followed by evaluation of procedures for recovery and typing of the organism (32). In the few instances when nonspiked water samples were studied, the sensitivity and specificity of the PCR assays were low. In a study of drinking water samples performed after an outbreak of giardiasis in Canada, the direct typing of cysts by PCR amplification of the triose phosphate isomerase gene was unsuccessful, possibly because of the small number of cysts (25). In a study on sewage samples from Finland, nonspecific PCR amplifications were observed with primers targeting the glutamate dehydrogenase gene, and a further characterization of the Giardia cysts was not possible (29).
In our study, nucleic acids were efficiently extracted from concentrated wastewater samples with a method that had been developed for detecting protozoa present in fecal samples (7, 11). This method is rapid, in that it allows up to 12 samples to be simultaneously processed in about 1 h, and the DNA extracted is essentially free of inhibitors and can thus be efficiently amplified by PCR (Fig. 2). Moreover, we have shown that the ß-giardin PCR assay yields robust and specific amplification products and that it allows the rapid identification of genotypes by sequence analysis or restriction analysis (Fig. 3). The better performance of this assay is probably due to the amplification target chosen, since giardin proteins are considered unique to Giardia (13), and primers that do not cross-react with other organisms can be designed (24).
The results indicate that water processed at the four treatment plants could be a potential source of human infection with G. duodenalis, although the viability of the cysts was not investigated. In Italy, about 80% of drinking water is from ground water, and only 20% originates from surface water, which is more easily contaminated with parasitic protozoa. However, the release of contaminated effluents into the environment could increase the risk of human infection with these pathogens through the consumption of vegetables. Moreover, the results stress the importance of the microbiological control of effluents from wastewater treatment plants and the need for regulations that establish the acceptable concentrations of oocysts based on the use of wastewaters, i.e., if they should be recycled in the cities for public and/or in-house dual systems, for agricultural purposes, which could be limited to certain crops only, or for industry.
This study received financial support from research project 1156/RI, entitled "Infezioni Da Cryptosporidium e Giardia attraverso alimenti e acque: metodi di identificazione ed epidemiologia molecolare," of the Istituto Superiore di Sanità, Rome, Italy, and from research grant PR 28/IS of the Ministero dell'Ambiente of Italy.
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