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Applied and Environmental Microbiology, June 2003, p. 3469-3475, Vol. 69, No. 6
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.6.3469-3475.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Institute for Pharmaceutical Biology, University of Bonn, D-53115 Bonn,1 German Collection of Microorganisms and Cell Cultures (DSMZ) GmbH, D-38124 Braunschweig,2 Department of Microbiology, Technical University of Munich, D-80290 Munich, Germany3
Received 2 December 2002/ Accepted 20 March 2003
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Marine organisms may inhibit the colonization and establishment of biofilm-forming microbiota by producing antimicrobial metabolites and/or metabolites that interfere with microbial communication systems (7). The marine bryozoan Flustra foliacea (L.), which is abundant in various parts of the North Sea, has been shown to contain biologically active brominated alkaloids (3) and monoterpenes (5). Electron microscopic investigation of F. foliacea revealed no microbial settling on the distal part of the zooid, but bacterial cells were detected near the bottom of the operculum of the zooid. A distinct biofilm was established at the proximal end of the zooid and on older parts of a bryozoan colony (22). Previous studies with extracts of F. foliacea showed that animals from Canadian waters produce compounds with strong activity against Bacillus subtilis (a gram-positive bacterium), and the alkaloid fraction, containing mainly the brominated alkaloids compounds 8 and 10 (Fig. 1), exhibited activity mainly against gram-negative bacteria like Enterobacter cloacae, Escherichia coli, Klebsiella pneumoniae, Proteus vulgaris, Pseudomonas aeruginosa, Salmonella enterica serovar Typhimurium, and Serratia marcescens, as well as against the low-G+C-content gram-positive organisms Staphylococcus aureus and Staphylococcus epidermidis (17). An extract of F. foliacea from the North Sea, however, was described as being devoid of any such activity; only the isolated compound flustramine E (compound 12) was determined to be active against Botrytis cinerea and Rhizotonia solani (15).
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FIG. 1. Structures of secondary metabolites isolated from F. foliacea.
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Taxonomic identification of the bryozoan was performed by P. Haywood, School of Biological Sciences, University of Wales, Swansea, Wales. A museum sample has been retained at the Department for Pharmaceutical Biology, University of Bonn, Bonn, Germany.
Isolation and identification of bacteria from bryozoans.
Bacteria associated with F. foliacea and Bugula plumosa were isolated from the bryozoan samples as described by Pukall et al. (22). For isolation of cultivatable bacteria, bacterial suspensions were spread plated onto a variety of complex and minimal agar media supplemented with different compounds as energy sources (22). In this manner, different F. foliacea samples which were obtained from different sampling sites and at different times in the North Sea (west side of Helgoland, Steingrund) and, in addition, one sample of B. plumosa taken from the south pier at the harbor entrance of Helgoland were investigated. Analysis of the amplified ribosomal DNA restriction polymorphism was used to sort and generate different clusters of the bacterial strains isolated. In order to affiliate the amplified ribosomal DNA restriction polymorphism clusters with taxonomic units, representatives were characterized by analysis of the first 350 nucleotides of the 16S rRNA gene. A detailed analysis of strains was described by Pukall et al. (22).
Agar diffusion assays.
Agar diffusion assays were carried out at room temperature by using the methods of Schulz et al. (24). The following marine strains, representing members of different phylogenetic taxa, were used as test organisms for the agar diffusion assay: strain MBT3 (Paenibacillus pabuli; a low-G+C-content gram-positive strain), MBT21 (Roseobacter sp.; a member of the
subclass of the class Proteobacteria), SFLA51 (Sulfitobacter sp.; a member of the
subclass of the Proteobacteria), OI-14-4 (Psychroserpens-like bacterium; a member of the Cytophaga-Flexibacter-Bacteroides phylum), and A011 (Halomonas marina; a member of the
subclass of the Proteobacteria). Strains whose designations begin with MBT-, SFLA-, and OI- were originally isolated from Flustra colonies sampled in February 2000 (Steingrund), April 1999 (Steingrund), and April 1998 (west side of Helgoland), respectively. Additionally, the test organisms Bacillus megaterium DSM 32T (a gram-positive strain) and Escherichia coli DSM 498 (a gram-negative strain) were used.
Sample solutions each contained 1 mg of a test sample per ml. One hundred microliters of each solution was pipetted onto a sterile antibiotic filter disk (diameter, 10 mm; Schleicher & Schuell), which after evaporation of the solvent was placed onto the appropriate agar medium and sprayed with a suspension of the test organism. For marine-derived bacteria Bacto Marine Agar 2216 (Difco) was used. The appropriate agar medium for E. coli and B. megaterium has been described previously (24). An inhibition zone that was
2 mm in diameter (measured from the edge of the filter disk) was considered a positive result.
Inhibition of AHL sensor strains.
Quorum-sensing inhibition of compounds 1 to 11 was investigated by using the following sensor strains: Pseudomonas putida harboring the sensor plasmid pKR-C12 (25); P. putida harboring the sensor plasmid pAS-C8 (25); and E. coli MT102 harboring the sensor plasmid pSB403 (26). The sensor strains were grown overnight in Luria-Bertani (LB) medium (2) at 30°C, diluted fourfold in fresh medium, and grown for another hour. After addition of the appropriate signal molecule (50 nM N-3-oxododecanoyl-L-homoserine lactone for pKR-C12; 50 nM N-octanoyl-L-homoserine lactone for pAS-C8; 100 nM N-oxohexanoyl-L-homoserine lactone for pSB403), 100-µl aliquots of cultures were pipetted into the wells of microtiter plates (FluoroNunc, Polysorp). F. foliacea compounds were dissolved in dimethyl sulfoxide (DMSO) (10 mg/ml) and added to the wells at final concentrations ranging from 300 ng/ml to 20 µg/ml. After this, the microtiter plates were incubated at 30°C for 4 h. Fluorescent or bioluminescent signals were measured with a Lambda Fluoro 320 Plus reader (Bio-Tek Instruments). Inhibitor-mediated reduction of the reporter strain signal was correlated to the value obtained when the compounds were not added.
Growth experiment.
To eliminate the possibility that the inhibition of the quorum-sensing sensor strains was due to inhibition of bacterial growth, 30-ml LB medium cultures of E. coli were supplemented with two different concentrations (20 and 100 µg/ml) of compounds 8 and 10. As controls, growth experiments were also performed in media supplemented with the corresponding amounts of the solvent DMSO. The cultures were grown at 37°C with vigorous shaking. One-milliliter samples were retrieved at various times, and cell density was measured at 600 nm.
Measurement of protease activity.
P. aeruginosa wild-type strain PAO1 (14) and the AHL-negative lasI rhlI mutant strain PAO1-JP2 (19) were grown in 5 ml of LB medium in the absence and presence (20 µg/ml) of compounds 8 and 10 at 37°C for 16 h. Overnight cultures were harvested by centrifugation at 10,000 x g for 10 min, and the supernatants were sterile filtered. The proteolytic activity assay was performed as described elsewhere (23). Briefly, 50 µl of supernatant and 250 µl of 2% (wt/vol) azocasein (in 50 mM Tris-HCl, pH 7.5) were mixed and incubated at 37°C for 1 h. The reaction was stopped by addition of 1.25 ml of 10% (wt/vol) trichloroacetic acid, and the mixture was incubated for 20 min at room temperature and centrifuged. After addition of 750 µl of 1 M NaOH to 600 µl of the supernatant, the absorbance (optical density at 440 nm) was determined.
Extraction and isolation.
For extraction for GC-MS analysis, 1 g of frozen F. foliacea was extracted three times with 20 ml of dichloromethane. The volume of the resultant combined extracts was reduced to 1 ml, and the preparation was analyzed by GC-MS. For extraction and isolation of compounds 1 to 11, frozen F. foliacea (wet weight, ca. 5 kg) was extracted three times with 5 liters of dichloromethane. The extract (12 g of brown oil) was fractionated by vacuum liquid chromatography over normal-phase silica gel, and this yielded 13 fractions (20). Solid-phase extraction (SPE; Bakerbond SiOH) of fraction 13 with a step gradient from dichloromethane to methanol yielded 13 mg of compound 4. All other pure compounds were obtained by normal and reversed-phase HPLC, as described previously (20).
Analysis of natural products.
GC-MS results were obtained at 70 eV (1 scan/s at 180°C) by using a Perkin-Elmer AutoSystem XL attached to a Perkin-Elmer AutoMass detector and autosampler. In method 1, the following temperature gradient program was used: increase from 90°C (at zero time) to 160°C at a rate of 6°C/min and increase from 160 to 300°C at a rate of 10°C/min. The sample solution contained 1 mg/ml, the injection volume was 1 µl, and the split ratio was 1/5. In method 2, the temperature gradient program included an increase from 50°C (at zero time) to 230°C at a rate of 4°C/min, followed by an increase from 230 to 300°C at a rate of 10°C/min. The sample solution contained 1 mg/ml, the injection volume was 1 µl, and the split ratio was 1/5. GC separation was carried out by using a Perkin-Elmer PE-1 column (30 m by 0.32 mm) and He (2 ml/min) as the carrier gas. HPLC was carried out by using a Waters system consisting of a 600 pump controller, a 996 photodiode array detector, a 717 Plus autosampler, and an in-line degasser. Isolated natural products 1 to 11 were analyzed by using a Eurospher 100-C18 column (5 µm; 250 by 8 mm) and a eluent system consisting of water, methanol, and dichloromethane in a gradient from 15 to 0% water in 10 min, 85 to 40% methanol in 30 min, and 0 to 60% dichloromethane in 30 min; the flow rate was 2 ml/min. Organic solvents were purchased from Biesterfeld and distilled prior to use.
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FIG. 2. (A) GC-MS chromatogram showing separation of compounds 2 to 11 from the dichloromethane extract of F. foliacea. The GC parameters were as follows: an increase from 90°C (at time zero) to 160°C at a rate of 6°C/min and then an increase from 160 to 300°C at a rate of 10°C/min; sample concentration, 1 mg/ml; injection volume, 1 µl; split ratio, 1/5. (B) GC-MS chromatogram showing separation of compound 1 from the dichloromethane extract of F. foliacea. The GC parameters were as follows: an increase from 50°C (at zero time) to 230°C at a rate of 4°C/min and then an increase from 230 to 300°C at a rate of 10°C/min; sample concentration, 1 mg/ml; injection volume, 1 µl; split ratio, 1/5.
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TABLE 1. GC-MS and HPLC analyses of the secondary metabolites 1 to 11 found in F. foliacea
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Bacteria associated with F. foliacea and B. plumosa were isolated from the bryozoan samples as described by Pukall et al. (22). The cultivatable bacteria isolated from F. foliacea could be assigned to the
subclass of the Proteobacteria (Shewanella, Pseudoalteromonas), the
subclass of the Proteobacteria (Roseobacter, Sulfitobacter), the Cytophaga-Flexibacter-Bacteroides phylum (Flavobacterium, Psychroserpens-like bacterium), or the low-G+C-content gram-positive group (Bacillus). The cultivatable bacteria associated with B. plumosa consisted mainly of members of the
subclass of the Proteobacteria (Vibrio splendidus group, Halomonas marina, Shewanella sp., Pseudoalteromonas sp.).
The antibacterial effects of compounds 1 to 11 were investigated by using four bacterial strains representing different phylogenetic taxa which were obtained from F. foliacea (P. pabuli, Roseobacter sp., Sulfitobacter sp., Psychroserpens sp.) and H. marina obtained from B. plumosa. For comparative purposes terrestrially derived bacterial strains of B. megaterium and E. coli were included in the assays. The results of agar diffusion assays are shown in Table 2. All compounds inhibited the growth of at least two of the bacteria obtained directly from F. foliacea. Strong activity against Sulfitobacter sp. and Psychroserpens sp. was observed for the brominated alkaloid compound 1, the least abundant metabolite isolated from the dichloromethane extract of the bryozoan. The major components of the dichloromethane extract, compounds 3 and 4, inhibited the growth of all test organisms, and the most prominent activity was the activity against Sulfitobacter sp. Compound 6 showed strong activity against P. pabuli and Sulfitobacter sp. Addition of compound 11 resulted in considerable growth inhibition of Roseobacter sp. and Sulfitobacter sp. Interestingly, the growth of H. marina, derived from a different bryozoan species, was not inhibited by the F. foliacea compounds tested. Activities of compounds 1 to 11 against the nonmarine bacteria E. coli and B. megaterium were moderate (compounds 3 and 4), weak (compounds 1, 6, 10, and 11), or nonexistent (compounds 2, 5, 7, 8, and 9).
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TABLE 2. Antibacterial activities of F. foliacea compounds 1 to 11 in agar diffusion assays
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To analyze whether compounds 3, 6, and 8 to 10 were capable of antagonizing AHL-dependent quorum-sensing systems, decreasing concentrations of the substances were added to cultures of the different biosensors in the presence of the appropriate inducing AHL. In the case of AHL-inhibitory activity a reduction in expression of the reporter gene(s) (luxAB or gfp) was anticipated. In these assays two of the five compounds exhibited significant antagonistic effects. When the biosensors P. putida(pKR-C12) and E. coli(pSB403) were used, compound 8 caused more than 50% reduction in the signal intensities at a concentration of 20 µg/ml (Fig. 3A). In the case of the sensor P. putida(pAS-C8) the fluorescence signal was reduced by 30%. Similar but less pronounced effects were also observed with compound 10; the signal intensities were reduced by 50% for E. coli(pSB403) and by 20% for P. putida(pKR-C12), and for P. putida(pAS-C8) when the compound was added at a concentration of 20 µg/ml.
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FIG. 3. Interference of F. foliacea compounds 8 and 10 with AHL-dependent cell-cell communication. (A) Responses of different quorum-sensing reporter strains to the signal molecules and compounds 8 (C8) and 10 (C10). pKR-C12, P. putida harboring pKR-C12; pAS-C8, P. putida harboring pAS-C8; pSB403, E. coli harboring pSB403. The reporter strain signals (fluorescence and bioluminescence) in the absence of the compounds were defined as 100%. (B) Effects of compounds 8 and 10 on the growth of E. coli. The cultures were grown in the presence (20 or 100 µg/ml) or absence of compounds 8 and 10. Control cultures were supplemented with appropriate volumes of DMSO. OD600nm, optical density at 600 nm. (C) Effects of compounds 8 and 10 on expression of QS-regulated exoproteases of P. aeruginosa PAO1. Cultures of PAO1 were grown in the absence or presence of 20 µg of compound 8 or 10 per ml. P. aeruginosa lasI rhlI mutant PAO1-JP2, an AHL-deficient mutant, was used as a negative control. The protease activities of spent culture supernatants were determined with azocasein as the substrate. The data are means of three independent experiments. The proteolytic activity of PAO1 in the absence of the compounds was defined as 100%. The error bars indicate the standard errors of the means.
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To further analyze the AHL-antagonistic activity of compounds 8 and 10, their effects on the production of extracellular proteases in P. aeruginosa, a phenotype that is under stringent control of the AHL-dependent quorum-sensing systems operating in this organism (18, 23), were investigated. To do this, P. aeruginosa PAO1 was grown in the absence and presence of compounds 8 and 10. As shown in Fig. 3C, addition of 20 µg of compound 8 per ml resulted in a 50% reduction in protease activity, and compound 10 had only marginal effects at the same concentration. Importantly, growth of P. aeruginosa PAO1 was not affected by the presence of the test compounds at a concentration of 20 µg/ml. These results strengthen the view that the two F. foliacea compounds specifically inhibit AHL-mediated cell-cell communication.
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Most sessile invertebrates, such as marine bryozoans, are extremely vulnerable to biofouling and predation by grazers. In attempts to combat these attacks species have developed an array of physical and/or chemical defenses that can act separately or in combination against such risk organisms. F. foliacea has essentially weak physical defenses against predator and/or fouling organisms. To grow indeterminantly with new increments added during each growing season and to survive for up to 12 years, F. foliacea may have developed chemical defense strategies. Dyrynda found that extracts of F. foliacea have toxic effects on larvae of various other modular invertebrates (e.g., other bryozoans), fish, and bacteria (8). Carté and Faulkner observed similar effects for tambjamines A to D isolated from the bryozoan Sessibugula translucens and also proposed that these secondary metabolites may be implicated in defense of the bryozoan, acting against grazers and bacteria (6).
In this context the strong activities (Table 2) of compounds 1, 3, 4, 6, and 11 against one or more bacteria assigned to the
subclass of the Proteobacteria, the Cytophaga-Flexibacter-Bacteroides phylum, and the low-G+C-content gram-positive bacteria obtained directly from F. foliacea suggests that they are ecologically important for the bryozoan; i.e., compounds 1, 3, 4, 6, and 11 may be implicated in the control of bacterial growth on the surface of this bryozoan. GC-MS analysis of seawater surrounding F. foliacea showed that alkaloids are released from the colonies (unpublished results). In contrast to the pronounced activity of Flustra metabolites against bacteria associated with the organism itself, the activities against ecologically unrelated bacteria (E. coli, B. megaterium) and H. marina obtained from a different bryozoan species are negligible. The growth-inhibiting activities of Flustra metabolites against the various bacteria obtained from F. foliacea are different (Table 2). This probably reflects the different ecological roles of individual compounds.
The biocidal activities of compounds 8 and 10 against bacteria, previously observed indirectly by Laycock et al. (17) during an investigation of alkaloid fractions from F. foliacea containing mainly compounds 8 and 10, are weak (Table 2 and Fig. 3B). These compounds, however, influence AHL-based quorum sensing and thus may affect bacteria associated with F. foliacea through an additional mechanism. The red alga Delisea pulchra is known to elaborate a range of metabolites known as halogenated furanones (6, 16). These compounds exhibit a broad range of biological activities, including feeding deterrence of herbivores, inhibition of settlement of fouling organisms, and interference with bacterial signal-mediated regulatory systems (7).
Previous work has shown that furanones from D. pulchra have the ability to specifically interfere with AHL-regulated processes (12, 13). Similar to the effect of the F. foliacea metabolites compounds 8 and 10, the AHL-antagonistic effect of the furanones is limited to a certain concentration range. At higher concentrations the compounds from both organisms often have biocidal effects.
Compounds 8 and 10 may serve as lead structures for the design of specific AHL blockers. In many pathogenic bacteria expression of virulence factors is not constitutive but is regulated in a cell density-dependent manner by quorum-sensing systems. This form of gene regulation ensures that the pathogen remains invisible to the immune system of the host until the opportunistic pathogen has reached a critical population density sufficient to overwhelm the host's defenses and to establish an infection. Thus, quorum-sensing systems represent highly attractive targets for the development of novel therapeutic strategies. The major advantage of this approach to drug development is that expression of pathogenic traits is specifically blocked while growth of the bacteria is unaffected. As attenuation of the pathogen does not impose any selective pressure on the cells, it can be anticipated that resistant mutants will not arise. The finding that the F. foliacea metabolite compound 8 is capable of suppressing the AHL-dependent production of proteolytic activity in P. aeruginosa, a major virulence factor of this opportunistic pathogen, is a promising starting point for the development of a novel anti-infective agent.
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