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Applied and Environmental Microbiology, July 2003, p. 4057-4066, Vol. 69, No. 7
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.7.4057-4066.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352
Received 28 May 2002/ Accepted 14 April 2003
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Living organisms have developed a variety of defenses against Al. These include the absence of active transport processes for trivalent ions (41); the induction of oxalate production to complex the Al extracellularly, thereby preventing its uptake (7, 14, 18), or intracellularly to prevent reaction with other cellular components (10, 11); the storage of organically complexed Al in cell vacuoles (2); the generation of extracellular alkalinity to precipitate Al(OH)3 (16, 27); and the development of enhanced divalent-cation uptake mechanisms (1, 21, 47).
Despite the general agreement that Al toxicity derives from its replacement of divalent metal complexes, chiefly Mg and Ca, in cells or cell membranes, there is less agreement about whether the effect is generic to all forms of soluble Al. Stable organic complexes of Al (e.g., oxalate or citrate) seem to mitigate the toxic effects on methanotroph activity (25) and root growth (13). However, citrate complexes also seem to be the mechanism by which soluble Al crosses the blood-brain barrier (46). With respect to inorganic forms of Al, most studies suggest that monomeric Al3+ is the actively toxic species, even though toxicity seems to peak in the slightly acidic to neutral region (pH 5 to 6.5) rather than at lower pHs, where Al3+ dominates (e.g., see reference 6). This apparent conflict is often explained in terms of increased H+ competition with Al3+ at the lower pHs preventing Al from contacting cell membranes and thus overriding the Al toxicity effect. Parker et al. (30, 31), however, showed that a metastable polymeric form of soluble Al that forms by mixing of acidic and basic waters [Al13O4(OH)24(H2O)127+] was significantly more toxic to wheat roots than an equivalent concentration of monomeric Al3+. The mode of the polymer-induced toxicity remains unclear, although it could be simply a means of delivering a large quantity of Al directly to the membrane surface, thus overwhelming the normal defenses.
Among the microorganisms, acid-tolerant yeasts and fungi seem to have the highest resistance to Al (15, 16, 27), but soil bacteria, notably Pseudomonas spp., can be Al tolerant (2, 10, 11, 19). To our knowledge, no studies of the Al tolerance of the sulfate-reducing bacteria (SRB) have been performed. Our interest in this topic stems from preliminary work (41a; J. E. Amonette, unpublished data; J. M. Suflita, D. Wong, and L. R. Krumholz, DOE-NABIR PI Workshop, abstr. LBNL-47386, p. 54, 2001) suggesting that the Al content of minerals may be one of the factors influencing the distribution of SRB in sediments. In particular, this work showed that clay minerals containing Al inhibited SRB growth whereas those with little or no Al in their structure had correspondingly little impact on SRB growth. To further investigate this phenomenon, we conducted a batch incubation experiment to assess the possible toxic effects of soluble and freshly precipitated Al on Desulfovibrio desulfuricans G20, a strain of SRB. As the soluble form of the Al changes with pH (it is predominantly cationic at pHs of <6 and anionic at pHs of >7.5, with a charge-neutral species dominating at intermediate pHs) we examined a range of pH conditions and soluble-Al concentrations.
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The growth medium contained no citrate, phosphate, ascorbic acid, iron, or thioglycolate and lesser quantities of lactate (4.8 g liter-1), sulfate (1.9 g liter-1), magnesium (0.1 g liter-1), and yeast extract (50 mg liter-1) than the standard Postgate lactate C medium. New components of the growth medium included Tryptone (0.5 g liter-1) and PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid); 10.9 g liter-1] as a nonreactive buffer. Although not required for this study, the expression of the plasmid was maintained by addition of chloramphenicol (35) to the growth medium. The cell cultures were maintained at pH 7.2. Inocula were prepared in growth medium that did not contain chloramphenicol.
The experimental media were similar to the growth medium but lacked chloramphenicol and were buffered at the experimental pH with either 4-morpholineethanesulfonic acid monohydrate (MES) or 1,3-bis[tris(hydroxymethyl)methylamino]propane (BTP) in place of PIPES. After the dry ingredients were dissolved in H2O, the media were allowed to age overnight, sparged with nitrogen, and brought into an anoxic chamber, where they were adjusted to the desired pH with HCl or NaOH and distributed among the serum bottles prior to autoclaving.
Experimental design and procedure.
The experimental design was a simple factorial involving four initial pHs (5.0, 6.5, 7.2, and 8.3) and five levels of added Al (0, 0.01, 0.1, 1.0, and 10 mM), for a total of 20 treatment combinations. Each treatment combination receiving inoculum was replicated three times. A set of 20 uninoculated treatment combinations was also run as an abiotic control.
Experiments were conducted with serum bottles (Wheaton Science Products, Millville, N.J.) containing 30 ml of medium having the appropriate buffer (MES for pH 5.0 and BTP for pHs 6.5, 7.2, and 8.3) and level of Al (added as AlCl3 · 6H2O powder to the buffer medium). After addition of the experimental medium, the bottles were sealed, autoclaved, and allowed to cool. To start the experiment, 1 ml of 4- to 5-day-old inoculum (late log growth stage, 1.5 x 109 to 2.1 x 109 cells/ml) was injected through the septum with a syringe. The bottles were shaken to mix the contents thoroughly, removed from the anoxic chamber, and incubated while stationary and at room temperature (22°C) for the remainder of the experiment.
Periodically during the experiment (1, 4, 7, 14, 28, and 56 days after inoculation), small aliquots (ca. 50 µl) were taken from the serum bottles and visual counting of active bacteria was done with an optical microscope and a hemacytometer (Hausser Scientific, Horsham, Pa.). In addition to total active-cell counting, estimates of the proportion of active cells having different morphologies (e.g., vibrio versus spirilloid) were also made.
At the end of the experiment (56 days), solutions from two replicates were analyzed for selected chemical properties. Serum bottles were opened inside an anoxic chamber, and an 8-ml aliquot was analyzed immediately for soluble sulfide by a methylene blue-based colorimetric procedure available in kit form (Chemetrics, Inc., Calverton, Va.). A separate 3-ml aliquot was analyzed first for pH (Orion Ross combination electrode) and then Eh (Orion Pt electrode standardized with quinhydrone-amended pH buffers).
A third aliquot was analyzed for soluble Al and Mg after filtration (Amicon Centriplus YM-30 membrane [30,000 molecular weight cutoff, 3.6-nm nominal pore size], Millipore Corporation). Filter membranes were first soaked in deionized H2O, followed by 2% HNO3, and then centrifuged and washed thrice with deionized H2O and once with a few milliliters of the sample solution from the serum bottle. All of these supernatant solutions were discarded, and then a fresh 10 ml of sample solution was passed through the membrane. This supernatant was acidified to pH 2 with 2% HNO3 and stored in acid-washed plastic vials at 4°C until analysis by inductively coupled plasma mass spectrometry.
A 27Al nuclear magnetic resonance (NMR) spectrum was collected with a CMX Infinity spectrometer operating at 130.246 MHz. The sample (4 ml) was analyzed at room temperature in an 8-mm-diameter tetrafluoroethylene NMR tube. Chemical shifts were referenced to the resonance of 10 mM AlCl3 in 10 mM HCl or in 40 mM NaOH. The delay between scans was 0.5 s, and the radio frequency pulse width was 2.5 µs. A single scan was collected for the standards, and 128,000 scans were obtained for the experimental sample. All spectra were phase corrected.
X-ray diffraction patterns were collected for solid phases present in selected samples at the end of the experiment. Specimens were prepared as smear mounts on zero-background (i.e., off-axis single-crystal) quartz slides, and patterns were collected for both the wet and air-dried states. Diffraction data were collected with Cu-K
radiation with a Philips X'pert MPD (PW 3040/00 type) system equipped with a curved-graphite monochromator.
Thermodynamic calculations.
Solution concentration data were speciated with the MINTEQA2 code, version 3.11 (40). The original database was augmented with values for several species and solids as listed in Table 1. Calculations were performed for the initial composition of the solution (with and without SO42- included) across a pH range of 4 to 9 to determine the solubility boundaries for Al. A second set of calculations was performed for the final solution composition. For these calculations, the concentrations of acetate and carbonate species were estimated from the measured sulfide concentrations on the basis of the following reaction stoichiometry (38):
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TABLE 1. Additional thermodynamic data used in MINTEQA2 calculations
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TABLE 2. Motile-cell counts obtained with a hemacytometer
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FIG. 1. Changes in motile-cell population densities in response to total-Al levels ranging from 0 to 10 mM at initial pHs of 6.5 (a) and 8.3 (b). d, days.
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FIG. 2. Changes in motile-cell population densities in response to initial pH levels ranging from 5 to 8.3 at total-Al levels of 1 (a) and 10 (b) mM. d, days.
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TABLE 3. Chemical properties of solutions at end of experimenta
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Soluble-Al concentrations ranged from those expected on the basis of complete dissolution of the amount added to as low as the analytical detection limit of 1.9 x 10-6 M (Table 3). In general, only the pH 5 treatments and the sterile controls at 0.01 mM Al yielded dissolved-Al concentrations comparable to the added Al concentrations. At pHs of >5, some degree of Al precipitation occurred, and the degree of precipitation was correlated with the pH. For example, at pH 8.3 with 10 mM total Al added, the soluble-Al concentration in the inoculated sample at the end of the experiment was below the limit of detection. Also, at pHs of ≥6.5, the soluble-Al concentrations in the inoculated treatments were consistently less than those in the corresponding sterile control.
Cell morphology.
As noted by Postgate (33, 34), Desulfovibrio spp. change morphology in response to environmental conditions. In this experiment, we observed two morphologies, vibrio (i.e., slightly curved rod) and spirilloid (Fig. 3). In general, the vibrio form dominated. The spirilloid form, however, was increasingly seen under higher-pH conditions and was the dominant morphology in the pH 8.3, 10 mM Al treatment during a major portion of the experiment (Fig. 4). At pH 8.3 during the first 28 days, the fraction of spirilloid bacteria generally increased with the total Al concentration (Fig. 4, right).
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FIG. 3. Photomicrographs of acridine orange-stained D. desulfuricans G20 showing predominantly vibrio morphology (a) and spirilloid morphology (b).
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FIG. 4. Proportions of bacterial cells exhibiting spirilloid morphology in response to total-Al levels ranging from 0 to 10 mM at initial pHs of 6.5 (a) and 8.3 (b). d, days.
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Toxicity of soluble Al.
Examination of the mean motile-cell counts for the pH 5 treatments (Table 2) shows only slight evidence of Al toxicity. The overwhelming effect in these five treatments is that of a low pH, a result not unexpected from the reported pH tolerance range of SRB (i.e., from pHs of <5 to 9.5 [reference 33, p. 87]). Consequently, these treatments will be ignored for the remainder of the discussion of Al toxicity.
At the higher pHs, comparison of the cell population density, soluble-sulfide, and Pt electrode data with the soluble-Al data suggest that the threshold concentration for soluble-Al toxicity is near 5 x 10-5 M Al. When soluble-Al concentrations exceed this level, the cell population density and sulfide concentration decrease significantly (Fig. 5, top) and the Pt electrode potential increases (Fig. 5, bottom). At soluble-Al concentrations below the toxicity threshold, the sulfide and Pt electrode data are generally stable. However, the motile-cell population density data diverge into two groups, one that remains at the plateau level (ca. 3 x 109 cells/ml) and one that decreases with decreasing soluble-Al content. The values in the second group are associated with the 1 and 10 mM Al, pH 8.3, treatments.
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FIG. 5. Changes in the measured concentration of dissolved sulfide, motile-cell population density, and platinum electrode potential for pH 6.5, 7.2, and 8.3 treatments at different measured soluble-Al concentrations.
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Development of spirilloid morphology generally occurs as cultures age or in response to a specific biochemical stress, such as high levels of antibiotics or sulfite, or low levels of Mg2+ (34). Severe stress apparently does not result in morphological changes. For example, only a few spirilloid bacteria were seen in one sampling in one of the pH 5 treatments, where stress was clearly severe. In contrast, maximal numbers of spirilloid bacteria were seen during the first 28 days in the pH 8.3 treatments containing added Al. No antibiotics were present, sulfite accumulation was not expected (particularly during the first 7 to 14 days, when spirilloid maxima were reached), and analyses of the 56-day solutions for Mg (including an analysis of the third replicate sampled 28 months after initiation of the experiment; Table 3) showed no change in concentration from the original values. In the absence of added Al, at most 2% of the bacteria at pH 8.3 were spirilloid, whereas as much as 80% were spirilloid in the 10 mM Al treatment. During the last 28 days of the experiment, the likely exhaustion of the lactate supply in the 10 mM Al treatment would have placed severe stress on the SRB population, thereby causing both a decline in the total number of bacteria and complete reversion to the vibrio morphology.
In contrast to the treatments at pH 8.3, a direct toxic effect of Al was seen at the 1 and 10 mM Al levels for the pH 6.5 and 7.2 treatments. In three of these four treatments, no spirilloid bacteria were seen after the first day. In the 1 mM Al, pH 7.2, treatment, which showed the least response to Al toxicity of the four treatments, moderate levels (20 to 30%) of spirilloid bacteria were seen after the first 2 weeks of incubation. As in the pH 5 treatments, where severe pH stress was applied, it seems that D. desulfuricans under severe Al stress does not exhibit the spirilloid morphology. This morphology apparently indicates an intermediate state of stress where biomass growth occurs but cell division is inhibited.
Aluminum speciation calculations.
Calculations of the solubility of possible solid phases in equilibrium with the final solution composition show that at all of the pHs involving 10 mM Al, the solution was supersaturated with respect to crystalline Al(OH)3 (Fig. 6). At pHs of ≤7.2, supersaturation with respect to the amorphous Al hydroxysulfate phases jurbanite (AlOHSO4 · 5H2O) and basaluminite [Al4SO4(OH)10 · 5H2O] was also seen. X-ray diffraction patterns of the solids, in both the moist and air-dried states, yielded very broad peaks with no evidence of crystallinity (data not shown). Although the solutions were in apparent equilibrium with amorphous Al(OH)3 for the sterile pH 8.3 treatment and both pH 6.5 treatments, the trends suggested by the pH 7.2 data suggest that this may have been coincidental. As the soluble-Mg data showed no evidence of the formation of an Al-Mg hydroxy compound, the solid phase most likely consisted of an amorphous Al-hydroxy gel whose crystallization was frustrated by the slow ligand exchange rate and by inclusions of minor amounts of sulfate and lactate.
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FIG. 6. Solubility of Al after 56 days in inoculated (open squares) and uninoculated (filled squares) 10 mM treatments. Solubilities of possible solid phases, i.e., amorphous and crystalline gibbsite [Al(OH)3], jurbanite [Al(OH)SO4 · 5H2O], and amorphous basaluminite [Al4(OH)10SO4 · 5H2O], in equilibrium with the 56-day solution composition are also shown. Hydroxysulfate phases assume a 20 mM SO4 concentration. am, amorphous; cr, crystalline.
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The results of these speciation calculations showed that when the tridecamer cation was considered, it completely dominated the Al toxicity effect (Fig. 7, left column). No other Al species exceeded the critical 5 x 10-5 M concentration threshold, showed such a wide range of concentrations (24 orders of magnitude!), or exhibited a pattern that suggests a direct link to the toxicity. Indeed, the concentration of the tridecamer was essentially negligible until a total Al concentration of 10-5 M was exceeded. When the tridecamer was excluded from the calculation (Fig. 7, right column), the Al(OH)3(aq) and Al(OH)4- species both seemed to contribute to the toxicity effect, although the neutral species seemed to conform more closely to the cell population density trend observed. A toxic effect of the neutral species would be reasonable given that most cell defenses are devoted to combating ionic species. The sum of the monomers, as expected, yielded the same correlation with toxicity as seen for total Al and the tridecamer cation. In both sets of calculations, the maximum concentrations of the Al3+ ion and the organic complexes of Al were at least 4 orders of magnitude lower than that of the most concentrated Al species (data not shown) and did not correlate well with the cell concentration trends, suggesting that they made little or no contribution to the toxic effect at these pH levels.
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FIG. 7. Relationship between measured motile-cell population density and possible soluble-Al species in the pH 6.5 and 7.2 treatments predicted by thermodynamic calculations that include (a to c) or exclude (d to f) the Al13O4(OH)247+ tridecamer cation.
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In the laboratory, where solutions having known tridecamer concentrations can be prepared, the tridecamer ion has been shown to be significantly more toxic than other forms of Al to wheat plants (through inhibition of root growth [31, 36]), an aquatic alga (Chlorella pyrenoidosa [29]), and a bacterium (Rhizobium trifolii [44, 45]). A good argument can be made for its toxicity to fish, either directly or as a precursor to precipitates that form on the gill surface under conditions in which acidic and basic waters mix (references 4 [p. 156] and 6).
To verify the possible presence or absence of the tridecamer ion in this experiment, we attempted to analyze a freshly prepared sample (pH 6.5 with 10 mM Al added) by solution 27Al NMR spectroscopy. The only signal obtained was a very weak, broad peak near 15 ppm that was difficult to distinguish from the instrumental background. No evidence of a discrete tridecamer ion (a sharp line near 63 ppm) was seen. The presence of SO42- (17) could have prevented the formation of the tridecamer ion. In addition, Thomas et al. (39) noted that high lactate-Al ratios (>3:1) prevent formation of the tridecamer ion as a result of strong complexing of monomeric Al by lactate and the slow kinetics of ligand exchange. As the initial lactate-Al ratio in our experiment was 4:1, this factor could also have prevented tridecamer ion formation.
We concluded, therefore, that Al is toxic to D. desulfuricans G20 (and, presumably, other SRB) over a limited neutral-pH range and when its aqueous solubility exceeds 5 x 10-5 M. Both the neutral Al species [Al(OH)3(aq)] and the monomeric anion [Al(OH)4-] species are likely involved in the toxic effect. Although speciation calculations suggest that the polymeric tridecamer cation could account entirely for the toxic effects seen, no direct evidence of this species was found under our experimental conditions. No evidence of the toxicity of monomeric Al cations was seen either, although such toxicity would be overshadowed by the general pH-induced toxicity seen at the pHs at which these cations are the dominant species. Soluble Al at concentrations of <5 x 10-5 M puts moderate stress on SRB, causing a shift in morphology from vibrio to spirilloid that is particularly pronounced at pHs of >8. The vibrio morphology dominates under normal growth conditions and when severe nutritional or pH-induced stress occurs, whereas the spirilloid morphology is indicative of moderate stress conditions induced by nutritional deficiency or soluble Al.
This research was supported by the Natural and Accelerated Bioremediation Research (NABIR) program, Office of Biological and Environmental Research (OBER), U.S. Department of Energy (DOE), and was performed at the W. R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at the Pacific Northwest National Laboratory (PNNL). The PNNL is operated for the DOE by the Battelle Memorial Institute under contract DE-AC06-76RL0 1830.
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