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Applied and Environmental Microbiology, August 2003, p. 4511-4518, Vol. 69, No. 8
0099-2240/03/$08.00+0 DOI: 10.1128/AEM.69.8.4511-4518.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Division of Food Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD, United Kingdom
Received 9 January 2003/ Accepted 27 May 2003
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Studies of several Campylobacter outbreaks have shown undercooked poultryspecifically chickento be the source of infection (6, 15, 20). However, despite these documented outbreaks, Campylobacter continues to be a primarily sporadic disease (23). Campylobacters readily colonize poultry (9) and seem well adapted to the avian gut (4). This may partly explain the uphill battle of poultry farmers in the prevention of Campylobacter colonization of their flocks. Even when implementing and maintaining strict hygiene procedures, preventing Campylobacter colonization is difficult (22). Once present in a flock, horizontal transfer between birds occurs rapidly, with one study reporting 100% colonization in just 2 days (12).
The problem of Campylobacter colonization of poultry in the broiler house is exacerbated when the birds are slaughtered, as negative flocks are often mixed with positive flocks, thereby leading to large-scale cross-contamination (21). As up to 76% of flocks slaughtered are Campylobacter positive (13), control of contamination remains a major challenge to the industry. While postprocessing treatment and storage conditions may reduce Campylobacter contamination on broiler carcasses, in some cases (30) these treatments are considered to have a negligible impact on human exposure to this organism (16). A recent survey in the United Kingdom demonstrated that 83.3% of chicken samples were Campylobacter positive (18). In addition, Campylobacter is able to survive on kitchen surfaces for several hours after contamination (5), thus leading to cross-contamination events in the home.
General concerns regarding the use of chemical additives in food production have led the European Union to ban many antibiotics and growth promoters used in the rearing of broiler chickens. This includes virginiamycin, spiramycin, and tylosin phosphate, which were banned in 1998. Concern regarding reports of increasing antibiotic resistance in pathogens harbored by farm animals has only strengthened the European Union's resolve to phase out the use of antibiotics in food production altogether. The use of antibiotics in the United States has also come under scrutiny, with the Food and Drug Administration proposing the discontinuation of the use of fluoroquinolones in poultry production. The therapeutic use of specific bacteriophage may help fill the void left by the abandonment of antibiotics. Bacteriophages have unique advantages over antibiotics in that they are both self-replicating and self-limiting. Their host specificity also avoids the dysbiosis that is often observed when using broad-spectrum antibiotics.
Campylobacter bacteriophages have been isolated from sewage and abattoir effluent (27). These phages were found to possess double-stranded DNA genomes and have been ascribed to the Myoviridae and Siphoviridae families (25). Phage isolates have been used to form typing schemes and complement other typing methods (7, 8, 26). The lytic capability and host specificity of phages also present the opportunity of using them to reduce the numbers of campylobacters emanating from animal sources and subsequently reducing cross contamination during processing. Generally, a reduction in the numbers of campylobacters entering the human food chain is likely to have a beneficial effect on the disease burden. In particular, the rearing of broiler chickens is a prime target for intervention with bacteriophages, given the reported scale of Campylobacter colonization of broilers (12) and the relatively large numbers of campylobacters present in the gastrointestinal tract and secreted by colonized birds (31). As a first step toward implementing these strategies, we sought to establish whether bacteriophages were already present on retail poultry in order to gauge the possible impact of intervention and to establish whether these strategies would introduce any new biological elements into the human food chain.
To date, there have been no reports of the isolation of Campylobacter phages from retail chicken products. The aims of this study were to establish recovery methods for Campylobacter bacteriophages from poultry meat and to determine the incidence and characteristics of phages from fresh and frozen retail poultry in the United Kingdom. Here we report the isolation of Campylobacter phages from retail poultry meat and the characterization of these phages in terms of their genome size, morphology, and lytic profiles by using National Collection of Type Cultures (NCTC) and contemporary fla-typed poultry Campylobacter isolates.
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2 (NCTC 12674, ATCC 35922-B2) was also supplied by the Central Public Health Laboratory and is a constituent of the phage-typing scheme (7). Bacteriophage
2 was used as a positive control to estimate the recovery efficiency from chicken skin. This phage consistently gives clear, distinct plaques on the C. jejuni PT14 propagating strain.
Isolation of Campylobacter from retail poultry.
Retail chicken portions were purchased from a United Kingdom supermarket selected on the basis of different product bar code and processing unit numbers to give a cross section of samples from United Kingdom producers. The portions were from six different producers, all based in the United Kingdom. Swabs dipped in Maximum Recovery Diluent (Oxoid code CM733; Basingstoke, United Kingdom) were used to wipe a 10-cm2 area of chicken skin, and these were then used to inoculate plates of modified Cefoperazone Charcoal Deoxycholate Agar selective medium (Oxoid code CM739; selective supplement code SR155). The plates were then incubated at 42°C for 48 h in microaerobic conditions (5% O2, 5% H2, 10% CO2, 80% N2) before being examined for typical Campylobacter colonies. Colonies were examined by Gram stain and wet mount for typical Campylobacter morphology and motility, respectively. After subculturing the isolates on Columbia Blood Agar plates (Oxoid code CM331), oxidase, catalase, and hippurate tests were applied for further confirmation and speciation.
Bacteriophage propagation.
The propagating Campylobacter strain (C. jejuni PT14) was subcultured on Columbia Blood Agar for 18 h at 42°C under microaerobic conditions, and the cells were harvested in 20 ml of 10 mM MgSO4 solution. Cell density was adjusted to that of a MacFarland no. 3 standard (approximately 109 CFU per ml) by using freshly prepared standards, and the suspension was kept on ice until required. By using these cells, the bacteriophages were propagated as described by Frost and colleagues (7), amplified by using plate lysates, and resuspended in SM buffer (50 mM Tris-HCl [pH 7.5], 0.1 M NaCl, 8 mM MgSO4, and 0.01% gelatin [Sigma G-1393]).
Isolation of phages from chicken skin.
Sections of chicken skin (10 cm2) were removed and stomached in 10 ml of SM buffer in a Seward Lab Blender 400 for 5 min by using filter stomacher bags (BA6041/STR; Seward). The stomachate was then centrifuged at 2.5 x g for 10 min at 20°C, and the supernatant was filtered through a 0.45-µm nitrocellulose membrane (Sartorius, Gottingen, Germany). One hundred microliters of this filtrate was added to 400 µl of PT14 suspension and incubated aerobically for 30 min at 42°C. After incubation, the suspension was added to 5 ml of NZCYM overlay agar (NZCYM broth [Difco, Oxford, United Kingdom] with 0.6% bacteriological agar [Oxoid Agar No. 1, code L13]), gently shaken, and added to prewarmed (42°C, 30 min) NZCYM base agar (NZCYM broth with 1% bacteriological agar). Plates were incubated microaerobically at 42°C for 24 h and examined for the presence of plaques.
Phage recovery and survival.
The efficiency of phage recovery was examined by spotting out serial dilutions of a
2 suspension onto a 10-cm2 area of skin from chicken portions in triplicate and left to dry at room temperature for 1 h. The skins were then removed and processed as described above. To examine the survival of bacteriophage
2,
108 PFU were spotted on each of 11 chicken portions in triplicate and left to dry. Frozen chicken portions were defrosted for 24 h at 4°C prior to inoculation. After inoculation, portions were individually sealed in sterile containers and stored at 4°C (fresh chicken) or refrozen at -20°C (frozen chicken). In parallel, uninoculated samples were used as a negative control. Samples were initially taken 1 h after inoculation and then at 24-h intervals thereafter. Serial dilutions of the recovery medium were plated in NZCYM overlay medium for phage enumeration. Phage recovery data were recorded as the mean percentage recovery ± standard deviation (SD) over a 10-cm2 area of chicken skin. This procedure was repeated for the phages isolated from the retail chicken portions, representing five different lytic spectra classes.
Phage genome size determination using PFGE.
For preparation of phage genomic DNA, 10 µl of a 1010 PFU/ml suspension of phages, prepared using the centrifuge concentration method described by Sambrook et al. (28), was diluted in 40 µl of TE buffer (10 mM Tris, 1 mM EDTA [pH 7.5]). This was mixed with an equal volume of 1.4% molten agarose (pulsed-field gel electrophoresis [PFGE] grade) in TE buffer and dispensed into plug molds (Bio-Rad). The plugs were allowed to set at room temperature and were then transferred to 60-mm-diameter petri dishes containing 5 ml of lysis buffer (100 mM EDTA, 10 mM Tris [pH 7.2], 1% Sarkosyl [wt/vol], 0.1 mg of proteinase K per ml; reagents from Sigma). The plates were incubated at 55°C for 18 h with gentle shaking to lyse the phage capsids and digest the protein components. The lysis solution was discarded and proteinase K was inactivated by the addition of 5 ml of 1 mM phenylmethylsulfonyl fluoride in wash buffer (50 mM EDTA, 20 mM Tris [pH 7.2]) and incubated for 1 h at room temperature with gentle shaking. The plugs were then washed three times for 20 min each with successive changes of wash buffer at room temperature with gentle shaking. A 2-mm slice of each plug was then inserted into the wells of a 1% agarose gel. The gel was run using a Bio-Rad CHEF DRII system in 0.5 TBE for 18 h at 200 V with a switch time of 30 to 60 s. Lambda concatemers (Bio-Rad) were used as markers.
For restriction endonuclease digests, a 2-mm slice of each plug was incubated at 37°C overnight with 10 U of restriction enzyme in 100 µl of digestion buffer prepared according to the manufacturer's instructions (Promega Ltd., Southampton, United Kingdom). Enzymes used were TaqI, DpnI, SspI, MseI, HaeIII, DraI, MboI, HindIII, PstI, EcoRI, and EcoRV. The plug digests were then transferred to a 1% agarose gel and run using the Bio-Rad CHEF DRII system as described above but with a switch time of 2 to 10 s for better resolution of the smaller DNA bands.
Examination of phage morphology (electron microscopy).
Eight microliters of a 108 PFU/ml suspension of phage was added to the surface of a glow-discharged carbon-coated Pioloform grid and fixed for 2 min using glutaraldehyde vapor. Excess sample was removed, and the grid was washed with a drop of double-distilled water. Negative staining was performed by adding 1 drop of 0.5% uranyl acetate to the grid surface, thereby removing excess stain immediately. The grids were allowed to air dry for 20 min and were then observed with a JEOL 100CX transmission electron microscope.
Lytic spectra.
Isolated phages were plaque purified and propagated to a titer of approximately 108 PFU/ml (titer determined on PT14). Serial dilutions of these phage stocks were then prepared and screened by using the method of Miles-Misra (19) for their ability to infect 11 NCTC Campylobacter strains representing the phage types present in the United Kingdom typing scheme (7) and 18 campylobacters exhibiting different fla types isolated from retail chicken in this study. The Campylobacter fla typing was performed in accordance with the protocol described by Alm et al. (3) using forward primer pg50 (5'-ATG GGATTTCGTATTAAC-3') for flaA, forward primer RAA9 (5'-AAGGATTTAAAATGG GTTTTAGAAT AAACACC-3') for flaB, and primer RAA19 (5'-GCACC(CT)TTAAG(AT)GT (A G)GTTACACCTGC-3') as a universal reverse primer for both genes.
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2). Table 1 shows the detection limit determined for the recovery of phage
2 following the addition of serial dilutions of the phage onto retail chicken at 4°C. The method will reliably detect at least 2 x 103 PFU per 10-cm2 area of chicken skin. These results are based on three replicates. |
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TABLE 1. Validation of the bacteriophage recovery methoda
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2 from surface of chicken skin over time.
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FIG. 1. (A) Recovery of phage 2 (NCTC 12674) from chicken skin stored for 10 days under fresh (4°C; ) and frozen (-20°C; ) conditions. Triplicate 10-cm2 sections of chicken thigh skin were inoculated with 108 PFU of 2, and then percent recovery of this inoculum (± SD) was recorded at 24-h intervals. (B) Recovery of six Campylobacter bacteriophage chicken skin isolates exhibiting different lytic spectra. 108 PFU of each phage were applied to fresh chicken thigh skin in triplicate and stored for 10 days at 4°C. The percent recovery of the initial inoculum (± SD) was recorded at 24-h intervals. Key: , W2; , W3; , W4; , W5; X, W8; and , W10. In all cases, the initial samples (day 1) were collected 1 h after inoculation.
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Campylobacter phages were recovered from the skin of 34 fresh chicken thighs out of the 300 tested (11%). Twenty-seven (79%) of the phage-positive chicken thighs were from free-range chicken products, compared with five (15%) and two (6%) from standard and economy products, respectively. A single-factor analysis of variance demonstrated that the observed incidence on the free-range product is significantly different (P < 0.001) from that of the other products. The mean number of phages isolated from the whole-chicken skin surface was 4.59 x 105 PFU (recovery ranged from 1 x 102 to 4 x 106 PFU). Phage recovery from frozen chicken thighs was unsuccessful. Given that we found an 80% reduction in the recovery of phage
2 from frozen samples, this result may not be unexpected. It was also noted that the presence of the host was reduced on frozen samples.
fla typing of Campylobacter isolates and lytic spectra of phage isolates.
In parallel with the phage isolation, campylobacters were also isolated from the same retail chicken samples. The majority of isolates (96%) were C. jejuni, and based on published findings, the rest were presumed to be C. coli or C. lari (17, 18). Campylobacter was isolated from 100% of free-range chicken portions compared with 75 and 62% for standard and economy products, respectively. Campylobacter was isolated at a lower frequency from frozen chicken samples, with 9% of standard and 12% of economy products being positive. Sixty of the Campylobacter strains contemporaneously isolated from fresh chicken samples were fla typed into 18 classes. Strains of each fla type were selected for use in the investigation of the lytic spectrum of the bacteriophage isolates, along with 11 NCTC strains that represent the various Campylobacter classes discriminated by the phage-typing scheme adopted in the United Kingdom (7). The lytic spectra of the phage are presented in Table 2. The 34 independent phage isolates could be assigned to eight classes based on their host range. The bacteriophage isolates assigned to each class are as follows: W1, W2, W6, and W7 (Class I); W3, W12, W14, W16, and W18 (Class II); W4, W13, W15, and W17 (Class III); W5, W9, and W11 (Class IV); W8 (Class V); W10 (Class VI); W19, W25, W26, W27, W31, and W34 (Class VII); and W20, W21, W22, W23, W24, W28, W29, W30, W32, and W33 (Class VIII). The phage within classes containing multiple isolates arose from independent chicken portions.
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TABLE 2. Lytic spectra defining eight different classes of bacteriophage isolated from fresh retail chickena
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TABLE 3. Morphological and genetic characteristics of phage grouped according to their lytic spectraa
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FIG. 2. Gel showing restriction fragments generated from digesting phage genomes with endonuclease HhaI. Lanes are as follows: 1, /HindIII marker; 2, undigested W2; 3, digested W2; 4, undigested W3; 5, digested W3; 6, undigested W4; 7, digested W4; 8, undigested W5; 9, digested W5; 10, undigested W8; 11, digested W8; 12, undigested W10; 13, digested W10.
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The phage selected for genome analysis were also examined by electron microscopy. Examination of the phages showed them all to have icosahedral heads and rigid contractile tails whichtogether with their dsDNA genomesclassify them as members of the Myoviridae family. Electron micrographs are presented in Fig. 3. Variation in the head diameters and tail lengths allowed them to be further differentiated. Class members were isolated from all types of fresh chicken products.
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FIG. 3. Electron photomicrographs of phages isolated from fresh chicken skin representing eight lytic spectra classes. The icosahedral head and rigid contractile tail are typical features of the Myoviridae family. A, W2; B, W3; C, W4; D, W5; E, W8; F, W10; G, W19; H, W20. Bar represents 250 nm. All electron photomicrographs taken at x100,000 magnification with a JEOL 100CX transmission electron microscope.
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2 shown in Fig. 1A (data not shown). In these experiments, initial high recovery rates were recorded (ranging from 84% for W3 to 98% for W5), followed by a decrease in titer 24 h postinoculation and freezing, at which time the recovery ranged from 18 to 30% and thereafter remained stable for the rest of the time course. |
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2 could be efficiently recovered from the surface of frozen retail chicken that had been thawed prior to application. However, subsequent freeze and thaw resulted in a fall in the recovery by almost 80%. Birds intended for freezing are scalded at a higher temperature (14)and this, together with the subsequent freeze-thaw cycle, is known to change the skin surface structure (2). Our results suggest that phages may not attach as well to skin surfaces following such treatment, thereby giving higher initial recovery rates. The subsequent drop occurs due to the loss of phage viability on freezing, to which members of the Myoviridae family are particularly susceptible (1).
The lytic spectra of the individual phage isolates revealed similarities in host range. Phages exhibiting the same lytic spectrum were placed in one of eight host range classes. The host ranges of all the retail poultry isolates differed markedly from the lytic spectrum of the
2 positive control. The similarity in lytic profiles of independent phage isolates may suggest that some form of selection has taken place. This may reflect the ability of bacteriophages to survive on the chicken surface during processing and/or the ability to survive the storage conditions applied. The genome sizes and morphologies of the phages could not be correlated with any particular source of poultry meat. However, it has been reported that certain Campylobacter fla types are able to survive abattoir processing better than others (21), and this may determine the survival of any predator phages that are associated with them.
Free-range chickens are subject to environmental exposure and are therefore more likely to encounter a wider range of campylobacters and their phages. We observed a significant difference in the isolation of phages from free-range products compared with standard and economy products which may be explained in part by the frequency of Campylobacter-positive carcasses coming from the free-range sector. Greater exposure to the environment consistent with organic and free-range farming practices has been purported to be the cause of a generally higher incidence of Campylobacter in these types of flocks (11). The probability of phage isolation will increase with the presence of a susceptible host; thus, chickens with higher rates of carriage of campylobacters are more likely to be sources of phages. However, with widespread cross contamination in the abattoir, it is likely that the Campylobacter and phages found on a single carcass arise from more than one source. In addition to this, we have found that the recovery of the phage isolates inoculated onto chicken skin show marked variation. Four of the six chicken skin isolates tested yielded a higher rate of recovery over a 10-day period when applied to chicken skin and retained at 4°C (Fig. 1B) when compared with the
2 control (Fig. 1A). Most notably, phage W5 could be recovered at >90% of the inoculum throughout the course of the experiment.
The genome sizes and morphological characteristics of the phage fall within the ranges previously reported in the literature (25). We note that phage W5 shows two distinct bands by PFGE (i.e., 110 and 150 kb) and that these bands may be distinguished by digestion with HhaI. The upper band was refractory to digestion, whereas the lower band generated fragments that correlate with the size of the lower band. This suggests that the two DNA molecules are distinct, but the reason for their presence in a purified phage preparation remains to be investigated.
Phages were only recovered from chicken samples that also harbored campylobactersa finding that is not surprising, as phages will originate from an environment containing host cells. However, the survival data for phages inoculated onto chicken skin and incubated in retail storage conditions shows a general decline, thus suggesting that replication of the phage is not occurring on the surface of the samples. This is not surprising, as Campylobacter does not grow on food samples stored under these conditions and hence will not have an active metabolism. There are multiple variables that dictate the survival of both phage and Campylobacter throughout commercial poultry production. These factors may not necessarily allow both the phage and its host to survive at the end of processing. The multiple cross-contamination events and survival variables of Campylobacter and phages in the processing plant would make any attempt to correlate the phage with a host from a common chicken source of little value.
In conclusion, we have demonstrated that Campylobacter phages can survive on fresh and frozen retail poultry products. We have successfully implemented a method to recover Campylobacter phages from 34 independent retail chicken samplesa source not previously examined for the presence of Campylobacter phages. The finding that phages are present on retail poultry products demonstrates that the use of phages as a biocontrol agent would constitute a minimum intervention that would not ultimately introduce any entity into food products that is not already present.
We thank Jenny Frost and colleagues at the Central Public Health Laboratory (Colindale, London, United Kingdom) for their donation of the phages and the Campylobacter strains used in their typing scheme. We also thank Stefan Hyman at the University of Leicester for his expert assistance with the phage electron microscopy.
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