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Applied and Environmental Microbiology, November 2004, p. 6428-6434, Vol. 70, No. 11
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.11.6428-6434.2004
Water Resources Division, U.S. Geological Survey, Menlo Park, California
Received 8 April 2004/ Accepted 4 July 2004
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106 cells ml1 at the end of the incubation. This indicated that dissimilatory As(V) reduction in these populations was linked to growth. However, As(V)-respiring bacteria were found to be present, albeit at lower numbers (
102 ml1), in freshly sampled periphyton. These results demonstrate the presence of a bacterial population within the periphyton communities that is capable of two key arsenic redox transformations that were previously studied in As-contaminated environments, which suggests that these processes are widely distributed in nature. This assumption was reinforced by experiments with estuarine samples of Cladophora sericea in which we detected a similar capacity for anaerobic As(V) reduction and aerobic As(III) oxidation. |
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The mobility and toxicity of As in aqueous environments is controlled by oxidative and reductive (redox) microbial transformations of the element between its two most abundant inorganic oxyanions, arsenate [As(V)] and arsenite [As(III)]. Arsenate is the predominant species in aerobic surface waters. Arsenite predominates in reducing anaerobic environments but may also be present as a metastable species in aerobic settings due to its slow oxidation kinetics and biologically mediated reduction reactions (46). While both of these species are water soluble and toxic to a wide range of organisms, As(V) is highly sorptive to the surface of iron, manganese, and aluminum oxide minerals that are commonly present in sediments and soils. Arsenite adsorbs to most mineral surfaces less strongly than As(V) and is therefore generally the more mobile and bioavailable form.
Microbial redox transformations of arsenic between the As(V) and As(III) species can result from biochemical detoxification mechanisms that permit the organism to exclude or expel environmental arsenic from its cellular interior (38). Alternately, other redox transformations of these arsenic species include metabolic pathways linked to energy gain and growth for various heterotrophic and chemoautotrophic prokaryotes (25, 27, 31, 33, 43, and S. Silver and L. T. Phung, submitted for publication). While microbial reactions that utilize the reduction of As(V) or the oxidation of As(III) as strategies for arsenic detoxification and resistance have been identified in a wide range of organisms, detoxification processes alone cannot adequately account for the changes in arsenic speciation that occur upon experimental incubation of natural materials, such as sediments or anoxic waters (7, 28, 34). Most field-oriented studies of this kind have in turn focused on As-rich or As-contaminated settings (3, 14, 17, 18, 22, 34, 37, 46).
Over the past decade, a number of novel prokaryotes have been described that obtain energy for growth from metabolic reactions involving arsenic (31). These As-based metabolic pathways include dissimilatory (respiratory) As(V) reduction and chemoautotrophic As(III) oxidation. Aerobic, chemoautotrophic As(III)-oxidizing bacteria have been isolated from gold mines (16, 40, 41). Anaerobic As(III) oxidation coupled to nitrate was reported for a novel
-Proteobacterium, strain MLHE-1, isolated from arsenic-rich Mono Lake, California (14, 32). Hydrochemical data suggests that biological As(III) oxidation coupled to nitrate occurs in other As-contaminated, anoxic environments, including a freshwater lake (42) and a groundwater aquifer in Bangladesh (12). Dissimilatory arsenate reduction (DAsR) has been described for about 20 strains of anaerobic prokaryotes from a wide variety of environments (27, 30, 31, 33), including recent isolations of chemolithoautotrophs that use sulfide (13) or H2 (21) as electron donors. Therefore, arsenic-based metabolism is widespread among phylogenetically diverse organisms isolated from arsenic-rich environments, and in turn these microbes are also adapted to a wide range of pHs, salinities, and temperatures.
Almost all As(V)-respiring organisms studied to date are also capable of using other electron acceptors in addition to As(V), most commonly nitrate (31, 43). The one exception to this general observation is a recently isolated chemoautotroph, strain MLMS-1 (13). This suggests that prokaryotes capable of DAsR need not be restricted to As-rich environments. Similar reasoning also extends to chemoautotrophic As(III) oxidizers, because they either can use other inorganic electron donors besides arsenic (e.g., sulfide or hydrogen) or can grow as conventional heterotrophs (32, 40, 41). However, we know little about the potential for microbial communities found in As-free environments to adapt to added As inputs, either by reducing As(V) or oxidizing As(III).
Here we report microbial As(III) oxidation and dissimilatory As(V) reduction by live samples of freshwater periphyton (Cladophora sp.) collected from San Francisquito Creek, a suburban freshwater drainage in Palo Alto, Calif., that is characterized by low (<13 nM) concentrations of ambient arsenic. In a much earlier investigation it was reported that these algal periphyton materials were copopulated by dense bacterial assemblages that were living off the cellular exudates generated by the algal component. We noted that freshly recovered periphyton samples had the constitutive ability to sustain high rates of denitrification when dark incubated in the absence of oxygen (44). The respiratory nitrate reductases, respiratory arsenate reductases, and arsenite oxidases of bacteria are all members of the broad dimethyl sulfoxide reductase family of Mo-containing enzymes (2, 24, 39), and many dissimilatory arsenate reducers can commonly respire nitrate as well (31, 43). Hence, we hypothesized that these communities would not be constrained by the availability of trace elements like Mo and would readily be able to respire arsenate by de novo synthesis of respiratory arsenate reductase if it was present in their genome. Therefore, we conducted more experiments with these periphyton materials to determine if they would respond quickly to perturbations made with arsenic oxyanions, as they had demonstrated previously for nitrate and denitrification activity (44). We chose a benthic periphyton system, because such a community would experience large diel variations in oxygen tension as a response to daytime net photosynthesis and nighttime net respiration, as was first noted in shallow marine mats (4, 36). Such an environment could provide niches for both As(V) respirers and As(III) oxidizers.
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Samples of creek water plus the homogenized periphyton as well as creek water without periphyton were incubated under aerobic or anaerobic conditions. For samples that received periphyton, wet algal material (0.25 g [wet weight], 0.04 g [dry weight]) was weighed into a 57-ml serum bottle prior to the addition of 30 ml of creek water. For incubations of creek water alone, the periphyton was omitted and 30 ml of creek water was dispensed into an empty serum bottle. Aerobic bottles were plugged with a permeable foam seal, allowing exchange with the atmosphere during incubation. Creek water for anaerobic samples was bubbled with O2-free N2 for 30 min prior to dispensing under a flow of N2. The anaerobic bottles were then crimp sealed with a butyl rubber stopper and flushed for 10 min with O2-free N2. Water and algae in heat-killed controls were autoclaved for 1 h at 121°C prior to any further additions.
Electron acceptors, electron donors, and inhibitors were added by syringe from anaerobic stock solutions. Experiments were conducted with As(V) added as Na2HAsO4 or with As(III) added as NaH2AsO3 at either low (10 µM) or high (1 mM) concentration. In samples which contained periphyton, the algal material itself served as the electron donor. Samples of As(V)-amended creek water that lacked algae were incubated with or without the addition of sodium lactate (1 mM) to serve as an electron donor. To determine if nitrate would either inhibit As(V) reduction or serve as an electron acceptor for anaerobic As(III) oxidation, a set of incubations was prepared with equimolar concentrations (1 mM) of nitrate and As(V) or As(III). Chloramphenicol (final concentration, 4.0 mg/ml) was added to a final set of As(V)-amended (10 µM and 1 mM) anaerobic incubations in order to block the synthesis of de novo enzymes. For the experiments with the estuarine C. sericea material, we only tested for reduction of 1 mM As(V) and oxidation of 1 mM As(III) with anaerobic and aerobic incubations, respectively.
All incubations were performed with triplicate bottles representing each experimental condition. Bottles were incubated in the dark to avoid photosynthetic activity and O2 production by the periphyton during the course of the experiment. The bottles were incubated at 20°C with constant rotary shaking (200 rpm), and the liquid phase was periodically subsampled (0.5 ml) by syringe. Subsamples were filter centrifuged (Spin-X centrifuge tube filters; pore size, 0.2 µm; Corning Inc., Corning, N.Y.) and diluted in deionized water prior to species-specific determination of As(III) and As(V) concentrations.
Determination of MPNs of DAsR bacteria.
The population density of DAsR bacteria within periphyton materials was determined by a three-tube most probable number (MPN) technique (34). Periphyton samples were prepared as described above at the following As(V) concentrations: 0, 1, and 5 mM. Each experimental condition was prepared in duplicate. Three 1-ml aliquots of the liquid phase were collected by syringe from each bottle at the beginning and at completion of As(V) reduction in the bottles. The length of the incubation period was determined by the time it took for the added As(V) to be completely reduced to As(III). For the 1 mM addition this was achieved in 10 days, but it required 58 days for the 5 mM addition. These 1-ml aliquots were then decimally diluted via serial transfers into triplicate sets of sealed, anaerobic culture tubes that contained 9 ml of freshwater media (35), with 5 mM lactate as electron donor and 5 mM As(V) as electron acceptor (highest decimal dilution, 1010). The inoculated culture tubes, in turn, were incubated at
20°C in the dark for 27 days and then were subsampled for determination of As(III) and As(V) by high-performance liquid chromatography (HPLC). Following the incubation, the appearance of As(III) in a given tube was used to indicate the presence of As(V)-reducing microbes at that particular dilution level.
Radioisotope experiment.
Anaerobic incubations were prepared as described above, with the exception that an artificial creek water mixture was used in order to eliminate the presence of any ambient electron acceptors, such as nitrate. The artificial creek water consisted of phosphate-buffered deionized water (0.225 g of each K2HPO4 and KH2PO4 per liter) that was amended with NaCl (0.46 g/liter) and adjusted to pH 7.3 with 8.4% NaHCO3. The incubations were inoculated with fresh algae (0.25 g [wet weight]) that had been rinsed, centrifuged, and decanted three times with 25 ml of artificial creek water. The incubations were amended with As(V) (0 µM, 10 µM, 1 mM, or 5 mM) and uniformly labeled [14C]D-glucose (3.5 µCi; specific activity, 175 mCi/mmol; final added glucose concentration,
0.67 µM; ICN Pharmaceuticals, Irvine, Calif.). We monitored the As(III) and As(V) concentrations in a set of nonradioactive duplicates over the course of the incubation to ensure that adequate time had passed for complete reduction of As(V) at all concentration levels. After 15 days, the radioactive samples were injected with 3 N HCl (1 ml) to terminate the experiment and degas CO2 from the liquid phase. The headspace was then analyzed for 14C-labeled CO2 and CH4. Autoclaved controls and live samples incubated without As(V) were also prepared and analyzed.
Analytical techniques.
The total As concentrations of San Francisquito Creek and Brisbane Lagoon waters were measured by hydride generation-atomic absorption spectrophotometry (HG-AAS) using a Perkin Elmer 5000 atomic absorption spectrophotometer equipped with a Varian VGA-76 hydride generation accessory. Species-specific analysis of As(III) and As(V) concentrations in samples containing micromolar levels of arsenic were performed by HPLC-HG-AAS (23). This flowthrough analytical method permits nanomolar concentrations of As(III) and As(V) to be determined individually by separating the two species on an ion-exchange chromatography column that is directly interfaced with the spectrophotometer's hydride generation accessory. A Dionex Ion Pack AS-11 column was used with a 30 mM NaOH-1% methanol eluent mixture (flow rate, 1.0 ml/min). Retention times for As(III) and As(V) under these conditions were 2.3 and 3.9 min, respectively (detection limit for As,
70 nM). Arsenic speciation in samples containing millimolar levels of As was determined by HPLC with UV to visible wavelength detection (14). Nitrate was measured by ion chromatography with conductivity detection (33). The activity of 14C-labeled CO2 and CH4 in the gas phase of the radioisotope experiments was measured via gas chromatography in conjunction with gas proportional counting (5), using a Raytest Raga 93 model gas proportional counter attached to an HNU GC 301 gas chromatograph with a 3.04-m Porapack Q/N (80:20 mix) column.
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= 0.5). The ambient inorganic arsenic concentration in the saline Brisbane Lagoon was 36 nM.
Anaerobic incubations.
Freshwater periphyton samples showed noticeable As(V) reduction within 1 day of incubation and were able to completely reduce 10 µM As(V) to As(III) within 4 days (Fig. 1A). No As(V) reduction occurred in either heat-killed controls or in live samples incubated with chloramphenicol (Fig. 1C). Arsenate reduction to As(III) also occurred in samples with 1 mM As(V), although a lag of 2 days was evident before this was first noticeable (Fig. 1B). A complete reduction of As(V) to As(III) in these samples occurred within 8 days. As was the case at the lower concentrations, no arsenate reduction occurred in heat-killed controls or in live samples that were amended with chloramphenicol (data not shown). Furthermore, we did not note any loss of added (1 mM) As(V) or production of As(III) in aerobically incubated periphyton (data not shown). For the experiments with the estuarine C. sericea materials, As(V) reduction was evident by 3.8 days incubation (Table 1). No activity occurred in autoclaved controls (data not shown).
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FIG. 1. Reduction of As(V) (closed symbols) to As(III) (open symbols) by creek water inoculated with periphyton in anaerobic incubations amended with 10 µM (A) or 1 mM (B) As(V). (C) Controls consisting of samples that were heat sterilized ( and ) or incubated with chloramphenicol ( and ). Symbols represent the means of three samples, and bars indicate ±1 standard deviation. The absence of bars indicates that the error was smaller than the symbols.
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TABLE 1. Changes in As redox chemistry made with anaerobic or aerobic incubation of estuarine C. sericea materialsa
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FIG. 2. Anaerobic incubations of periphyton showing the effect of nitrate ( ) on the anaerobic reduction of 1 mM As(V) () and oxidation of 1 mM As(III) ( ). Incubation conditions were with 1 mM As(V) but without nitrate additions (A), with 1 mM As(V) plus 1 mM nitrate (B), and with 1 mM As(III) plus 1 mM nitrate (C). Symbols represent the means of three samples, and bars indicate ±1 standard deviation. The absence of bars indicates that the error was smaller than the symbols.
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FIG. 3. Reduction of As(V) to As(III) in anaerobic creek water lacking periphyton. Shown are As(V) ( ) and As(III) ( ) in live samples without added electron donor and As(V) () and As(III) ( ) in live samples with lactate. Symbols represent the means of three samples, and bars indicate ±1 standard deviation. The absence of bars indicates that the error was smaller than the symbols.
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1 mM As(III) (7.5%) was evident at 3.8 days, which increased to 34.1% by 5.9 days (Table 1). No such activity was observed in autoclaved controls (data not shown).
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FIG. 4. Oxidation of As(III) ( ) to As(V) () during aerobic incubation of creek water with periphyton (A and C) or without periphyton (B and D). As(III) was added at either 10 µM (A and B) or 1 mM (C and D). Symbols represent the means of three samples, and bars indicate ±1 standard deviation. The absence of bars indicates that the error was smaller than the symbols.
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3 orders of magnitude) occurring in the samples incubated with 5 mM As(V). However, a 2-order-of-magnitude increase in cell numbers was also noted in the samples incubated without added As(V) by the end of the incubation. |
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TABLE 2. MPN estimates of bacterial cell density before and after incubation of periphyton samples amended with 0, 1, or 5 mM As(V)
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TABLE 3. Percentage of [14C]glucose metabolized recovered as 14CO2 and 14CH4 after incubation of periphyton samples amended with As(V)
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As(V) reduction.
In the case of the freshwater Cladophora sp. mat, researchers had previously noted rapid (within 1 h), constitutive (i.e., chloramphenicol-insensitive) denitrification activity as soon as these materials were dark incubated (44). In our present experiments, the response time for As(V) reduction was considerably longer, ranging from within 1 day at 10 µM As(V) (Fig. 1A) to between 3 to 5 days at 1 mM As(V) (Fig. 1C). The fact that As(V) reduction at each of these concentrations was inhibited by chloramphenicol (Fig. 1B) proves that a de novo synthesis of As(V)-reducing enzymes was required, and As(V) reductase was not constitutive in this population as it was for nitrate reductase and N2O reductase. Nonetheless, the response time for observable As(V) reduction was comparable to that which had been found previously in As(V)-amended estuarine sediments (7), and the faster response at the lower concentration was probably just a matter of the greater sensitivity of the analytical methods we employed at the different concentrations (e.g., atomic absorption versus ion chromatography). Clearly, the periphyton microbial community quickly adapts to the presence of As(V) by synthesizing enzymes for its reduction. We also noted that the presence of nitrate effectively blocked the reduction of As(V) (Fig. 2B), suggesting that it acted as a preferred electron acceptor for anaerobic respiration over As(V). This finding is in agreement with results reported for salt marsh sediments by Dowdle et al. (7), who noted that the oxidation of electron donors by nitrate is thermodynamically preferable to that with As(V). However, this interpretation is complicated by the possibility of a rapid co-occurrence of nitrate-linked As(III) oxidation (14, 32) masking the reduction of As(V) (see below).
We were also able to elicit As(V) reduction upon anoxic incubation of just the stream water itself, incubated without periphyton (Fig. 3). This suggests that prokaryotes capable of As(V) reduction are readily transported by fluvial processes downstream, where they can colonize other habitats. This also holds true for the microbes that oxidize As(III) (see below). The fact that promotion of this As(V) reduction required addition of lactate to the water while no such additions were needed for the periphyton incubations proves that the natural algal exudate provided an abundant supply of electron donor. Indeed, the increase in population sizes of DAsR prokaryotes with time in both the As(V)-amended and As(V)-free incubation conditions (Table 1) suggests that they were heterotrophs growing at the expense of an algal exudate electron donor. Because most DAsR prokaryotes are opportunists capable of respiratory growth on a wide diversity of electron acceptors (31), such as the
91 µM nitrate available in the stream water, it is not surprising that their numbers would increase with incubation time under these conditions, even in the absence of As(V).
The question arises as to whether the As(V) reductase activity was entirely attributable to dissimilatory reduction or to microbes that expressed their As resistance enzymes (e.g., ArsC). The fact that we detected a clear presence of DAsR prokaryotes in the MPN cultures (Table 2) and that increasing the As(V) concentration in the periphyton experiments enhanced the production of 14CO2 as the flora shifted from fermentation and methanogenesis to DAsR (Table 3) argues that at least As(V) respirers were a significant component of the microbial flora. If resistance-based As(V) reduction was also an important facet of the As redox reactions we observed, As(III) accumulation should have occurred both under aerobic as well as anaerobic incubation of the periphyton materials (8). The fact that it happened only under the latter condition argues that DAsR was the dominant, but perhaps not the exclusive, process.
As(III) oxidation.
The rate of aerobic As(III) oxidation in samples of periphyton (
0.35 µmol liter1 h1) was approximately threefold faster than that observed with creek water incubated without periphyton (Fig. 4). This implies that the bacterial community responsible for As(III) oxidation was much more abundant in the periphyton mats than in the stream water, and it probably acted as the ultimate seeding source for its fluvial transport downstream. Oxidation of As(III) proceeded without a lag at the micromolar level, a situation similar to that seen for As(V) reduction (Fig. 1A), although the oxidation rate was approximately threefold faster than that observed for As(V) reduction. The rate of oxidation increased nearly 40-fold by increasing the amount of As(III) added to periphyton from
10 µM to 1 mM (Fig. 3C). Presumably, the 1-day lag we observed before oxidation commenced at this concentration was associated with an increase in the population size of the As(III) oxidizers.
It is not entirely clear whether the As(III) oxidation we observed was due to chemoautotrophy or heterotrophy. However, in support of the former process, the fact that we could elicit As(III) oxidation in the stream water without addition of exogenous electron donors suggests that the As(III) was itself acting as an electron donor to fuel a chemoautotrophic type of oxidation. Hence, this observation was exactly the opposite of what we found for anaerobic As(V) reduction with stream water, which required the addition of an exogenous organic electron donor (i.e., lactate) in order to fuel the observed activity.
Freshwater periphyton samples incubated under anaerobic conditions when supplied with nitrate were able to oxidize As(III) to As(V). Approximately 30% of the added As(III) was converted to As(V) before the nitrate was depleted, and subsequently all the As(V) that had been produced was reduced back to As(III) (Fig. 2C). However, there was an initial lag of about 4 days before As(V) accumulation was evident, and nitrate consumption occurred steadily over this initial interval. Therefore, most of the nitrate consumption was linked to the activity of heterotrophic denitrifying bacteria within this periphyton community (44). Because As(III) oxidation occurred only after a substantial lag (Fig. 2C), the initial inhibition of As(V) reduction caused by nitrate (Fig. 2B) was primarily due to its use as a preferred electron acceptor to which it was already adapted, unlike the case with As(V). However, these results present direct evidence for the presence of As(III)-oxidizing, nitrate-reducing bacteria within this freshwater microbial community, a chemoautotrophic microflora that previously has been observed only in Mono Lake, and these bacteria are typified by the facultative chemoautotroph, strain MLHE-1 (14, 32).
These results demonstrate that prokaryotes with the potential to carry out As(V) reduction and both aerobic and anaerobic As(III) oxidation are likely to coexist in periphyton communities and are probably ubiquitous in freshwater aquatic systems that are not originally exposed to arsenic contamination. The positive results with the estuarine C. sericea materials also suggest that this phenomenon is widespread. Because As(V) reduction and As(III) oxidation can be readily elicited in naturally occurring stream periphyton communities that are routinely exposed to nitrate, it is implied that these microbial ecosystems will quickly adapt [e.g., by expressing As-metabolizing enzymes or by increasing the population densities of As(V)-respiring and/or As(III)-oxidizing bacteria] to any anthropogenic inputs of arsenic into the stream arising from point sources upstream, such as mine tailing wastes. We have demonstrated that these activities will be induced rapidly at environmentally realistic concentrations (e.g., micromolar) of polluting As oxyanions. Some previously identified factors that affect arsenic speciation and mobility in streams include reductive processes in the hyporheic zone (26) as well as changes in streambed sorptive affinities caused by photosynthesis-induced pH excursions (9). In addition, we have now shown that periphyton communities themselves should also be examined in any future studies of arsenic speciation and mobility in streams.
We are grateful to J. F. Stolz and J. Santini for their constructive comments on an earlier draft of the manuscript.
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