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Applied and Environmental Microbiology, December 2004, p. 7119-7125, Vol. 70, No. 12
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.12.7119-7125.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Institut für Molekulare Mikrobiologie und Biotechnologie,1 Institut für Organische Chemie, Westfälische Wilhelms-Universität, Münster, Germany2
Received 14 May 2004/ Accepted 18 July 2004
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The yeast Saccharomyces cerevisiae accumulates TAGs and steryl esters as cytosolic lipid particles, which consist of 51% TAGs and 44% steryl esters and contribute up to 70% of the total lipid content (19). Depending on culture conditions, the total lipid content of baker's yeast can vary between 3.5 and 10.7% of the cellular dry weight (11). Steryl esters predominantly consisting of ergosteryl esters are synthesized in S. cerevisiae by two acyl-coenzyme A:sterol acyltransferase (ASAT) isoenzymes encoded by ARE1 and ARE2 (37, 38, 40). Biosynthesis of TAGs in yeast is more complex and proceeds via two independent pathways (reviewed in reference 31). Acyl-coenzyme A (acyl-CoA)-dependent TAG biosynthesis is catalyzed by an acyl-CoA:diacylglycerol acyltransferase (DGAT) belonging to the DGAT2 family encoded by DGA1 (21, 27, 30). In addition, a phospholipid:diacylglycerol acyltransferase encoded by LRO1 synthesizes TAGs in an acyl-CoA-independent reaction by using the sn-2 acyl group of phosphatidylcholine as the acyl donor (6, 22). Dga1p and Lro1p synthesize the majority of TAGs in S. cerevisiae; however, there are highly divergent reports on the contribution of the two pathways to TAG synthesis depending on the wild-type strain background and growth phases (21, 27, 30). Additionally, the ASAT isoenzymes Are1p and Are2p exhibit a low level of DGAT side activity and contribute only slightly to TAG synthesis. However, again there are contradictory data on whether only Are1p (26) or only Are2p (21) or both (27) are responsible for residual TAG production. In a quadruple mutant strain of S. cerevisiae in which DGA1, LRO1, ARE1 and ARE2 were disrupted, no accumulation of TAGs and steryl esters occurred, indicating that these four genes code for the only enzymes catalyzing the final steps in neutral lipid synthesis in yeast (21, 27).
In bacteria, the most abundant class of storage lipids are polyhydroxyalkanoic acids (33); less frequently, TAGs (2) and wax esters (9) have also been detected as storage lipids. Substantial TAG accumulation seems to be widely distributed in species belonging to the actinomycetes group (1, 4, 23), whereas the biosynthesis of wax esters (oxoesters of primary long-chain fatty alcohols and long-chain fatty acids) has been frequently reported for Acinetobacter species (7). Acinetobacter calcoaceticus ADP1 accumulates wax esters and, to a lesser extent, TAGs under growth-limiting conditions and deposits these storage lipids as insoluble inclusions in the cytoplasm (24). Recently, we identified a bifunctional enzyme from this strain which exhibits simultaneously both acyl-CoA:fatty alcohol acyltransferase (wax ester synthase [WS]) and DGAT activity. It was shown that this bifunctional WS/DGAT is the only enzyme catalyzing the final reaction steps in wax ester and is the major enzyme for TAG biosynthesis in A. calcoaceticus ADP1 (12). The WS/DGAT enzyme represents a novel class of acyltransferases that share no homologies to known enzymes involved in storage lipid or phospholipid synthesis in prokaryotic or eukaryotic organisms. WS/DGAT was characterized as a rather unspecific enzyme that accepts a broad range of various-chain-length saturated and unsaturated fatty alcohols and acyl-CoAs as substrates (12). Furthermore, WS/DGAT was shown to be capable of synthesizing wax diesters in vitro as well as in vivo with
,
-alkanediols as substrates and even of using monoacylglycerols as acyl acceptors to some extent (13).
The present study aimed at the heterologous expression of functional WS/DGAT in S. cerevisiae since this attempt had failed for the WS from jojoba (Simmondsia chinensis), which was the first enzyme exhibiting WS activity characterized at a molecular level (18). The influence of WS/DGAT expression on the synthesis of TAGs, steryl esters, and other fatty acid esters in yeast was analyzed.
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TABLE 1. Strains and plasmids used in this study
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Heterologous expression of WS/DGAT in yeast and E. coli.
For expression in yeast, the atfA gene (for acyltransferase; formerly designated the wax/dgat gene [12]) encoding WS/DGAT was amplified from pKS::atfA as the template by tailored PCR by using the oligonucleotides 5'-AAAGGATCCACTATGCGCCCATTACATCCGATT-3' (5' primer with the ATG start codon shown in bold) introducing a BamHI restriction site (underlined) and a Kozak translation initiation sequence (14, 15, 16) and 5'-TTTGTCGACTTAATTGGCTGTTTTAATATCTT-3' (3' primer) introducing a SalI restriction site (underlined). The PCR product was cloned into the BamHI-SalI-restricted vector pESC-URA colinear to the GAL1 promoter inducible by galactose. Recombinant yeast strains were cultivated in synthetic minimal dropout medium lacking uracil and containing 2% (wt/vol) galactose for 24 h at 28°C. Cells were then harvested, washed, and resuspended in 125 mM sodium phosphate buffer (pH 7.4), and crude extracts were obtained by a twofold French press passage. Recombinant E. coli strains were cultivated in LB medium for 6 h at 37°C in the presence of 1 mM isopropyl-ß-D-thiogalactopyranoside (IPTG). Cells were then harvested, washed, resuspended in 125 mM sodium phosphate buffer (pH 7.4), and disrupted by ultrasonification.
Determination of enzyme activities.
WS activity was measured in a total volume of 250 µl of 125 mM sodium phosphate buffer (pH 7.4) containing 3.75 mM 1-hexadecanol, 4.63 mg of bovine serum albumin (BSA) per ml, and 4.72 µM [1 -14C]palmitoyl-CoA (specific activity, 1.961 Bq pmol1). 1-Hexadecanol and BSA were applied as a double-concentrated stock solution emulsified by ultrasonification. The reaction was done with crude extracts of recombinant E. coli or S. cerevisiae strains, and 100 µg of protein was used in each assay. The assay was incubated at 35°C for 30 min, and the reaction was stopped by extraction with 500 µl of chloroform-methanol (1:1, vol/vol). After centrifugation, the chloroform phase was withdrawn, and the extracted lipids were separated by thin-layer chromatography (TLC) as described below. The radiolabeled reaction products on the TLC plate were detected by autoradiography, and radioactivity was measured by scintillation counting by using palmityl palmitate as a nonlabeled reference substance.
For determination of DGAT activity, the same assay was applied; however, 3.75 mM 1,2-dipalmitoylglycerol instead of 1-hexadecanol was used as a substrate, and triolein was used as a reference substance. For determination of ASAT activity, 3.75 mM cholesterol or ergosterol was used as a substrate, and cholesteryl palmitate was used as a reference substance.
Lipid analysis.
TLC was done as described previously (12) by using the solvent system hexane-diethylether-acetic acid (90:7.5:1, vol/vol/vol) for TAG, wax ester, and steryl ester analysis. Triolein, palmityl palmitate, and cholesteryl palmitate were purchased from Sigma-Aldrich Chemie GmbH (Taufkirchen, Germany) and used as reference substances for TAGs, wax esters, and steryl esters, respectively.
Fatty acid analysis of whole cells was done by gas chromatography (GC) as previously described (35). For this, 5 to 7.5 mg of lyophilized cells was subjected for 4 h to methanolysis at 100°C in the presence of 15% (vol/vol) sulfuric acid suspended in methanol. The resulting fatty acid methyl esters were analyzed by GC on an Agilent 6850 GC (Waldbronn, Germany) equipped with a BP21 capillary column (50 m by 0.22 mm; film thickness of 250 nm) (SGE, Darmstadt, Germany) and a flame ionization detector (Agilent Technologies). A 2-µl portion of the organic phase was analyzed after split injection (1:20); hydrogen (constant flow of 0.6 ml min1) was used as a carrier gas. The temperatures of the injector and detector were 250 and 275°C, respectively. The following temperature program was applied: 120°C for 5 min, increase of 3°C min1 to 180°C, increase of 10°C min1 to 220°C, and 220°C for 31 min. Substances were identified by comparison of their retention times with those of standard fatty acid methyl esters.
The putative TAGs, fatty acid ethyl esters, and fatty acid isoamyl esters were purified by preparative TLC. For the direct recovery from the chromatogram, a ChromeXtract (ChromAn, Leipzig, Germany) was used. Lipid structures were determined by electrospray ionization mass spectrometry (ESI-MS) in positive ion mode on a QUATTRO LCZ (Waters-Micromass, Manchester, United Kingdom) with nanospray inlet or by coupled GC/MS.
GC/MS analyses of isolated lipids or total lipid extracts of whole cells dissolved in chloroform were done on a series 6890 GC system equipped with a series 5973 electron ionization mass selective detector (Hewlett Packard, Waldbronn, Germany). A 3-µl portion of the organic phase was analyzed after splitless injection by employing a BP21 capillary column (50 m by 0.22 mm; film thickness of 250 nm) (SGE). Helium (constant flow of 0.6 ml min1) was used as a carrier gas. The temperatures of the injector and detector were 250 and 240°C, respectively. The same temperature program as described for GC analysis was applied. Data were evaluated by using the National Institute of Standards and Technology Mass Spectral Search program (32).
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TABLE 2. WS, DGAT, and ASAT activities in crude extracts of different recombinant S. cerevisiae and E. coli strainsa
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WS/DGAT expression leads to storage lipid accumulation in S. cerevisiae H1246.
Heterologous expression of WS/DGAT from A. calcoaceticus ADP1 not only conferred high DGAT activity to S. cerevisiae H1246 in vitro but also restored TAG biosynthesis in this storage lipid-deficient mutant in vivo, whereas steryl esters or wax esters were not accumulated in detectable amounts as revealed by TLC analysis (Fig. 1). Chemical analysis of TAGs purified from S. cerevisiae H1246 harboring pESC-URA::atfA by ESI-MS revealed a high molecular weight, ranging from m/z = 771.7 [C14:0/C14:0/C16:1 + Na]+ to m/z = 884.0, corresponding to [C16:0/C18:0/C18:1 + Na]+ and [C16:1/C18:0/C18:0 + Na]+ (Fig. 2) and indicating a similar fatty acid composition as revealed for total cellular lipids (Table 3). In addition to TAGs, two other substances were accumulated in S. cerevisiae H1246 harboring pESC-URA::atfA (Fig. 1); these were purified by preparative TLC and identified by means of ESI-MS and GC/MS as a mixture of various long-chain-length fatty acid isoamyl esters (FAIEs) and fatty acid ethyl esters (FAEEs), respectively (data not shown). GC/MS analysis of total lipid extracts from recombinant yeast strains proved that these FAIEs and FAEEs were produced exclusively in the mutant strain S. cerevisiae H1246 harboring pESC-URA::atfA but were absent in the wild-type S. cerevisiae G175 and the mutant S. cerevisiae H1246 harboring only the vector control (Fig. 3). Previous studies had already demonstrated that WS/DGAT is capable of utilizing a broad range of linear, saturated and unsaturated, and medium- and long-chain-length fatty alcohols ranging from C12 to C20 (12). Furthermore, in this study radiometric in vitro assays with crude extract of a recombinant E. coli XL1-Blue strain expressing WS/DGAT revealed that this acyltransferase can also utilize the shorter-chain-length alcohols highly efficiently as substrates, and even the branched-chain alcohol isopentanol (isoamyl alcohol) and the water-soluble alcohol ethanol are accepted as substrates with relatively high specificity (Table 4). Experiments with a purified WS/DGAT obtained by chromatographic enrichment from the soluble protein fraction of a recombinant E. coli strain confirmed this broad range of alcohol utilization (T. Stöveken, R. Kalscheuer, and A. Steinbüchel, unpublished results). Thus, these results clearly indicated that FAIEs and FAEEs were synthesized in S. cerevisiae H1246(pESC-URA::atfA) by WS/DGAT activity. In general, the accumulation of TAGs, FAIEs, and FAEEs in the mutant S. cerevisiae H1246 expressing WS/DGAT was reflected by an increased total fatty acid content, whereas recombinant storage lipid synthesis had no significant influence on fatty acid composition (Table 3).
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FIG. 1. Storage lipid biosynthesis in recombinant S. cerevisiae. Cells were cultivated for 24 h at 28°C in synthetic minimal dropout medium without uracil and with 2% (wt/vol) galactose (samples 1 to 3) or 2% (wt/vol) galactose plus 0.1% (wt/vol) oleic acid (samples 4 to 6) and analyzed by TLC. Lane A, ergosterol; lane B, triolein; lane C, cholesteryl pamitate; lane D, palmityl palmitate; lanes 1 and 4, S. cerevisiae G175(pESC-URA); lanes 2 and 5, S. cerevisiae H1246(pESC-URA); lanes 3 and 6, S. cerevisiae H1246(pESC-URA::atfA). Total lipid extracts obtained from 1.5 mg of lyophilized cells (each) were applied to lanes 1 to 6.
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FIG. 2. ESI-MS analysis of TAGs purified from S. cerevisiae H1246(pESC-URA::atfA). Cells were cultivated for 24 h at 28°C in synthetic minimal dropout medium without uracil and with 2% (wt/vol) galactose. TAGs were purified from total lipid extracts of lyophilized cells by preparative TLC and then subjected to ESI-MS analysis. All pseudomolecular ions correspond to [M + Na]+.
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TABLE 3. Total lipid content and fatty acid composition of recombinant yeast strainsa
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FIG. 3. GC/MS analysis of total lipid extracts from recombinant yeast strains. Cells were cultivated for 24 h at 28°C in synthetic minimal dropout medium without uracil and with 2% (wt/vol) galactose. Total lipid extracts obtained from 2.5 mg of lyophilized cells were applied. The following strains were used: S. cerevisiae H1246(pESC-URA::atfA) (A), S. cerevisiae H1246(pESC-URA) (B), and S. cerevisiae G175(pESC-URA) (C). Identified substances: 1, ethyl palmitate (m/z = 284 [C18H36O2]+); 2, isoamyl myristate (m/z = 298 [C19H38O2]+); 3, ethyl palmitoleate (m/z = 282 [C18H34O2]+); 4, ethyl stearate (m/z = 312 [C20H40O2]+); 5, isoamyl palmitate (m/z = 326 [C21H42O2]+); 6, isoamyl palmitoleate (m/z = 324 [C21H40O2]+); 7, isoamyl stearate (m/z = 354 [C23H46O2]+); 8, isoamyl oleate (m/z = 352 [C23H44O2]+).
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TABLE 4. Substrate specificities of WS/DGAT with various-chain-length alcoholsa
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The expression of WS/DGAT in S. cerevisiae H1246 restored TAG biosynthesis in this storage lipid-deficient mutant strain, which clearly demonstrated again that TAG biosynthesis is undoubtedly one of the inherent functions of this enzyme; DGAT activity, however, was relatively low in comparison to WS activity in A. calcoaceticus ADP1 or recombinant E. coli, resulting in the accumulation of only small amounts of TAGs in the natural host, A. calcoaceticus ADP1 (12).
As expected, WS/DGAT expression did not result in wax ester synthesis and accumulation in spite of conferring a high level of WS activity to S. cerevisiae H1246, since baker's yeast is not capable of providing long-chain fatty alcohols as substrates. However, it is known that fatty alcohols occur as intermediates during the degradation of long-chain alkanes. Wax ester biosynthesis, therefore, might be achieved in one of the many yeasts known to utilize alkanes as carbon sources for growth if WS/DGAT from A. calcoaceticus ADP1 could be functionally expressed (36). This suggests a course for the biotechnological production of wax esters in recombinant yeasts.
This study demonstrated that WS/DGAT from A. calcoaceticus ADP1 can also utilize sterols as substrates and, thus, possesses ASAT activity. However, significant differences in substrate specificities were observed, depending on whether yeast or E. coli was used as the host for heterologous expression. In contrast to results in E. coli, the enzyme recombinantly expressed in S. cerevisiae exhibited a much higher level of DGAT activity but only relatively low activity levels with cholesterol and ergosterol as substrates. Slight variations between bacteria and yeast in protein folding or posttranslational modifications could be a possible explanation for this, although no experimental data are available supporting this assumption. The relatively low ASAT activity in yeast might be the reason that WS/DGAT was unable to restore steryl ester synthesis in S. cerevisiae H1246. Another reason might be a lower intracellular concentration of sterols in the mutant, since it has been shown that down-regulation of sterol biosynthesis occurred in mutants defective in ARE1 and ARE2 (3, 37). However, the sterol content in S. cerevisiae H1246 was not determined in this study.
WS/DGAT exhibits an extremely low specificity regarding the chain length of fatty alcohols that can be utilized as substrates. Long-chain fatty alcohols are among the natural substrates of this enzyme in A. calcoaceticus ADP1, resulting in the synthesis of wax esters. However, medium- and short-chain-length alcohols and even ethanol can also be accepted as substrates, as was shown in this study. This indicates the extraordinary and remarkably broad substrate range of WS/DGAT from A. calcoaceticus ADP1. Fatty alcohols and diacylglycerols are the natural substrates of this enzyme in A. calcoaceticus ADP1; however,
,
-alkanediols and monoacylglycerols (13) as well as sterols and short- and medium-chain-length alcohols have also been identified as suitable substrates, as shown in this study.
Thus, this enzyme represents not merely a bifunctional but rather a multifunctional acyltransferase. The type of lipid that is synthesized by WS/DGAT in vivo strongly depends on the physiological background of the expression host regarding the provision, through its metabolism, of substrates for the enzyme. In addition to CoA-activated fatty acids, fatty alcohols and diacylglycerols are the natural substrates of WS/DGAT in A. calcoaceticus ADP1, resulting in wax ester and TAG production. In contrast, heterologous expression of WS/DGAT in the alkane-degrading bacterium Pseudomonas citronellolis resulted only in recombinant wax ester synthesis (12). Another example is the mutant strain A. calcoaceticus ADP1acr1
Km that produced high-molecular-weight (C48 to C50) wax diesters during cultivation on 1,16-hexadecanediol (13). In S. cerevisiae H1246, however, the metabolism of the yeast cells provided, under the applied cultivation conditions, diacylglycerols, ethanol, and isoamyl alcohol, which is a typical fusel alcohol formed during anaerobic amino acid catabolism in yeast; the compounds were utilized by the recombinantly expressed WS/DGAT as alternative acyl acceptors, resulting in the formation of TAGs, FAIEs, and FAEEs. These results indicate that exploiting the unspecificity of WS/DGAT from A. calcoaceticus ADP1, which allows the use of different prokaryotic and eukaryotic expression hosts, may lead to the biosynthesis of a large variety of lipophilic compounds in vivo. Thus, WS/DGAT has a broad biocatalytic potential for the biotechnological production of novel lipids.
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