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Applied and Environmental Microbiology, March 2004, p. 1328-1335, Vol. 70, No. 3
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.3.1328-1335.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108,1 Department of Plant Pathology, Iowa State University, Ames, Iowa 55001,2 Department of Biological Sciences, University of Waikato, Hamilton, New Zealand3
Received 26 August 2003/ Accepted 3 December 2003
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Wood deterioration in temperate and tropical forest ecosystems and in wood products has been widely studied, and many studies on microbial decay and the mechanisms of wood degradation have been published (11, 12, 27). Decay caused by many common white and brown rot fungi has been well characterized, but other types of decay, such as soft rot by fungi or bacterial degradation of wood, are not well understood (8). Soft rot is caused by fungi taxonomically classified in the phylum Ascomycota, including related asexual taxa, and the resulting decay usually is characterized by chains of cavities that form within the cell walls of wood. These biconical and cylindrical cavities form along the microfibrillar structure of the secondary wall and have a spiral orientation. The attack is localized to the secondary walls, and no degradation of the middle lamella occurs. Decay with microscopic evidence of such cavities is classified as type 1 soft rot (4). Another form of soft rot, type 2, also can occur. This type of attack does not form cavities within the cell wall but causes a progressive degradation of the secondary wall from the cell lumen to the middle lamella. In advanced stages of decay, the entire secondary wall may be completely degraded but the middle lamella between cells is not affected. The term soft rot is used because it was first identified from soft, decayed wood surfaces in contact with excessive moisture (14). Soft rot can occur not only when wood is wet but also in dry environments (5, 7, 13). Conditions that are exceedingly wet or dry apparently inhibit the growth of common and usually more aggressive wood-decaying basidiomycetes, but these adverse conditions do not limit colonization and decay by soft rot fungi. The extreme environmental conditions found in Antarctica have a strong impact on microbial growth and biodegradation. Cold temperatures, short austral summers, elevated salt concentrations, and high UV exposure as well as many other factors strongly influence the type of microorganisms that can survive at the site. The large quantities of wood from Europe used to build the expedition huts provide an unusual opportunity to study microbial decay processes occurring in this unique environment where wood did not previously exist. The origin of the decay microbes also is of interest, since no native higher plants with lignocellulose occur in the Ross Sea region. If wood-destroying fungi were brought into Antarctica with the wood used for the prefabricated huts, or subsequently by visitors, then these fungi would be similar to organisms found where the wood originated or would be common to other regions of the world.
This investigation was done to (i) evaluate wood decay present at the three historic huts in the Ross Sea region, (ii) identify fungi isolated from the decayed wood by using internal transcribed spacer (ITS) sequences of ribosomal DNA (rDNA), (iii) determine where these fungi are located in the historic huts, and (iv) evaluate their decay potential in laboratory studies. Little is known about deterioration of wood in polar regions, and our results provide new information on decay fungi that are present in the woods taken to Antarctica by the early explorers and elucidate the type and extent of degradation that has occurred over the past decades. In addition to advances in polar biology, these results should provide information crucial to conservators for preservation of these important historic sites.
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FIG. 1. Historic huts and artifacts left in Antarctica after expeditions by Robert F. Scott and Ernest Shackleton. (A) Cape Royds hut built in 1908, showing the hut structure and area used for the stables and storage adjacent to the hut. (B) Cape Evans hut built in 1911. The hut structure contains an annex and stable area enclosed within the walls of the hut. A row of historic latrines is in front of the hut. (C) Wooden storage box and Adele penguins nesting at Cape Royds. Many wooden storage boxes and other artifacts are located in the area around the huts. (D) Exterior wall boards from Cape Evans hut. Melt water from the ground is absorbed by the lower boards during the austral summer.
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Sample analyses.
Small wood segments were cut aseptically and placed on culture media to isolate the microorganisms present. Media used for isolations included 1.5% Difco malt extract agar (MEA), a basidiomycete-selective agar medium (24), and acidified MEA containing 2 ml of lactic acid added after autoclaving. Wood samples were prepared for scanning electron microscopy as previously described (9). Samples were frozen and cut in a cryostat freezing microtome, mounted on aluminum stubs, coated with gold, and examined with a Hitachi S3500N variable-pressure scanning electron microscope. Thin sections of wood also were cut and examined using light microscopy to detect soft rot cavities.
Identification of fungi based on rDNA sequences.
Fungal cultures obtained from isolations were transferred and maintained on MEA. The two ITS regions ITS1 and ITS2 and the highly conserved 5.8S gene of the ribosomal repeat region were amplified and sequenced. The protocols for growing cultures, extracting DNA, PCR and automated sequencing, sequencing primers, and the cycling conditions were described previously (20). We sequenced both strands of all fragments to assure fidelity. BLAST searches were done with sequences from each of the fungi obtained from the wood samples, and similar sequences identified by the BLAST searches were used in phylogenetic analyses as previously described (15). The phylogenetic studies also utilized ITS sequences of related taxa from an earlier study (15), many of which were from cultures obtained from the Centraalbureau voor Schimmelcultures (CBS), including Antarctic strains of Cadophora malorum (CBS 257.89 [ITS sequence AY249058], CBS100584 [AY249062], CBS 100591 [AY249063], and CBS 377.77 [AY249064]); C. luteo-olivacea (CBS 141.41 [AY249066]); and C. melinii (CBS 268.33 [AY249072]). The nucleotide sequences were manually aligned, and the aligned DNA sequences were analyzed using PAUP version 4.0b10a (D. L. Swofford, Sinauer Associates, Sunderland, Mass.). After alignment, no gaps were greater than 3 bases, and gaps were treated as a "Newstate." Of 580 aligned characters, including gaps, 125 were eliminated because of ambiguous alignment, 287 were constant, and 47 were parsimony uninformative. Tapesia cinerella was the outgroup taxon in the ITS analysis, and1,000 bootstrap replications were run to determine confidence levels at branching points.
Laboratory decay studies.
Wafers 10 by 10 by 2 mm were cut from sound wood of Betula, Populus, Picea, and Pinus samples, soaked in distilled water for 1 h, and autoclaved. Three sterile wood wafers were placed onto the surface of each actively growing fungal culture 8 to 10 days after inoculation on MEA. Duplicate plates of C. malorum, C. luteo-olivacea, and an undescribed Cadophora species designated as Cadophora sp. strain E were used for each wood type. Petri dishes were sealed with parafilm and incubated at 24°C. Thin sections were aseptically removed from the wafers and observed after 3- and 6-month incubations. Sections were examined using light microscopy for evidence of soft rot cavities within the secondary wall layers. Samples showing soft rot were prepared for scanning electron microscopy and photographed.
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FIG. 2. Scanning electron micrographs of transverse sections of historic wood decayed by soft rot fungi. (A and B) Soft rot cavities in pine wood that was in contact with the ground from the exterior of Cape Evans hut. The secondary walls of tracheids contain numerous cavities of varying size. (C and D) Soft rot cavities in birch wood from a wooden storage box outside of the Cape Evans hut that was in contact with the ground. Advanced decay is present and large holes, formed by many secondary wall cavities that have coalesced together, are seen in fiber cell walls. Bar, 50 µm (A and C) or 25 µm (B and D).
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TABLE 1. Isolate numbers, collection information, and DNA sequence accession numbers for representative isolates of Cadophora species from Antarctica
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FIG. 3. One of 12 most parsimonious trees of Cadophora species and related discomycetes based on the ITS1, 5.8S, and ITS2 regions of rDNA. The tree is rooted to T. cinerella. Bootstrap values from 1,000 replications that were greater than 50% are indicated above or below the branches. Isolate numbers or accession numbers from Antarctic isolates are in bold and have asterisks. Consistency index = 0.7335; retention index = 0.8121; rescaled consistency index = 0.5957.
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FIG. 4. Schematic drawing of Cape Evans hut showing locations () where Cadophora species were isolated. Six isolates were obtained from wooden artifacts around the hut, and the direction where these woods were located is indicated by an arrow. Although cultures of Cadophora were obtained from all of these locations, not all of the samples had soft rot.
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Wood wafers of Betula and Populus inoculated in the laboratory with C. malorum, C. luteo-olivacea or Cadophora sp. strain E had a type 1 soft rot after 12 months of incubation (Fig. 5). Numerous soft rot cavities were present within secondary walls of wood fiber cells. These cavities often coalesced, resulting in large voids within the cell walls (Fig. 5C and D). In some cells, the entire S2 layer of the secondary wall was degraded, leaving only the S3 and middle lamella regions. Wafers of Picea and Pinus inoculated in the laboratory and examined after 12 months were stained with dark fungal growth, but no soft rot was found.
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FIG. 5. Scanning electron micrographs of transverse sections from wood decayed in the laboratory with isolates of Cadophora from Antarctica. (A) Soft rot cavities in wood from Betula inoculated with Cadophora sp. strain E. Fibers between vessel elements are riddled with holes caused by the soft rot fungus. (B) Soft rot in birch wood inoculated with C. malorum. Cavities within the secondary walls of fibers are evident, with hyphae present in cell lumina and within the cavities created by the soft rot fungus. (C and D) Extensive soft rot in Populus wood inoculated with C. luteo-olivacea. Large cavities have formed in the fiber cell walls, and large numbers of hyphae are present. In many cells, the entire S2 region of the secondary wall has been degraded. A residual S3 layer adjacent to cell lumina and the middle lamella between cells are left. Wood cells with advanced soft rot have lost most of their original cell wall strength. Bar, 50 µm (A and C) or 25 µm (B and D).
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Although soft rot has occurred, it has not caused extensive damage to the historic structures. The oldest hut, Discovery, built in 1901, had no evidence of soft rot, and only one isolate of Cadophora was found at the site. Discovery hut was built with a wide veranda around three sides, and the ground around the hut is well drained. The veranda reduces the amount of moisture near the hut and shades the ground so that ground ice melts little if at all. These conditions apparently have helped to limit the duration of suitable conditions for fungal growth in wood in contact with the ground.
Soft rot fungi may grow very slowly and cause negligible decay in the absence of exogenous nutrients (25). The C/N ratio in wood is very high, and the lack of external sources of nitrogen can limit wood decay. Soft rot fungi have a remarkable ability to translocate nitrogen (13). For example, in an ancient wooden tomb of the legendary King Midas, soft rot fungi utilized the nitrogen from the King's body to allow decay to occur throughout the wooden tomb structure for hundreds of years (13). In the historic woods found in Antarctica, nutrients also are likely to influence the rate and extent of soft rot decay. The large number of soft rot fungi at Cape Royds and Cape Evans may be due to the abundance of nutrients there. A large penguin colony exists at Cape Royds, and penguins frequent the historic site. Penguin guano and feathers are always present around the hut. Another source of nutrients at these huts is from stores of food supplies at these sites. The deterioration of wooden storage crates and metal cans has resulted in them spilling their contents into the environment around the huts. Although no penguin colony exists at Cape Evans, penguins and skuas are common at the site. Cape Evans also has had nutrient input from historic sources, such as ponies and dogs used by the explorers and from latrines located adjacent to the hut. These sources, as well as modern deposits of skua and penguin guano, could provide the nutrients needed to facilitate soft rot fungal activity in the historic woods. In contrast, large quantities of food stores were not left around the Discovery hut, and there is no evidence of latrines next to the hut. The lack of penguins visiting this hut area, minimal levels of historic sources of nutrient deposits at this site, and reduced amounts of melt water adjacent to the hut due to its unique hut construction and good drainage at the site likely contributed to the near absence of soft rot fungi at Discovery hut.
In the wood wafer decay studies, no additional nutrients were added to the wood, yet the three species of Cadophora tested caused decay in Betula or Populus wood blocks. The extensive decay that occurred in the inoculated wood (Fig. 5) demonstrates the potential of Cadophora species to cause very serious degradation if conditions are favorable for decay. Soft rot was not found in the Picea or Pinus wood wafers. The presence of soft rot in conifer wood in contact with the ground at the Cape Evans and Cape Royds huts indicates that these fungi are able to attack these types of wood in the Antarctic environment. Laboratory conditions used for our analyses may not have been suitable for decay to occur in the conifer woods, since colonization occurred but no soft rot was evident. Increased incubation time and addition of nutrients also could have stimulated soft rot attack in the laboratory studies (25, 26). Additional studies are warranted to determine the optimal conditions for soft rot development in conifer wood and to determine the effect of other factors, such as exogenous nutrients, moisture, salts, and temperature, on fungal growth and degradation.
Recent phylogenetic analyses (15) showed that members of the genus Cadophora are anamorphs of Helotiales (discomycetes) and are distinct from the morphologically similar anamorph genus Phialophora in the Chaetothyriales. Morphologically, species of Cadophora are not easily differentiated from other species of Cadophora or from Phialophora species, but rDNA sequence analyses clearly separate these fungi. Since these fungi differ little in morphology, some misidentifications of Phialophora-like isolates from Antarctica probably have been made in the past. For example, two isolates (CBS 100584 [AY249062] and CBS 377.77 [AY249064]) from soil in Antarctica are listed as C. fastigiata but have the same ITS sequence as isolates of C. malorum. In addition, we found at least three unknown Cadophora species among our isolates, including the only isolate obtained from the Discovery hut, Cadophora sp. strain H. A second unknown species (NH 1-2) was obtained from McCraw's hut at New Harbor, and a third, Cadophora sp. strain E, was obtained from the Cape Evans hut. Additional sampling at the Discovery hut and at other locations in Antarctica is needed to obtain accurate information on the distribution of these species and their role as soft rot fungi or as decomposers of other organic materials in the Antarctic environment.
Cadophora species have been reported previously in Antarctica on mosses (3, 22) and in soils (21), including oil-contaminated soils (1). The occurrence of Cadophora spp. from Victoria Land to the Antarctic Shetland Islands demonstrates their wide distribution on the Antarctic continent. Results presented in this paper indicate these fungi are very common in the Ross Sea region in wood from the historic expedition huts. Their prevalence at the Cape Evans hut, the Cape Royds hut, and in the hut used by McCraw in 1959 suggests that Cadophora species are well adapted to the Antarctic environment and effectively colonize resources, such as wood. Extensive soft rot decay in wood at the McCraw hut after 44 years of exposure to the Antarctic environment indicates that some sites may be more conducive to soft rot decay than others. The hut at New Harbor is located near a stream channel that fills with melt water, and the gravel near the hut is wet for many weeks each summer. Although the expedition huts are 90 to 100 years old, soft rot is less extensive there than at the McCraw hut, indicating the conditions for decay at these locations on Ross Island may not be as conducive for decay. Nonetheless, Cadophora species have extensively colonized the historic woods at Cape Evans and Cape Royds, and since they are well established they could pose serious threats to the huts if conditions for decay were to become more favorable.
The soft rot fungi found in the historic huts probably were not brought to Antarctica by the early explorers. Cadophora species occur in temperate regions of the world, but they are not common wood decay fungi and are not frequently found in wood used for buildings. The great diversity of Cadophora species found in the historic woods, including several undescribed species, and their presence in soils and on dead moss thalli strongly suggest that these fungi are endemic to Antarctica. Additional investigations are needed to provide a more complete understanding of the biology of these microbes in Antarctica and to elucidate their role in the polar ecosystem. Studies of Cadophora and their ability to degrade wood also are needed as part of long-term conservation plans to preserve the huts and minimize conditions under which soft rot occurs.
This research is based upon work supported by National Science Foundation grant 9909271.
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