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Applied and Environmental Microbiology, July 2004, p. 3807-3813, Vol. 70, No. 7
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.7.3807-3813.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
MOE Laboratory of Protein Science, Department of Biological Sciences and Biotechnology, Tsinghua University, Beijing 100084,1 School of Life Science, Shandong University, Jinan 250100,2 Multidisciplinary Research Center, Shantou University, Guangdong 515063, China3
Received 13 January 2004/ Accepted 27 February 2004
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3HA monomers can be prepared either by chemical synthesis or by PHA degradation. Recently, 3HA monomers, including 3-hydroxybutyric acid (8) and 3-hydroxydecanoic acid (3HD) (31), were reported to be produced by recombinant E. coli harboring either phbA, encoding ß-ketothiolase, and phbB, encoding acetoacetyl-coenzyme A (CoA) reductase, or phaG, encoding (R)-3-hydroxydecanoyl-acyl carrier protein (3HD-ACP)-CoA transacylase (PhaG), respectively. PhaG was found to link fatty acid de novo biosynthesis to PHA production by converting 3HD-ACP to (R)-3-hydroxydecanoyl-CoA (3HD-CoA) (24). However, how 3HD-CoA is converted to its corresponding free-acid derivative is unclear.
Fatty acyl thioesterase activity in E. coli extracts was first noted by Kass et al. (13). In subsequent experiments, two separable thioesterases were confirmed (1, 2). Thioesterase I, encoded by the tesA gene, was found to be specific for C12 to C18 acyl-CoA esters, but it was inactive for C6 to C10 acyl-CoA esters or 3-hydroxyacyl-CoA esters (20). Klinke et al. reported that cytosolic thioesterase I mediated acyl-ACP intermediates from the fatty acid de novo biosynthesis pathway to fatty acid ß-oxidation in E. coli (14), although native thioesterase I was mainly observed as a periplasmic enzyme (6). On the other hand, thioesterase II, an enzyme encoded by the tesB gene that is composed of four identical subunits (3), has broader substrate specificity. Thioesterase II was reported to cleave C6 to C18 acyl-CoA esters, as well as 3-hydroxyacyl-CoA esters (3, 27), while it did not function as a chain-terminating enzyme in fatty acid synthesis (21). Thus, the exact physiological function of thioesterase II in vivo is not known.
In this study, thioesterase II was coexpressed with PhaG to clarify the physiological role of thioesterase II.
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TABLE 1. Strains and plasmids used in this study
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FIG. 1. Scheme of plasmids used in this study. (a) The tesB gene from the E. coli JM105 genome was amplified by PCR with primers P1 and P3 and inserted into the pGEM-T vector to yield the starting plasmid, pLZZH01. The chloramphenicol resistance cassette from pBBR1MCS replaced the BstBI/BamHI fragment of tesB in pLZZH01, leading to the plasmid pLZZH11 (step 1). The SacII (filled in)-SacI fragment from pLZZH11 was inserted into the HincII/SacI sites of the temperature-sensitive vector pTH19ks1, resulting in pLZZH12 (step 2), which was used to construct the tesB knockout mutant E. coli strain. The HincII/ClaI fragment of pLZZH01, containing the tesB gene, was introduced into the corresponding sites of the vector pBBR1MCS-2 to yield pLZZH09 (step 3). BstBI/BamHI double-digested pLZZH01 was sequentially blunt ended by T4 polymerase and ligated to obtain the competitive plasmid pLZZH08 for the tesB transcriptional assay (step 4). (b) pLZZGPp was digested with PmlI and SnaBI, followed by ligation, resulting in pLZZH10, used for the transcriptional assay for phaG. tesB encodes thioesterase II; tesB', the BstBI/BamHI fragment of tesB, was deleted; phaG encodes 3HD-ACP-CoA transacylase; phaG', the SnaBI/PmlI fragment of phaG, was deleted. Ap(r), Kn(r), and Cm(r), ampicillin, kanamycin, and chloramphenicol resistance genes, respectively. B, BamHI; Bs, BstBI; C, ClaI; H, HincII; P, PmlI; SI, SacI; SII, SacII; Sn, SnaBI.
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TABLE 2. Primers used in this studya
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Flask fermentation conditions.
Recombinant E. coli strains were incubated at 37°C and 200 rpm for 48 h on a rotary shaker (series 25 D; NBS, New Brunswick, N.J.) in 100 ml of Luria-Bertani medium containing 100 mg of ampicillin/liter and 50 mg of kanamycin/liter. IPTG (isopropyl-ß-D-thiogalactopyranoside;1 mmol/liter), fructose (20 g/liter), and triclosan (0.1 mg/liter) were added to the culture after 9, 12, and 24 h, respectively. Just before the addition of fructose, 10 ml of broth from each culture was taken and examined for thioesterase II activity and transcriptional intensity. The cellular dry weight (CDW) and extracellular 3HD were analyzed as described below.
PHA synthase (encoded by phaC)-negative mutant P. putida GPp104 strains were inoculated in mineral salts medium containing 1 mmol of IPTG/liter and 20 g of glucose/liter at 30°C and 200 rpm for 48 h. If necessary, 50 mg of kanamycin/liter was added to the broth at the beginning of inoculation. At 12 h, 10 ml of broth from each culture was sampled for transcriptional assay of phaG.
3HD analysis.
Liquid cultures were centrifuged at 10,000 x g for 15 min. The cells were washed twice and dried at 80°C for 8 h to determine the CDW. An aliquot of the supernatant (5 ml) was lyophilized for 48 h. Lyophilized materials were subjected to methanolysis and assayed with a gas chromatograph (18). This analysis was performed by injecting 1 µl of sample into a Hewlett-Packard model 6890 (Plus) series gas chromatograph system equipped with a 0.25-µm-diameter HP-INNOWax capillary column 30 m in length. The standard was a commercial product (H-3648; Sigma). The gas chromatography-mass spectroscopy (GC-MS) (AntoSystem XL GC-TurboMass; Perkin-Elmer, Norwalk, Conn.) analysis was performed using the sample for GC analysis described above. 3HD production ability was presented as the ratio of 3HD to CDW.
Thioesterase assay.
Cells sampled as described above were washed twice with 0.1 mol of Tris-hydrochloride buffer (pH 8.0)/liter and suspended in the same buffer, followed by homogenization on ice. Crude extracts were centrifuged at 1,000 x g and 4°C for 5 min. The resulting supernatants were monitored for thioesterase activity. The total-protein concentration was determined by the method of Bradford (5) using Coomassie Plus Protein Assay Reagent (Pierce) with a UV-visible-light spectrophotometer (Ultraspec 3300; Biochrom) and adjusted to 10 µg/ml. The assay for thioesterase II contained (per milliliter) 0.1 mmol Tris-hydrochloride buffer (pH 8.0), 100 nmol 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB; Sigma), 20 nmol decanoyl-CoA (Sigma), and 100 µl of crude cell extract. Reduction of DTNB by CoA liberated in the thioesterase reaction was measured at 412 nm (22). The initial rates were measured using a recording spectrophotometer (Specord 200; Analytik Jena AG, Jena, Germany) (22). A unit of enzyme activity was defined as the amount of the enzyme catalyzing cleavage of 1 µmol of decanoyl-CoA per min under the above-mentioned conditions. The molar extinction coefficient of reduced DTNB was taken as 13,600 (22).
RNA analysis.
Total RNA was isolated and purified using commercial kits (Shenergy Biocolor Biological Science and Technology Co., Shanghai, China). Purified total RNA was quantified using an Ultraspec 3300 UV-visible-light spectrophotometer. Reverse transcriptase (RT) PCR was performed with a cDNA Cycle kit (Invitrogen). The transcriptional analysis procedure was as described by Zhang and Cronan (30) employing Ex Taq DNA polymerase (TakaRa; Dalian, China). Briefly, 2 µg of isolated total RNA was reverse transcribed into cDNA in a 10-µl reaction mixture. Plasmid pLZZH08 or pLZZH10 was used as the competitive DNA and was carefully diluted in a series of concentrations that were determined using an Ultraspec 3300 UV-visible-light spectrophotometer. The reverse-transcriptase reaction product (1 µl) and different concentrations of competitive DNA (as specified in the figure legends [see Fig. 5 and 6]) were added to a 20-µl PCR mixture. The products were separated on a 2.5% agarose gel and stained with ethidium bromide, and the amounts of the products were estimated by video densitometry analysis using LabWorks Analysis software (UVP). The ratios of the fluorescence intensities of the PCR products of the competitive DNA to those of the RT-PCR products were plotted as a function of the concentration of the competitive DNA (30).
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FIG. 5. Semiquantitative RT-PCR assay of tesB transcription in both the phaG-negative strain E. coli(pBluescript SK(), pBBR1MCS-2) (A) and the phaG-containing strain E. coli JM105(pLZZGPp, pBBR1MCS-2) (B). The strains were sampled from the flask cultures (see the text for details). (a) RT-PCR and PCR were performed by employing primers P4 and P5. Plasmid pLZZH08, harboring a DNA fragment, tesB' (tesB without a central BstBI/BamHI fragment), was used as competitive DNA. (b and c) Competitive DNA (2.0 x 104, 1.6 x 104, 1.2 x 104, 0.8 x 104, 0.4 x 104, 0.2 x 104, and 0 ng) was added to lanes from left to right, respectively, in gels A and B. Lane M is a GeneRuler 50-bp DNA ladder (MBI). The fluorescence intensities of the bands on the agarose gel in each lane were quantified by densitometry following ethidium bromide staining. The ratio of the intensity of the PCR product (415 bp) of competitive DNA to that of the RT-PCR product (611 bp) was calculated for each reaction, and these ratios were plotted as a function of the competitive DNA concentration (c). The data are shown as means of six experiments. The error bars for SEM are not visible because they are smaller than the symbol size.
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FIG. 6. Semiquantitative RT-PCR assay of phaG transcription in the tesB-negative strain P. putida GPp104(pBBR1MCS-2) (A) and the tesB-containing strain P. putida GPp104(pLZZH09) (B). The strains were sampled from the flask cultures (described in Materials and Methods). (a) RT-PCR and PCR were performed by employing primers P6 and P7. Plasmid pLZZH10, harboring a DNA fragment, phaG' (phaG without a central SnaBI/PmlI fragment), was used as competitive DNA. (b and c) Competitive DNA (1.0 x 104, 0.8 x 104, 0.6 x 104, 0.4 x 104, 0.2 x 104, and 0 ng) was added to lanes from left to right, respectively, in gels A and B. Lane M is a GeneRuler 50-bp DNA ladder (MBI). The fluorescence intensities of the bands on the agarose gel in each lane were quantified by densitometry following ethidium bromide staining. The ratio of the intensity of the PCR product (496 bp) of competitive DNA to that of the RT-PCR product (645 bp) was calculated for each reaction, and these ratios were plotted as a function of the competitive DNA concentration (c). The data are shown as means of five experiments. The error bars for SEM are not visible because they are smaller than the symbol size.
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FIG. 2. Scheme of construction (a) and identification (b) of E. coli CH01. (a) The derivative of the temperature-sensitive vector pTh19ks1, pLZZH12, harboring a DNA fragment in which the chloramphenicol resistance cassette from pBBR1MCS replaced the BstBI/BamHI fragment of tesB, was introduced into E. coli JM105. Due to homologous recombination, a tesB knockout mutant strain, E. coli CH01, was obtained. P1 anneals with the 5' end of tesB, P2 anneals with the chloramphenicol resistance gene (Cmr), and P3 anneals with the 3' end of tesB. (b) Lanes 1 and 4, DL2000 DNA marker (TaKaRa); lanes 2 and 3, PCR analysis of E. coli CH01 and E. coli JM105 with primers P1 and P3 (the expected product sizes determined from sequence data were 1,926 and 937 bp, respectively); lanes 5 and 6, PCR analysis of E. coli CH01 with primers P2 and P3 (lane5; the expected product size was 1,348 bp) and of the control strain, E. coli JM105, with the same primers (lane 6; no product was expected).
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3% of the CDW, significantly lower than that of the tesB-positive strain E. coli JM105(pLZZGPp, pBBR1MCS-2), which was
30% of the CDW. Introduction of the tesB gene in E. coli CH01 [as E. coli CH01(pLZZGPp, pLZZH09)] returned 3HD production to the same level as that of the tesB-positive control strain [as E. coli JM105(pLZZGPp, pLZZH09)] (Table 3). The results revealed that thioesterase II plays an important role in converting 3HD-CoA to free 3HD in E. coli.
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FIG. 3. Identification of extracellular 3-hydroxydecanoic acid. Supernantant (5 ml) was lyophilized for 48 h. The lyophilized material was subjected to methanolysis, and a GC-MS assay was performed (AntoSystem XL GC-TurboMass).
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TABLE 3. Extracellular accumulation of 3HD by various recombinant E. coli strainsa
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FIG. 4. Enzyme activity assay of thioesterase II enzymes from recombinant E. coli strains. The mean of three independent samples of E. coli JM105(pBluescript SK(), pBBR1MCS-2) was 15.8 mU/mg of protein, which was defined as 100%. Bars: A, E. coli JM105(pBluescript SK(), pBBR1MCS-2); B, E. coli JM105(pBluescript SK(), pLZZH09); C, E. coli JM105(pLZZGPp, pBBR1MCS-2); D, E. coli JM105(pLZZGPp, pLZZH09); E, E. coli CH01(pBluescript SK(), pBBR1MCS-2); F, E. coli CH01(pLZZGPp, pBBR1MCS-2); G, E. coli CH01(pLZZGPp, pLZZH09). E. coli CH01 is the isogenic tesB-negative mutant of E. coli JM105. Plasmid pLZZGPp is a derivative of the vector pBluescript SK() harboring phaG under the control of the lac promoter, while pLZZH09 is a derivative of vector pBBR1MCS-2 harboring tesB under the control of the lac promoter. The data are shown as means ± SEM (n = 3).
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Heterologous expression of tesB in Pseudomonas putida GPp104.
Heterologous expression of tesB in P. putida GPp104 led to the extracellular accumulation of 3HD, while no 3HD was detected in the growth media inoculated with P. putida GPp104 and recombinant P. putida GPp104 harboring only the vector pBBR1MCS-2 (Table 4). On the other hand, pLZZH10, the derivative plasmid of pLZZGPp (Fig. 1b), was used as the competitive template for semiquantitative RT-PCR assay of phaG with the primer pair P6 and P7 (Fig. 6a). The PCR product of pLZZH10 was 496 bp, while the RT-PCR product was 645 bp (Fig. 6b). Interestingly, heterologous expression of tesB in P. putida GPp104 led to a significant increase in phaG transcription (Fig. 6c).
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TABLE 4. Extracellular accumulation of 3HD by recombinant P. putida GPp104 strains from glucosea
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In this study, for the first time, tesB of E. coli was expressed in vivo together with phaG in order to understand how the two genes affect 3HD biosynthesis. The engineered pathway used carbon sources from glycolysis, followed by fatty acid de novo biosynthesis. Next, PhaG converted 3HD-ACP to 3HD-CoA (24). Finally, the thioester of 3HD-CoA was cleaved to yield 3HD (Fig. 7). As a cytosolic tetrameric protein (3), thioesterase II plays an important role in this pathway, as demonstrated by three facts: (i) in the presence of PhaG, overexpression of tesB in E. coli led to increased 3HD synthesis; (ii) in contrast to a tesB-positive strain, 3HD production was lowered significantly in a tesB-negative E. coli strain harboring phaG; and (iii) the reintroduction of tesB restored 3HD production ability (Table 3).
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FIG. 7. Schematic illustration of biosynthesis pathway for 3HD and PHA from unrelated carbon sources, such as glucose and fructose. 3HD-ACP-CoA transacylase (PhaG) is encoded by the gene phaG from P. putida, while thioesterase II is encoded by the gene tesB from E. coli. This engineered pathway began with glycolysis, followed by fatty acid de novo biosynthesis. Under the catalysis of the transacylase, 3HD-ACP is converted to 3HD-CoA. 3HD-CoA is either cleaved by thioesterase II to yield 3HD or polymerized by PHA synthase to yield PHA. In native PHA synthase-negative P. putida GPp104, 3HD-CoA may be converted to other intermediates or back to 3HD-ACP, due to the absence of thioesterase II.
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Surprisingly, two thioesterases whose activities are similar to those of E. coli were found in Rhodopseudomonas sphaeroides (4). Similar thioesterase complementation occurring in dissimilar bacteria suggests that these enzymes play important roles (22). However, the physiological function of thioesterase II was not fully understood, as no obvious physiological or biochemical defect was observed in E. coli with tesB overexpression or deletion (21, 22). However, the high specificity for acyl-CoA substrates suggests that one role of this enzyme could be to prevent the accumulation of intracellular acyl-CoA (27), although the normal cellular enzyme level is generally sufficient to preclude acyl-CoA accumulation (12). In the present study, by employing a direct 3HD biosynthesis pathway for high-level accumulation of intracellular 3HD-CoA, thioesterase II was indeed found to play a role in preventing the accumulation of intracellular acyl-CoA and thus in maintaining an appropriate acyl-CoA pool in vivo.
The phaG gene of P. putida and the phaC-negative strain P. putida GPp104 were kindly provided by A. Steinbüchel of the Westfälische Wilhelms-Universität Münster, Münster, Germany, and B. Witholt of the University of Groningen, Groningen, The Netherlands, respectively. The temperature-sensitive vector pTH19ks1 was provided by the Cloning Vector Collection, Department of Microbial Genetics, National Institute of Genetics, Mishima, Japan. We thank Peiyu Liao and Powen Yan for their assistance in the early stages of this project. We also gratefully acknowledge the constructive comments and warmhearted help of Cheng-Dui Yang in GC-MS analysis and Zheng Wang in the thioesterase II activity assay.
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