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Applied and Environmental Microbiology, July 2004, p. 4040-4047, Vol. 70, No. 7
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.7.4040-4047.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Biotechnology Research Institute, National Research Council of Canada, Montreal, Quebec H4P 2R2, Canada,1 U.S. Air Force Research Laboratory, Tyndall Air Force Base, Florida 324032
Received 16 January 2004/ Accepted 6 April 2004
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FIG. 1. Molecular structure of the explosives CL-20, RDX, HMX, and TNT.
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Salicylate 1-monooxygenase (EC 1.14.13.1), a flavin adenine dinucleotide (FAD)-containing enzyme from Pseudomonas sp. strain ATCC 29352, is capable of catalyzing a variety of biochemical reactions (19). The physiological role of salicylate 1-monooxygenase is to biotransform salicylate to catechol (20). However, it demonstrates activity against many other substrates such as o-halogenophenol and o-nitrophenol (29), benzoates, and variety of other compounds (19). We hypothesized that CL-20, being an oxidized chemical, might act as a substrate of salicylate 1-monooxygenase by accepting an electron(s).
In the present study, we used salicylate 1-monooxygenase as a model flavoenzyme in experiments to determine the initial enzymatic reaction(s) involved in the biodegradation of CL-20 and to gain insights into how flavoenzyme-producing bacteria biotransform CL-20. In liquid chromatography/mass spectrometry (LC/MS) studies, uniformly ring-labeled [15N]CL-20 and H218O were used to identify the intermediate(s) produced during the course of reaction. Additionally, we studied the involvement of the FAD-site of salicylate 1-monooxygenase in CL-20 biotransformation.
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-form and 99.3% purity) and uniformly ring-labeled [15N]CL-20 (
-form and 90.0% purity) were provided by ATK Thiokol Propulsion, Brigham City, Utah. NADH, diphenyliodonium chloride (DPI), and flavin adenine dinucleotide (FAD) were purchased from Sigma Chemicals, Oakville, Ontario, Canada. Nitrous oxide (N2O) was purchased from Scott Specialty Gases, Sarnia, Ontario, Canada. H218O (95% normalized 18O atoms) was purchased from Aldrich Chem. Co., Milwaukee, Wis. All other chemicals were of the highest purity grade.
Enzyme preparation and modification.
Salicylate 1-monooxygenase from Pseudomonas sp. strain ATCC 29352 was purchased as a lyophilized powder (protein approximately 45% by the Biuret method) from Sigma Chemicals. Native enzyme activity against salicylate was determined as specified by the manufacturer. The enzyme was washed with phosphate buffer (pH 7.0) at 4°C using Biomax-5K membrane centrifuge filter units (Sigma Chemicals) to remove preservatives and then resuspended in the same buffer. The protein content was determined by using the bicinchoninic acid protein assay kit from Pierce Chemical Co., Rockford, Ill.
Apoenzyme (deflavo form) was prepared by removing FAD from salicylate 1-monooxygenase by using a previously reported method (32). Reconstitution was carried out by incubating the apoenzyme with 100 µM FAD in 50 mM potassium phosphate buffer (pH 7.0) for 1 h at 4°C. The unbound FAD was removed by washing the enzyme with the same buffer, using Biomax-5K membrane centrifuge filter units.
Biotransformation assays.
Enzyme-catalyzed biotransformation assays were performed under aerobic as well as anaerobic conditions by using 6-ml glass vials. Anaerobic conditions were created by purging the reaction mixture with argon gas for 20 min and by replacing the headspace air with argon in sealed vials. Each assay vial contained, in 1 ml of assay mixture, CL-20 or uniformly ring-labeled [15N]CL-20 (25 µM or 11 mg liter1), NADH (100 µM), enzyme preparation (250 µg), and potassium phosphate buffer (50 mM; pH 7.0). Higher CL-20 concentrations than its aqueous solubility of 3.6 mg liter1 (11) were used to allow detection and quantification of the intermediate(s). Reactions were performed at 30°C. Three different controls were prepared by omitting enzyme, CL-20, or NADH from the assay mixture. Boiled enzyme was also used as a negative control. NADH oxidation was measured spectrophotometrically at 340 nm as described previously (2). Samples from the liquid and gas phases in the vials were analyzed for residual CL-20 and biotransformed products.
To determine the residual CL-20 concentrations during biotransformation studies, the reaction was performed with multiple identical vials. At each time point, the total CL-20 content in one reaction vial was solubilized in 50% aqueous acetonitrile and analyzed by high-pressure liquid chromatography (HPLC) (see below). The CL-20 biotransformation activity of salicylate 1-monooxygenase was expressed as nanomoles per minute per milligram of protein unless otherwise stated.
To demonstrate the effect of enzyme concentration on CL-20 biotransformation, a progress curve was generated for reactions under anaerobic conditions by incubating salicylate 1-monooxygenase at increasing concentrations (0.25 to 2.0 mg/ml) with 45 µM CL-20 and 100 µM NADH. The reactions conditions were the same as these described above.
To determine the incorporation of water into the CL-20 metabolite(s), H218O was mixed with 100 mM potassium phosphate buffer (pH 7.0) at a ratio of 8:2. All other reaction ingredients and conditions were the same as those described above for the biotransformation of CL-20.
Enzyme inhibition studies.
Inhibition with DPI, an inhibitor of flavoenzymes that acts by forming a flavin-phenyl adduct (6), was assessed by incubating salicylate 1-monooxygenase (1 mg) with DPI (0 to 0.5 mM) at room temperature for 15 to 20 min. After incubation, CL-20 biotransformation activities of the enzyme were determined by monitoring the residual CL-20 as described above.
Analytical procedures.
CL-20 and its intermediates were detected and analyzed with a Bruker bench top ion trap mass detector attached to a Hewlett-Packard 1100 series HPLC system equipped with a photodiode array detector. The samples were injected into a 5-µm-pore-size Zorbax SB-C18 capillary column (0.5-mm internal diameter by 150 mm; Agilent) at 25°C. The solvent system was an acetonitrile/water gradient (30 to 70% [vol/vol]) at a flow rate of 15 µl/min. For mass analysis, ionization was performed in the negative electrospray ionization mode (ES), producing mainly deprotonated molecular mass ions [M H]. The mass range was scanned from 40 to 550 Da.
The CL-20 concentration was quantified with an HPLC apparatus connected to a photodiode array detector (
230) as described previously (4). Nitrous oxide (N2O) and formaldehyde (HCHO) were analyzed as previously reported (2, 3, 18). Ammonium cations were analyzed by an SP 8100 HPLC system equipped with a Waters 431 conductivity detector and a Hamilton PRP-X200 (250 mm by 4.6 mm by 10 µm) analytical column as described previously (17). Formic acid (HCOOH) and nitrite (NO2) were quantified using a Waters HPLC system equipped with a conductivity detector as reported previously (4).
15N-labeled N2O (i.e., 15N14NO) was analyzed by a 6890 gas chromatograph (Hewlett-Packard Mississauga, Ontario, Canada) coupled with a 5973 quadrupole mass spectrometer. A GS-Gas Pro capillary column (30 m by 0.32 mm) (J & W Scientific, Folsom, Calif.) was used under splitless conditions. The injector and mass spectrometer interface (MSD) were maintained at 150 and 250°C, respectively. The column was set at 25°C for 1.5 min and then raised to 10°C at a rate of 10°C/min, which was held for 5 min. The MSD was used in the scan mode (electron impact) between 10 and 50 Da. The total run time was 8 min, and 15N14NO was detected at a retention time of 5.5 min with a molecular mass of 45 Da.
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FIG. 2. Progress curve demonstrating CL-20 biotransformation as a function of salicylate 1-monooxygenase concentration. The linear-regression curve has a gradient of 15.42 and an r2 of 0.99. Data are means of results from triplicate experiments, and error bars indicate standard errors. Some error bars are not visible due to their small size.
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Molecular oxygen (O2) inhibits CL-20 biotransformation in two possible ways: (i) by competing with CL-20 for accepting electrons at the FAD site, since O2, in the absence of substrate, is known to accept electrons from the reduced salicylate 1-monooxygenase to produce H2O2 (19), and (ii) by quenching an electron from the CL-20 anion radical (described below), converting it back to the parent molecule (CL-20) and thus enforcing a futile redox cycling. Analogously, O2-mediated inhibition of RDX anion radical formation was observed during biotransformation of RDX catalyzed by diaphorase (2). Due to the inhibitory effect of oxygen, the subsequent experiments were carried out under anaerobic conditions.
Time course studies showed a gradual disappearance of CL-20 at the expense of the electron donor NADH with concomitant release of nitrite (NO2) and nitrous oxide (N2O) (Fig. 3). We found that N2O, although produced during later steps of CL-20 biotransformation (described below), appeared before NO2 in the assay medium, as shown in Fig. 3. This could be explained by two facts: (i) there was a large difference in the stoichiometries of nitrite (1.7) and nitrous oxide (3.2), and (ii) the nitrous oxide detection method (gas chromatography [GC] with electron capture detector) was much more sensitive (lowest-detection limit, 0.022 nmol) than the nitrite detection method (HPLC conductivity detector) (lowest detection limit, 5.434 nmol/ml). Hence, nitrous oxide was detected as early as 20 min into the reaction whereas nitrite was detected only after 30 min (Fig. 3). After 2 h of reaction, each reacted CL-20 molecule consumed about 1.9 NADH molecules and produced 1.7 nitrite ions, 3.2 molecules of nitrous oxide, 1.5 molecules of formic acid, and 0.6 molecule of ammonium (Table 1). Of the total 12 N atoms and 6 C atoms per reacted CL-20 molecule, we recovered approximately 9 N (as NO2, N2O, and NH4+) and 2 C (as HCOOH) atoms, respectively. The remaining 3 N and 4 C atoms were probably present in an unidentified product(s). In comparison, a membrane-associated flavoenzyme(s) from Pseudomonas sp. strain FA1 produced 2.3 nitrite ions, 1.5 molecules of nitrous oxide, and 1.7 molecules of formic acid from each reacted CL-20 molecule (Table 1). Furthermore, during photodegradation of CL-20 at 300 nm in acetonitrile aqueous solution, which was also initiated by N denitration, the product distribution was similar to that in the present study but the stoichiometry was different; i.e., each reacted molecule of CL-20 produced 5.0, 5.3, 1.4, and 0.3 molecules of NO2, HCOOH, NH3, and N2O, respectively (15). The probable reason for the higher yields of NO2 and HCOOH in photolysis of CL-20 was attributed to the intense action of the high-energy wavelength
300 (energy, 400 kJ/mol), which caused rapid cleavage of N-NO2 and -HC-NNO2 bonds in CL-20 (15).
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FIG. 3. Time course study of NADH-dependent biotransformation of CL-20 by salicylate 1-monooxygenase (1 mg) under anaerobic conditions. Data for residual CL-20 (), NADH ( ), nitrite ( ), and nitrous oxide ( ) are shown. The data are means of results from triplicate experiments, and error bars indicate standard errors. Some error bars are not visible due to their small size.
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TABLE 1. Comparative stoichiometries of reactants and products during biotransformation of CL-20 by the salicylate 1-monooxygenase from Pseudomonas sp. strain ATCC 29352 and the membrane-associated enzyme(s) from Pseudomonas sp. strain FA1
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FIG. 4. (A) Concentration-dependent inhibition of salicylate 1-monooxygenase-catalyzed biotransformation of CL-20 by DPI. (B) Biotransformation of CL-20 by the native (bar 1), deflavo (bar 2), and reconstituted (bar 3) salicylate 1-monooxygenase (3). A 100% CL-20 biotransformation activity was equivalent to 0.256 ± 0.011 nmol min1 mg of protein1. Data are mean percentages of CL-20 biotransformation activity ± standard errors (n = 3).
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Free FAD (100 µM) also transformed CL-20 in the presence of NADH (100 µM) at a rate of 0.035 ± 0.003 nmol min1; however, the biotransformation rate was only 14% of that of the bound FAD present in native salicylate 1-monooxygenase. The above finding additionally supported the involvement of FAD in CL-20 biotransformation and suggested that the flavin moiety has to be enzyme bound in order to function efficiently. The involvement of a flavoenzyme(s) in biotransformation of RDX (2) and HMX (3) via a one-electron transfer process has previously been reported. In a study with flavin mononucleotide containing diaphorase from Clostridium kluyveri, we reported an oxygen-sensitive one-electron transfer reaction that caused an initial N denitration of RDX followed by spontaneous decomposition (2). On the other hand, a FAD-containing xanthine oxidase also catalyzed a similar reaction with HMX (3).
Detection and identification of metabolites.
The metabolites, obtained by a reaction between salicylate 1-monooxygenase and CL-20 (metabolite I), were detected by their deprotonated molecular mass ion [M H] in LC/MS (ES) studies and are listed in Table 2. Intermediates III and IV appeared simultaneously, with retention times (Rt) of 8.2 and 7.5 min, respectively (Fig. 5A), but with the same [M H] at 345 Da (Fig. 5C), corresponding to an empirical formula C6H6N10O8. When ring-labeled [15N]CL-20 was used in the reaction, both intermediates III and IV showed a deprotonated molecular ion [M H] at 351 Da (Table 2; Fig. 5E), indicating that each intermediate included the six nitrogen atoms from the CL-20 ring. Moreover, the use of H218O did not affect the mass of intermediates III and IV. Intermediates III and IV, previously observed during photolysis of CL-20 (15), were tentatively identified as isomers resulting from the loss of two -NO2 groups during the initial reaction(s) between CL-20 and salicylate 1-monooxygenase. In the present study, we described the secondary decomposition of intermediate III, (Fig. 6). Intermediate IV, being an isomer of III, might also decompose like intermediate III.
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TABLE 2. Properties of metabolites detected and identified by LC/MS (ES) during biotransformation of CL-20 catalyzed by salicylate 1-monooxygenase from Pseudomonas sp. strain ATCC 29352
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FIG. 5. (A) LC/MS (ES) extracted ion chromatogram of CL-20 (I) and its metabolite (III or IV) produced by the reaction of CL-20 with salicylate 1-monooxygenase; the extracted mass ion of CL-20 was an adduct mass ion [M + NO3] at 500 Da, and the deprotonated mass ions [M H] of CL-20 (I) and its metabolite (III or IV) were 437 and 345 Da, respectively. (B to E) LC/MS (ES) spectra of nonlabeled CL-20 (B), its metabolite III or IV (C), uniformly ring-labeled [15N]CL-20 (D), and its metabolite III or IV (E) showed deprotonated mass ions [M H] at 437, 345, 443, and 351 Da, respectively.
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FIG. 6. Proposed pathway of the initial biotransformation of CL-20 catalyzed by salicylate 1-monooxygenase followed by secondary decomposition. Nitrogen atoms shown in bold were actually ring- nitrogens and were uniformly labeled in [15N] CL-20. Secondary decomposition of intermediate III is shown; intermediate IV might also decompose like intermediate III. The intermediate shown in brackets was not detected.
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To determine the source of N2O, experiments were performed with uniformly ring-labeled [15N]CL-20. 15N14NO was detected with a molecular mass of 45 Da by GC-MS analysis, confirming that of the two nitrogen atoms in N2O, one was from the labeled [15N]CL-20 ring and the second was from the unlabeled peripheral nitro (-NO2) group. We found that all of the N2O in the present study was labeled and produced from N-NO2 groups released from the CL-20, as previously suggested by Patil and Brill (27). Analogously, N2O generation from N-NO2 has also been reported during biodegradation of RDX (13) and HMX (3). In a previous study, we reported that N2O, besides being produced from N-NO2, was also produced via nitrite reduction catalyzed by an enzyme preparation from Pseudomonas sp. strain FA1 (4). In contrast, the present study did not show N2O production through nitrite reduction. For instance, when we incubated NaNO2 (1 mM) with salicylate 1-monooxygenase and NADH under similar reaction conditions to those used for CL-20 biotransformation, we did not detect N2O during 2 h of reaction, which additionally supported the idea that N-NO2 was the only source of N2O in the present study.
Proposed mechanism(s) of the initial reaction(s) followed by secondary decomposition of CL-20.
Based on the gradual appearance of nitrite (Fig. 3), reaction inhibition by oxygen and DPI, detection of an initial intermediate(s) (Fig. 5), and analogy to other systems (2, 3), we propose that salicylate 1-monooxygenase catalyzes a single-electron transfer to the CL-20 molecule (metabolite I) to produce an anion-radical (intermediate II) (Fig. 6). Spontaneous N denitration of intermediate II (i.e., release of the first NO2) would produce a transient N-centered free radical, as previously proposed during biotransformation (4), thermolysis (27) and photodegradation (15) of CL-20. The N-centered free-radical, being unstable, must undergo rapid rearrangement by cleavage at the weaker C
C bond bridging the two cyclopentanes in CL-20 (35). The rearranged molecule would accept a second electron in order to release a second NO2 to produce two isomeric intermediates, III and IV (Table 2; Fig. 5 and 6). Stoichiometrically, two N- denitration steps would require an obligatory transfer of two electrons (equivalent to one NADH molecule); however, we found that 1.9 NADH molecules were consumed for each reacted CL-20 molecule (Table 1). The excess of NADH (i.e., the remaining 0.9 molecule) utilization could be due to two possible reasons: (i) some NADH could bind to the enzyme and go undetected, or (ii) it could be utilized by a yet unidentified CL-20 metabolite(s).
Intermediate III, produced as a result of two N denitration steps, underwent hydrolysis by the addition of two H2O molecules across the two imine bonds (
C
N
) to produce an unstable carbinol derivative V, as confirmed by the experiment with H218O (discussed above). Imine bonds are known to be unstable and to decompose rapidly in water (22). Hence, V might cleave at the O2NN
CH(OH) bond following rearrangement to produce intermediate VI, which has a similar [M H] of 381 Da to that of intermediate V (Table 2; Fig. 6). Addition of a water molecule across an imine bond followed by ring opening has previously been detected during photolysis of CL-20 (15) and RDX (16) and during cytochrome P450-catalyzed biotransformation of RDX (5). Stoichiometric addition of two H2O molecules to intermediate VI, confirmed by the experiment with H218O, produced intermediate VII, with concomitant release of two nitramide molecules (NH2-NO2) (Table 2; Fig. 6). Intermediate VII, being an
-hydroxyalkyl nitramine, was unstable in water (8) and therefore decomposed to finally produce nitrous oxide, formic acid, and ammonia, as quantified in Table 1 and shown in Fig. 6.
In conclusion, we have provided the first biochemical evidence of the initial reaction(s) involved in the transformation of CL-20 catalyzed by salicylate 1-monooxygenase under anaerobic conditions. The mechanism described here is consistent with our previous enzymatic studies with RDX and HMX (2, 3), which also suggested that one-electron transfer is necessary and sufficient to cause N- denitration of RDX and HMX, leading to their spontaneous decomposition. Some of the CL-20 products observed in the present study are consistent with those reported previously with respect to alkaline hydrolysis (1), biotransformation (4), and photolysis (15). So far, very few reports are available with regard to microbial degradation of CL-20. For instance, Agrobacterium sp. strain JS71, a soil isolate, degraded CL-20 and assimilated 3 mol of nitrogen per mol of CL-20 (31). In a recent study, Pseudomonas sp. strain FA1 degraded CL-20 and assimilated about 4 mol of nitrogen per mol of CL-20 (4). However, the two previous studies (4, 31) detected no initial metabolite(s) and did not describe the involvement of any specific enzyme(s). The present study thus advances our understanding of the initial steps involved in biotransformation of CL-20 by flavoenzyme(s)-producing bacteria. Pseudomonas, being the source of salicylate 1-monooxygenase and other flavoenzymes, seems to be a promising degrader of CL-20. The ubiquitous presence of Pseudomonas and similar bacteria in environments such as soil, marine and freshwater sediments, and estuaries would therefore help in understanding the fate of CL-20 in such environments.
We gratefully acknowledge the analytical and technical support of A. Corriveau and C. Beaulieu. Finally, the critical suggestions of reviewers helped in improving the manuscript.
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-HNIW. Chin. Sci. Bull. 41:574-576.
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