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Applied and Environmental Microbiology, August 2004, p. 4575-4581, Vol. 70, No. 8
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.8.4575-4581.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Institute of Microbiology, Friedrich Schiller University of Jena,1 Department of Biotechnology, University of Applied Sciences of Jena, D-07743 Jena,4 Unit of Environmental Biotechnology, International Graduate School of Zittau, D-02763 Zittau,2 JenaBios GmbH, D-07749 Jena, Germany3
Received 6 January 2004/ Accepted 14 April 2004
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Over the last two decades, particular attention has been paid to the peroxidases of white rot fungi, which are involved in the biodegradation of lignin, humic materials, and organopollutants (13, 16, 33). These enzymes are capable of oxidizing recalcitrant aromatic molecules by one-electron abstractions, resulting in the formation of unstable radicals, which tend to disintegrate spontaneously (19). Numerous isozymes of lignin peroxidase (LiP) and manganese peroxidase (MnP), as well hybrid forms of both enzymes (the so-called versatile peroxidases), have been purified and characterized from different basidiomycetes, including Phanerochaete chrysosporium, Phlebia radiata, Trametes versicolor, Pleurotus eryngii, Bjerkandera spp., and Stropharia coronilla (14, 31). In addition to these ligninolytic enzymes, which preferentially oxidize nonphenolic aromatic compounds and/or Mn2+ ions, there have been reports of other peroxidases from basidiomycetous fungi that resemble plant peroxidases and oxidize phenolic and amino aromatic compounds (e.g., peroxidases from Coprinus cinereus and related species and versatile peroxidases) (15, 25, 26). Heme haloperoxidases, which introduce chlorine, bromine, or iodine into organic molecules and also oxidize various aromatic and aliphatic compounds, are other examples of versatile fungal heme proteins; however, they have not been found in basidiomycetes to date, although they have been found in several ascomycetes (6, 12, 27).
In this paper, we describe a novel type of peroxidase from the basidiomycetous fungus Agrocybe aegerita, a common edible mushroom in Mediterranean countries, which oxidizes aryl alcohols and aldehydes at neutral pH and shows haloperoxidase activity.
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Culture conditions.
Fungal stock cultures were maintained on malt extract agar in culture slants and were stored at 4°C in the dark. The fungus was routinely precultured on 2% malt extract agar plates for 2 weeks. The contents of agar plates were homogenized in 40 ml of a sterile NaCl solution (0.9% NaCl), and each mycelial suspension was used to inoculate liquid cultures (2.5 to 5%, vol/vol). The basal liquid medium contained 30 g of soybean meal (Hensel Voll-Soja; Schoeneberger GmbH, Magstadt, Germany) per liter. In addition to soy meal, various concentrations of Bacto Peptone (Difco Laboratories, Detroit, Mich.) were tested. Fungal cultures were agitated in 500-ml flasks containing 200 ml of medium on a rotary shaker (100 rpm) at 24°C in the dark for 14 days. Samples were taken every 1 to 3 days, and the activities of peroxidases and laccase were measured.
The medium used for production of larger amounts of A. aegerita peroxidase (AaP) in a 5-liter stirred-tank bioreactor (Biostat B; Braun Biotech International GmbH, Melsungen, Germany) consisted of 20 g of soybean meal per liter and 5 g of Bacto Peptone per liter and was inoculated with 200 ml of a fungal suspension precultured as described above (fermentation parameters: agitation at 300 rpm and 100% pO2 for dissolved oxygen concentration). The peroxidase and laccase activities, as well as the pH, were determined every 1 to 2 days during a total fermentation period of 11 days.
Chemicals.
2,2'-Azinobis-(3-ethylbenzothiazoline-6-sulfonate) (ABTS), 2,6-dimethoxyphenol (DMP), veratryl alcohol, veratraldehyde, veratric acid, benzyl alcohol, benzaldehyde, and anisyl alcohol, as well as glucose oxidase (from Aspergillus niger), were purchased from Sigma-Aldrich (Steinheim, Germany). Chloroperoxidase (CPO) from Caldariomyces (Leptoxyphium) fumago and 2-chloro-5,5-dimethyl-1,3-cyclohexanedione (monochlorodimedone [MCD]) were obtained from Fluka (Buchs, Switzerland).
Enzyme assays and UV-visible spectra.
The activity of AaP was measured at 310 nm by monitoring the oxidation of veratryl alcohol into veratraldehyde (
310 = 9.3 mM1 cm1). Unlike the LiP reaction (40), the reaction was carried out at pH 7 in sodium phosphate/citrate buffer (McIlvaine buffer) and was started by addition of 2 mM H2O2. AaP activities with benzyl alcohol and benzaldehyde were measured under identical conditions by monitoring either the formation (
280 = 1.4 cm1 mM1) or the conversion (
300 = 0.6 cm1 mM1) of benzaldehyde. Oxidation of DMP was determined by using the same assay mixture and an
569 of 49.6 cm1 mM1 (44); for ABTS oxidation (
420 = 36 cm1 mM1) the pH of the buffer was adjusted to 5. Laccase activity was also determined with ABTS, but H2O2 was omitted from the reaction mixture (9).
Haloperoxidase activity was measured quantitatively by monitoring the chlorination or bromination of MCD (
290 = 20.1 cm1 mM1) in potassium phosphate buffer (pH 2.75) (12).
For comparison, commercial CPO from the ascomycete C. (L.) fumago (Fluka) was tested by using conditions identical to those used in the AaP assays. All enzyme activities were expressed in units (micromoles of product formed per minute or micromoles of substrate converted per minute).
UV-visible spectra of resting, oxidized, and reduced AaP were recorded in 10 mM sodium phosphate buffer (pH 7) in the wavelength range from 200 to 700 nm by using a Lambda 2 spectrophotometer (Perkin-Elmer, Fremont, Calif.). Oxidation and reduction of AaP (3.3 µM) were achieved by addition of H2O2 (15 or 100 mM) and a small crystal of sodium dithionite, respectively.
Enzyme purification and characterization.
Culture fluid (3.9 liters) from the liquid fermentation was frozen (20°C) and then thawed to precipitate the free extracellular glucan that was produced by the fungus under the culture conditions used. Precipitated material was removed by centrifugation and subsequent filtration through glass fiber filters. Filtrates were concentrated 60-fold by ultrafiltration by using a tangential-flow cassette (Omega open channel; molecular mass cutoff, 10 kDa; Pall-Filtron, Dreieich, Germany) and a 250-ml filter chamber unit equipped with a 10-kDa-cutoff polysulfone membrane (Amicon, Beverly, Mass.).
Crude enzyme was purified further by several steps of ion-exchange chromatography by using Q Sepharose, SP Sepharose, and Mono S columns, as well as an ÄKTA fast protein liquid chromatography (FPLC) system (Amersham Biosciences, Freiburg, Germany). Separation was carried out by using sodium acetate (10 mM, pH 4.25 to 6.0) as the solvent and an increasing sodium chloride gradient (0 to 0.3 or 0.6 M) for protein elution (see Fig. 2).
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FIG. 2. FPLC elution profile of peroxidases from A. aegerita TM A1 on a Mono S column. Absorption at 405 nm (thick line) and 280 nm (thin line), AaP activity (), and the NaCl gradient (dotted line) were determined. AaP activity was measured with veratryl alcohol as the substrate.
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For N-terminal amino acid analysis, purified AaP was separated by 2-D electrophoresis, and the spots of the AaP II fraction (spots a and b) stained with Coomassie blue (see Fig. 3B) were transferred by electroblotting with a Trans Blot cell (Bio-Rad, Munich, Germany) onto a polyvinylidene difluoride membrane (ProBlott; Perkin-Elmer, Applied Biosystems, Foster City, Calif.). N-terminal amino acid sequences were determined by Sequence Laboratories GmbH, Göttingen, Germany.
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FIG. 3. Electrophoretic characterization of purified AaP. (A) SDS-PAGE after each purification step. From left to right the lanes contained crude extract, AaP fractions after Q Sepharose separation, AaP I after SP Sepharose separation, AaP I after Mono S separation, protein standards, AaP II after SP Sepharose separation, and AaP II after Mono S separation. (B) 2-D plot of purified AaP II after isoelectric focusing and SDS-PAGE. Spots b (basic form) and a (acidic form) were plotted and used for determination of N-terminal amino acid sequences.
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Substrate oxidation experiments.
The following substrates (200 µM) were treated with purified AaP (1 U [= 12 µg = 0.26 µM]) in stirred 3-ml vials containing 1 ml of a reaction solution: veratryl alcohol, anisyl alcohol, benzyl alcohol, and ethanol. Each reaction mixture contained sodium phosphate/citrate buffer (pH 7), 15 mM glucose, and 0.2 U of glucose oxidase (Sigma-Aldrich). The reaction mixtures were incubated at 25°C, and the alcohol and aldehyde concentrations were determined after 20 and 30 min. High-performance liquid chromatography analyses were performed by using a model HP 1090 liquid chromatograph (Agilent, Waldbronn, Germany) equipped with a Merck LiChrospher 5-µm RP-18 reversed-phase column (4.6 by 125 mm). A mixture of acetonitrile and 0.05% acetic acid (40:60, vol/vol) was used as the solvent at a flow rate of 1 ml min1 under isocratic conditions. Eluted substances were detected in the wavelength range from 190 to 550 nm and were identified by using authentic standards.
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TABLE 1. Peroxidase production by several strains of A. aegerita, as well as three other species of the genus Agrocybe, in soybean meal medium
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FIG. 1. (A) Effect of soybean meal ( ) and Bacto Peptone ( ) on the production of peroxidase by A. aegerita TM A1. The concentration of one component was varied in the presence of a constant amount of the other component (5 g of Bacto Peptone per liter or 20 g of soybean meal per liter). (B) Time course of peroxidase and laccase titers in a 5-liter bioreactor with a soybean meal-Bacto Peptone medium. Peroxidase activity () was measured by determining the oxidation of veratryl alcohol into veratraldehyde at pH 7; laccase activity ( ) was measured with ABTS. The dotted line indicates the time course of pH.
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Purification of AaP.
Culture filtrate from the bioreactor was harvested after 10 days and frozen to remove dissolved polysaccharides. This procedure led, after centrifugation, to loss of about 45% of the activity, which can be explained by the partial adsorption of AaP to the precipitated polysaccharides (Table 2). After ultrafiltration, the concentrated crude extract was separated by three steps of ion-exchange chromatography by using FPLC equipment. Figure 2 shows the elution profile for the third purification step with a Mono S column (strong cation exchanger). Two fractions of the enzyme (designated AaP I and AaP II) absorbing at 405 nm (heme) and exhibiting peroxidase activity with veratryl alcohol were distinguished. The final specific activities of both AaP fractions were around 165 U mg1, but the total activity of AaP II was considerably higher than that of AaP I (244 versus 20 U); the Reinheitszahl values of AaP I and AaP II were 1.65 and 1.85, respectively.
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TABLE 2. Purification of peroxidase from A. aegerita TM A1a
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The UV-visible spectrum of the resting enzyme (AaP II after purification) had a characteristic absorption peak at 420 nm (Soret band), which gave the purified enzyme its characteristic reddish color, and two absorption maxima at 540 and 572 nm (Fig. 4). Addition of catalytic amounts of H2O2 (0.2 to 15 mM) led to only slight changes in the spectrum, and the maxima did not shift (Fig. 4); adding excess H2O2 (100 mM) resulted in the immediate formation of gas bubbles and in a drastic decrease in the absorption intensity, but again no shift of the absorption maxima was observed. Addition of sodium dithionite to the resting enzyme caused a shift in the peak from 420 to 409 nm, and in the longer-wavelength range, the peak at 572 nm became a shoulder and a new maximum appeared at 625 nm (Fig. 4).
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FIG. 4. Spectral characteristics of AaP (3.3 µM), including the resting enzyme (thick line), the enzyme oxidized by 15 mM H2O2 (dotted line) or 100 mM H2O2 (dashed line), and the reduced enzyme (after addition of a sodium dithionite crystal) (thin line).
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7%), but the first three amino acids, as well as two additional amino acids (positions 7 and 9), were identical to amino acids at the N terminus of CPO from the ascomycete C. (L.) fumago (35% sequence identity).
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FIG. 5. N-terminal sequence alignment of two AaP II isoforms and several fungal peroxidases, including A. aegerita peroxidase (AaP II spot a and AaP II spot b after 2-D electrophoresis), CPO from C. fumago (CP), C. cinereus peroxidase (CiP), LiP H8 b from P. chrysosporium (PcLiP), MnP from A. bisporus (AbMnP), and versatile peroxidase from P. eryngii (PeVP).
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TABLE 3. Oxidation of several alcohols and aldehydes by purified AaPa
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TABLE 4. Apparent Michaelis-Menten constants (Km) and catalytic constants (kcat) of AaP II for veratryl alcohol, benzyl alcohol, ABTS, and DMPa
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FIG. 6. Effect of pH on the oxidation of ABTS (0.3 mM) () and veratryl alcohol (5 mM) ( ) (A) and on the oxidation of DMP (1 mM) ( ) and benzyl alcohol ( ) (B) by AaP II. Reactions were performed in sodium phosphate/citrate buffer in the presence of 2 mM H2O2 at 25°C. The data are means for three parallel experiments, and the error bars indicate standard deviations.
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TABLE 5. Oxidation of different substrates and halogenation of MCD by purified AaP and CPO from C. fumagoa
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CPOs are known from bacteria and ascomycetous fungi and are among the most versatile oxidoreductases (7). Among the fungal enzymes, two types, vanadium and heme-thiol peroxidases, are distinguished (5, 43). Both types are capable of chlorinating and brominating organic substrates, but they also catalyze various other oxidation reactions (7, 8, 38). So far, both fungal vanadium and heme-thiol CPOs have been found only in ascomycetes and related deuteromycetes (2, 12, 24), although their presence in basidiomycetes was proposed some years ago (6) and very recently there have been indications that there is a putative CPO gene in Agaricus bisporus (white button mushroom) (41). Brominating activities have been described for LiP and MnP, but these enzymes do not chlorinate the assay substrate MCD (10, 36). On the other hand, there is extensive information concerning absorbable organic halogens formed by basidiomycetes as secondary metabolites (6, 11, 42). Most of the more than 80 halogenated metabolites identified from basidiomycetes to date are chlorinated, and they are produced by fungi belonging to 68 genera and 20 different families (6). Taxonomic hot spots are found in the order Agaricales, particularly in the families Strophariaceae and Tricholomataceae (6, 42), which are closely related to the Bolbitiaceae, which is the family that A. aegerita belongs to.
Despite the fact that AaP shares the first three amino acids of the N terminus with Caldariomyces CPO and halogenates MCD, the former enzyme differs from the known heme CPOs in its pH behavior, substrate spectrum, and specificity, as well as in the UV-visible spectrum. Thus, the spectrum of the resting enzyme shows the Soret maximum at 420 nm and additional absorption maxima at 359, 540, and 572 nm. Interestingly, these maxima correspond with those reported for CPO compound II (358, 438, 542, and 571 nm) rather than with those of the native enzyme (403, 515, 542, and 650 nm) (7, 12). AaP reduced by sodium dithionite showed more similarity to the corresponding form of CPO. It had a Soret maximum at 409 nm, a shoulder in the 460-nm region, and two peaks around 550 and 640 nm; only the shoulder at 420 nm was lacking in the reduced form of AaP.
The substrate spectrum of AaP comprises phenolic compounds, ABTS, aryl alcohols, and aldehydes, as well as halogenides (Cl, Br). CPO is also able to oxidize most of these substrates; however, the specific activities (except those for halogenides) are lower, and aldehydes are apparently not CPO substrates. CPO-catalyzed oxidation of aryl alcohols into the corresponding aldehydes has been described for the Caldariomyces enzyme (1). Similar to AaP, this CPO converted benzyl and anisyl alcohols into the corresponding aldehydes; however, the specific constants reported for CPO are considerably lower than those of AaP. The CPO reaction with aryl alcohols has been proposed to occur via an attack on the benzylic carbon, resulting in the formation of the benzylic radical and cation (1); a similar mechanism is also conceivable for AaP. Furthermore, it was found that CPO possesses prochiral selectivity in the oxidation of aryl alkanols that makes the enzyme interesting for applications in chemical syntheses (1, 30). This is also true for AaP, especially when its broader substrate spectrum and higher pH optima are taken into consideration.
AaP seems to act not only as a peroxidase but also as a catalase, which was shown by the intensive formation of gas bubbles (very probably O2) after addition of larger amounts of H2O2 in the absence of a second available substrate. CPO from Caldariomyces also has strong catalase activity, and there is a whole class of so-called catalase-peroxidases that are found in both prokaryotes and eukaryotes (8, 39).
CPO production by C. fumago was carried out at a larger scale in complex media comprising fructose and Phytone (papaic digest of soybean meal) in airlift fermentors (3), and the enzyme can now be produced as a recombinant protein (e.g., in A. niger) (4). Culturing A. aegerita in a heavily stirred bioreactor was possible, and the enzyme production was only slightly reduced due to shear stress. For AaP production, soybean meal was found to be the key nutrient, and the concentration of the meal correlated with the AaP activity. Complex N-rich media were also found to promote fungal growth and peroxidase production in other basidiomycetes. Thus, mixtures of Bacto Peptone, yeast extract, and sugars enabled the production of large amounts of versatile peroxidase (a hybrid of MnP and LiP) by Bjerkandera sp. strain BOS55 and P. eryngii (23, 25). On the other hand, nitrogen was shown to repress the production of ligninolytic peroxidases in other fungi (for example, P. chrysosporium or P. radiata) (20, 22). A medium quite similar to that used in our study, consisting of soybean meal, Bacto Peptone, and maltose, was successfully used to produce laccases and peroxidases in a stirred bioreactor with dung- and grassland-dwelling agaric basidiomycetes (Panaeolus spp., Coprinus friseii) (15).
Two isoenzymes of Caldariomyces CPO, isoenzymes A and B, were reported to have molecular masses of 40 and 46 kDa; later work showed that there are multiple forms that differ only in the carbohydrate content, which varies between 20 and 30% (17, 34). We also found two fractions of AaP based on the FPLC elution profiles, and there were indications of multiple forms of the enzyme (at least six isoforms) that became visible in the SDS-PAGE and 2-D gel electrophoresis plots.
At the moment, it is difficult to speculate about the physiological role of AaP. According to previously published reports, involvement of the enzyme in the production of halogenated metabolites that act as antibiotics or as part of the ligninolytic system can be proposed (6). This possibility is particularly interesting because A. aegerita apparently lacks MnP and LiP (32) but colonizes wood and causes, according to some authors, a moderate white rot (35, 46). Moreover, the ability of Caldariomyces CPO to chlorinate and cleave recalcitrant lignin structures has been reported very recently (29), suggesting that this type of enzyme could be involved in the biodegradation of lignocellulosic materials.
Hence, future studies on AaP should focus on two questions. (i) What is the physiological function of AaP, and is the enzyme somehow involved in lignin biodegradation? (ii) Do other basidiomycetes, particularly those secreting large amounts of absorbable organic halogens, produce AaP-like peroxidases? If so, what ecological and environmental significance does this type of halogenation of organic compounds, for example, have for the recently reported formation of stable chlorinated hydrocarbons in weathering plant material (28)? In this context, the substrate spectrum of AaP should be studied more in detail and compared with the substrate spectra of CPO and other peroxidases. The first attempts in this direction are currently being undertaken in our laboratories.
We thank G. Gramss (Jena, Germany) for providing the fungal strain A. aegerita TM A1, R. Upadhyay (Solan, India) for useful preinvestigations, and I. Schwabe (Jena, Germany) and U. Schneider (Zittau, Germany) for excellent technical assistance.
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