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Applied and Environmental Microbiology, August 2004, p. 4784-4791, Vol. 70, No. 8
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.8.4784-4791.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Unité Génétique Microbienne et Environnement, Institut National de la Recherche Agronomique, La Minière, 78285 Guyancourt Cedex,1 Groupe Génétique et Physiologie des Bacillus pathogènes, Institut Pasteur, 75724 Paris Cedex 15, France2
Received 12 February 2004/ Accepted 19 April 2004
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yqgB
yqfZ mutant was also nonmotile, and its growth was affected at 25°C. We analyzed lacZ transcriptional fusions and detected promoter activity upstream from yqgB at 25 and 37°C. Overall, our findings suggest that the yqgB and yqfZ genes encode adaptive factors that may act in synergy, enabling the bacteria to cope with the physical environment in vivo, facilitating colonization of the host. |
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-endotoxins or Cry proteins, which are synthesized during the stationary phase. Upon ingestion by susceptible insects, crystal toxins bind to midgut epithelial cell-specific receptors, disrupting the integrity of the gut and providing a means of entry into the host (27). This specific toxemia may itself be fatal to insect larvae. However, B. thuringiensis can also kill insects by means of a mechanism not mediated by Cry toxins. Indeed, B. thuringiensis strains lacking crystals are fully virulent when injected into insect larvae or pupae. For some B. thuringiensis strains, inocula containing small numbers of cells have been shown to multiply to high titers and to invade the insect hemocoel, causing septicemia (5, 13, 33). The involvement of the bacteria itself in the killing of insects provides evidence for the existence of additional virulence factors allowing B. thuringiensis to survive and to multiply in the hostile in vivo environment and to withstand the immune defenses of the host. B. thuringiensis is known to produce several putative virulence factors, including phospholipases C, enterotoxins, hemolysins, cell surface proteins, and metalloproteases, all of which may be involved in establishing infection. Genes encoding these factors are controlled by a transcriptional pleiotropic activator, PlcR (1, 18). However, none of these factors has been shown to play an essential role in the pathogenic mechanisms by which B. thuringiensis causes systemic septicemia. Indeed, inactivation of the PlcR regulon has no effect on B. thuringiensis virulence in intrahemocoelic infection models (26). A zinc-metalloprotease, InhA, which had been reported to hydrolyze Hyalophora cecropia antibacterial peptides specifically (3, 5) and to be highly toxic when injected into the hemolymph of insects (20, 28), was found to make no major contribution to the pathogenic properties of B. thuringiensis (7). To date, only clpP1, the gene encoding the proteolytic subunit of Clp ATP-dependent proteases, has been demonstrated to be involved in B. thuringiensis virulence in the Bombyx mori infection model. However, ClpP1 seems to be required for efficient cell division at low temperatures rather than for the pathogenic properties of B. thuringiensis cells (6).
We carried out transposon mutagenesis in the pathogenic acristalliferous B. thuringiensis strain 407 Cry, with the aim of identifying virulence determinants. The transposon library was screened for loss of virulence in a model of bacteremia, the silkworm B. mori, which is known to be particularly susceptible to low-titer inocula of B. thuringiensis strain 407 Cry. We report here the identification and characterization of two genesyqgB and yqfZof unknown function, mutations in which decreased the pathogenicity of B. thuringiensis against B. mori larvae.
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(lac-proAB) supE thi hsd
5 (F' traD36 proA+ proB+ lacIq lacZ
M15)] (10) was used as a host for cloning experiments. ET12567 (F dam-13::Tn9 dcm-6 hsdM hsdR recF143 zjj-202::Tn10 galK2 galT22 ara-14 pacY1 xyl-5 leuB6 thi-1) was used to generate unmethylated plasmid DNA for the electrotransformation of B. thuringiensis. B. thuringiensis and E. coli strains were transformed by electroporation as previously described (4, 19). E. coli and B. thuringiensis cells were cultured in Luria-Bertani (LB) broth, with vigorous shaking, at 37 and 30°C, respectively. The antibiotic concentrations used for bacterial selection were as follows: 100 µg of ampicillin ml1 for E. coli; 100 µg of spectinomycin ml1 for E. coli and 300 µg of spectinomycin ml1 for B. thuringiensis; 20 µg of kanamycin ml1 for E. coli and 200 µg of kanamycin ml1 for B. thuringiensis; and 10 µg of erythromycin ml1 for B. thuringiensis. If used concomitantly, the doses of antibiotics were adjusted to 250 µg of spectinomycin ml1 and 3 µg of erythromycin ml1.
For phenotypic studies, various stress conditions were established as follows. Frozen glycerol stocks (exponentially growing cells; optical density at 600 nm [OD600] of 1) of the various strains were diluted 1:100 in LB medium devoid of antibiotics and cultured with vigorous shaking at 37°C. At an OD600 of 0.1 to 0.2, the culture was divided in two. One of the resulting half-cultures was incubated at 37°C (control), whereas the other half was mixed with sodium chloride at a final concentration of 6% (wt/vol) or with 1.7% (wt/vol) lithium chloride.
Motility assays were performed on LB soft agar swarm plates (final concentration, 0.3% agar) by spotting 2 µl of a culture with an OD600 of 1 at the center of the plate and then incubating the plate for 24 h at 37°C. During this period, we measured colony diameters at 8-h intervals and scored motility.
We used Columbia medium agar plates (Biomérieux) containing 5% sheep blood to assay the hemolytic activity of B. thuringiensis strains.
Sporulation assays were performed as follows. Frozen glycerol stocks of exponentially growing cells were diluted 1:100 in sporulation-specific medium (hydrolysate of casein tryptone) (16) devoid of antibiotics and incubated for 24 h at 37°C. Sporulating cells were subjected to heat treatment (80°C, 12 min), with serial dilutions plated before and after heat treatment. Sporulation frequencies were established on the basis of viable-cell and heat-resistant spore counts.
DNA manipulations.
Plasmid DNA was extracted from E. coli by standard alkaline lysis by using QIAprep spin columns (QIAGEN). Chromosomal DNA was extracted from B. thuringiensis cells harvested in the mid-exponential growth phase, as previously described (22). Restriction enzymes and T4 DNA ligase were used as recommended by the manufacturer (New England Biolabs). Oligonucleotide primers (Table 1) were synthesized by Proligo (Paris, France). PCR was performed in a GeneAmp PCR system 2400 thermal cycler (Perkin-Elmer). Amplified DNA fragments were purified with the QIAquick PCR purification kit (QIAGEN). Digested DNA fragments were separated by electrophoresis and eluted from agarose gels with a centrifugal filter device (Montage Genomics; Millipore, Billerica, Mass.).
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TABLE 1. Primer sequences used in this study
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Insects and experimental infections in vivo.
Eggs of B. mori strain Nistari provided by the Institut National de la Recherche Agronomique (Unité Nationale Séricicole, Lyon, France) were incubated at 25°C. The hatched larvae were reared on a commercially available artificial diet (Fukui and Co., Ltd., Yokohama, Japan). Pathogenicity assays were carried out with B. thuringiensis vegetative cells.
For in vivo screening, B. thuringiensis clones isolated from the insertion library were plated on LB agar medium devoid of antibiotics and incubated for 18 h at 30°C. Colonies were picked with an entomologic pin, which was then used to prick the hemocoel of three successive B. mori larvae such that the inoculum was most concentrated for the first larva, less concentrated for the second larva, and least concentrated for the third larva. The B. mori larvae were inoculated on the first day of the third instar. Infection experiments were repeated three times, and infected larvae were incubated in plastic containers at 25°C. Mortality was recorded 24 h after infection.
For the determination of 50% lethal doses (LD50s), cells of wild-type and mutant strains of B. thuringiensis were cultured in LB medium devoid of antibiotics at 30°C, with shaking. Bacterial densities were monitored by determining the OD600 and checked by plating dilutions on LB agar plates. Various dilutions of exponentially growing B. thuringiensis cells were used to inoculate groups of 30 B. mori larvae (10 µl of cell suspension larva1). The control group was injected with sterile water. B. mori larvae were used on the first day of the fourth instar and weighed about 150 to 200 mg. The injections were delivered into the intersegmental membrane between the fourth and fifth abdominal leg of the larva by using a 1-ml Terumo syringe and a microapplicator (Buckard type LV. 65). Inoculated larvae were incubated individually in plastic containers at 25°C. Mortality was recorded daily over a 3-day period.
We counted B. thuringiensis cells in the living and dead insects as follows. Five infected larvae in each infection experiment were individually crushed and homogenized in 1 ml of sterile water, and dilutions were plated on LB agar plates containing the appropriate antibiotics.
Database comparisons and sequence analysis.
Sequences were compared and aligned with sequences from the GenBank database by using the BLAST program of the National Center for Biotechnology Information (NCBI; http://www.ncbi.nlm.nih.gov/genomes/MICROBES/Complete.html) network server. Bacillus anthracis genome sequences were provided by the NCBI network server. The Bacillus subtilis sequence was obtained from SubtiList (http://genolist.pasteur.fr/SubtiList), and Listeria monocytogenes and Listeria innocua sequences were obtained from ListiList (http://genolist.pasteur.fr/ListiList). The B. cereus genome sequence was obtained from http://integratedgenomics.com.
PCR amplification and sequencing of the B. thuringiensis yqgB and yqfZ genes.
Two synthetic oligonucleotides, YqgB1 and YqfZ1 (Table 1), were designed from the B. cereus strain ATCC 14579 (http://www.integratedgenomics.com) genomic region encompassing the yqgB and yqfZ genes, from positions 940 to +1240 with respect to the ATG start codon and the TAA terminal codon of yqgB and yqfZ, respectively. YqgB1 and YqfZ1 were used to amplify a 3,210-bp fragment, with 407 Cry chromosomal DNA used as the template. PCR was carried out in a reaction volume of 100 µl with Pfx DNA polymerase, as recommended by the manufacturer (Invitrogen, Life Technologies). Purified PCR products were sequenced on both strands by Genome Express (Paris, France) by using oligonucleotides YqgB2, YqgB3, YqgB4, YqgB5, YqgB6, YqfZ2, and YqfZ3 (Table 1) based on the B. cereus strain ATCC 14579 yqgB/yqfZ genomic region.
Site-directed mutagenesis.
A deletion-replacement mutant of yqgB was constructed as follows. A 963-bp NcoI/SmaI DNA fragment and a 988-bp EcoRI/BamHI DNA fragment, corresponding to the DNA chromosomal regions located immediately upstream and downstream from the yqgB gene, respectively, were generated by PCR using B. thuringiensis strain 407 Cry chromosomal DNA as a template and oligonucleotide pairs YqgB2-YqgB12 and YqgB11-YqgB6, respectively (Table 1). A Kmr cassette, conferring resistance to kanamycin, was purified from pDG783 as a 1.5-kb SmaI/EcoRI fragment carrying the aphA3 gene from Enterococcus faecalis (30). The amplified DNA fragments and the Kmr cassette were digested with the appropriate enzymes and inserted between the NcoI and BamHI sites of the thermosensitive plasmid pMAD (M. Arnaud, A. Chastanet, and M. Debarbouillé, unpublished data), a derivative of the thermosensitive plasmid pE194 (31) conferring resistance to erythromycin in gram-positive hosts and to ampicillin in E. coli and harboring a constitutively expressed transcriptional fusion with the Bacillus stearothermophilus bgaB gene encoding the thermostable ß-galactosidase (14). The resulting plasmid was checked by restriction mapping and used to transform the wild-type strain 407 Cry. Integrants resistant to kanamycin, sensitive to erythromycin, and appearing white on LB agar medium supplemented with X-Gal arose through a double-crossover event in which the chromosomal wild-type copy of yqgB was deleted and replaced with the Kmr cassette, as previously described (17). The chromosomal allele exchange was checked by PCR with the appropriate oligonucleotide primers. The corresponding mutant strain was named 407 Cry
yqgB.
A deletion-replacement mutant of yqfZ and a double deletion-replacement mutant of both yqfZ and yqgB were constructed as reported for the 407 Cry
yqgB mutant using the following primer pairs: YqfZ2-YqfZ5 and YqfZ3-YqfZ6 for the 407 Cry
yqfZ mutant and YqgB2-YqgB6 and YqfZ3-YqfZ6 for the 407 Cry
yqgB
yqfZ double mutant.
Construction of lacZ fusions and determination of ß-galactosidase activity.
We constructed lacZ reporter gene fusions to yqgB and yqfZ by inserting, between the BamHI and PstI sites of pHT304-18'Z (2), PstI-BamHI-digested PCR fragments amplified with Taq polymerase, with B. thuringiensis strain 407 Cry chromosomal DNA used as a template. The synthetic oligonucleotide pairs YqgB7-YqgB8 and YqgB9-YqfZ4 were used to generate two fragments of 555 bp and 392 bp, respectively, corresponding to the yqgB and yqfZ upstream regions. The recombinant plasmids pHT-yqgB'Z and pHT-yqfZ'Z were introduced by electroporation into the B. thuringiensis wild-type strain (407 Cry).
Colonies expressing lacZ fusions were detected on media containing 5-bromo-4-chloro-3-indolyl-D-galactopyranoside (X-Gal) (40 µg ml1) and erythromycin (10 µg ml1). Cells were cultured in LB medium devoid of antibiotics at 25 and 37°C, with vigorous shaking, and the specific activity of ß-galactosidase was determined as previously described (12).
Statistical analysis.
Mortality data were analyzed by calculating 50% lethal doses (LD50s) with the Log-Probit program (8, 25).
Nucleotide sequence accession number.
The nucleotide sequence of the B. thuringiensis strain 407 Cry genomic region encompassing yqgB and yqfZ has been deposited in the GenBank database under the accession number AY455944.
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Molecular characterization of clone Bt11.
Southern hybridization, using the internal part of mini-Tn10 (spectinomycin resistance gene) as a probe and the chromosomal DNA of clone Bt11 digested with either EcoRI or HindIII, showed that the clone contained a single transposon insertion (data not shown). BLAST analysis of the DNA sequences surrounding the transposon insertion sites and of homologous sequences deposited in the NCBI database revealed that mini-Tn10 was inserted 14 bp upstream from the 3' end of a putative 756-bp open reading frame (ORF), encoding a protein with a deduced amino acid sequence 98% identical to that of the putative YqgB protein of B. cereus strain ATCC 14579. An ORF was identified 65 bp downstream from the yqgB TAA codon, encoding a 121-amino-acid protein that is 98.4% identical to the B. cereus strain ATCC 14579 YqfZ protein (Fig. 1). By analogy with B. cereus, we named these B. thuringiensis genes yqgB and yqfZ. The ATG codons of both the yqgB and yqfZ genes of B. thuringiensis were preceded by a potential ribosome-binding sequence at an appropriate distance. The TAA stop codons of both ORFs were followed by a possible rho-independent transcription terminator. The stem-loop sequences corresponding to these putative terminators were AAAAAAATGCCTAAATAGGCATTTTTTT for yqgB and GAAACCGAGCACTTCGGTTTC for yqfZ. These genes were found to be highly conserved and similarly organized in other organisms such as B. subtilis, L. monocytogenes, L. innocua, B. anthracis, and Bacillus halodurans, except that in B. subtilis, yqfZ and yqgB are separated by the yqgA gene transcribed in the opposite orientation. However, no function has yet been assigned to these genes in any of these other organisms. Analysis of the predicted amino acid sequences of YqgB and YqfZ by the Signal P and TMHMM predictor servers (15, 23) suggested that YqgB is probably a transmembrane protein, whereas YqfZ is probably secreted.
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FIG. 1. Schematic representation of the yqgB and yqfZ genes in B. thuringiensis strain 407 Cry and B. cereus strain ATCC 14579. The mini-Tn10 insertion in the B. thuringiensis yqgB gene is indicated. Potential stem-loop structures are represented. The segments indicate the DNA fragments used to construct the lacZ plasmid transcriptional fusions.
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yqgB and
yqfZ mutants did not differ significantly from that of the 407 Cry parental strain, as the confidence intervals for the LD50s overlapped (Table 2). In contrast, the
yqgB
yqfZ double mutant was markedly less pathogenic (about one-tenth as pathogenic as the wild-type parental strain) (Table 2). However, the avirulent phenotype of the double mutant strain was limited to the first 24 h following infection. Larvae injected with the cells of the double mutant strain became sick after 24 h but did not die immediately. Instead, they started to die 1 day later. Indeed, the LD50 of the double mutant reached values similar to the LD50 of the parental strain, which remained unchanged, 2 days after infection (Table 2). The time lag before the first observed deaths indicates an effect on the progression of the infection for the double mutant strain. |
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TABLE 2. Pathogenicity of vegetative cells from B. thuringiensis wild-type and mutant strains injected into the hemocoel of B. mori larvae
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yqgB
yqfZ double mutant. After 24 h, 3.8 x 107 CFU larva1 were counted in living larvae infected with the mutant strain versus 5.37 x 108 CFU larva1 for the B. thuringiensis parental strain. Thus, mutant cell in vivo counts were one-tenth of the parental strain number, which suggests that the delayed death of the larvae was due to a defect in bacterial growth.
Phenotypic analysis of the mutant strains.
We investigated the possible functions of YqgB and YqfZ by looking for changes in the phenotypes of the mutants in terms of chemical stresses and stationary phase adaptive responses (see Materials and Methods). All mutants displayed growth rates similar to the rate of the parental strain in the presence of 6% NaCl or 1.7% LiCl, the highest concentrations compatible with the growth and survival of B. thuringiensis 407 Cry (data not shown). We also determined hemolytic activity on sheep blood agar. All mutant strains were fully hemolytic on sheep erythrocytes, indicating that yqgB and yqfZ are not involved in hemolysis in B. thuringiensis strain 407 Cry (data not shown). Sporulation assays, in which sporulation frequencies were established after 24 h of incubation in hydrolysate of casein tryptone medium, showed that the mutations did not significantly affect the ability of B. thuringiensis cells to sporulate (data not shown). To investigate whether the partially anaerobic conditions encountered in the insect hemolymph could prevent mutant strain growth, we assessed bacterial survival in LB medium incubated at 37°C without shaking. We found that mutations in yqgB and yqfZ did not affect B. thuringiensis growth in partial anaerobiosis (data not shown). We also assessed bacterial motility by recording, at 8-h intervals, the colony size of the strains spotted on 0.3% LB agar plates. The single mutant strains displayed wild-type motility (Table 3). However, the yqgByqfZ mutant was markedly affected in its motility because colony size after 24 h was only one-third that of the wild type. A similar defect was observed for the MP02 variant lacking the flhA gene, a mutation that has been shown to inhibit swarming motility (9). Overall, these results provided no evidence for a change in phenotype in these tests, with an effect on motility the only apparent phenotype obtained. Examination of the predicted amino acid sequences of YqgB and YqfZ showed them to be probable transmembrane and secreted proteins, respectively. The probable association of these proteins with the cell membrane is consistent with a role for these proteins in motility.
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TABLE 3. Results of motility assaysa
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FIG. 2. Growth curves of B. thuringiensis wild-type and mutant strains in LB medium at 37°C (A) and at 25°C (B).
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clpP1 against B. mori larvae infected via the hemocoel results essentially from a growth defect at 25°C. Indeed, B. mori, like all invertebrates, is a poikilotherm host, the internal temperature of which is not regulated. At the temperature at which the
clpP1 infection assays were conducted (25°C)assuming that this temperature is similar to that encountered in the B. mori hemolymphthe clpP1 mutant strain cannot grow and therefore displays an avirulent phenotype (6). The same may be true for the
yqgB
yqfZ mutant in B. mori. Consistent with this, in vivo bacterial counts demonstrated that the double mutant did not multiply to give high titers as rapidly as the wild-type strain.
Analysis of gene expression.
The phenotypic changes resulting from disruption of the B. thuringiensis yqgB and yqfZ genes led us to investigate the expression of these two genes at two different growth temperatures. Expression of the yqgB and yqfZ genes was analyzed by using plasmid transcriptional fusions with the lacZ reporter gene. Two fusions, pHT-yqgB'Z and pHT-yqfZ'Z, harboring the regions immediately upstream from the yqgB and yqfZ genes, respectively, were constructed and introduced into B. thuringiensis strain 407 Cry (Fig. 1). Transformants were cultured in LB medium at 25 and 37°C. ß-Galactosidase activity was determined at various stages of growth between 1 h before the onset of the stationary phase and 4 h after the onset of the stationary phase. The yqgB'-Z fusion was expressed during the exponential and stationary growth phases at both temperatures (Fig. 3). In contrast, no promoter activity was detected upstream from yqfZ because cells harboring the yqfZ'-Z fusion gave no ß-galactosidase activity at either of the temperatures tested (Fig. 3). This suggests that the transcription of yqgB and yqfZ is under control of the promoter located upstream from yqgB.
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FIG. 3. Expression of pHT-yqgB'Z ( ) and pHT-yqfZ'Z () transcriptional fusions in B. thuringiensis strain 407 Cry. Cells were grown in LB medium at 37°C (A) and at 25°C (B).
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yqgB
yqfZ mutant strain on semisolid agar was almost completely abolished. This lack of motility, together with the replication defect of this strain, may contribute to the inability of cells of the mutant strain to cause septicemia in vivo. Motility may enable the bacteria to adhere to and to colonize diverse insect tissues, which may act as alternative nutrient sources required by B. thuringiensis cells for a particular stage in the infection process.
This work was supported by a grant from Santé des Plantes et Environnement department-INRA (project no. 0071-2001-02: colonisation du biotope insecte par des bactéries pathogènes).
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