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Applied and Environmental Microbiology, September 2004, p. 5391-5397, Vol. 70, No. 9
0099-2240/04/$08.00+0 DOI: 10.1128/AEM.70.9.5391-5397.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Departamento de Biología, Universidad Autónoma de Madrid, Madrid,1 Departamento del Arroz, Instituto Valenciano de Investigaciones Agrarias, Sueca, Valencia, Spain2
Received 16 December 2003/ Accepted 10 May 2004
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Studies of the rice fields of Valencia, Spain, during the last 15 years have revealed abundant benthic and planktonic N2-fixing cyanobacteria at densities similar to those in Asian rice fields (20). Isotope experiments indicated that N fixed by cyanobacteria was readily and rapidly available to rice plants, which allowed a significant reduction in N fertilizer input without a loss of productivity (9). The photodependent nitrogen fixation ranged from 0.23 to 75.5 kg of N ha1 year1 in the absence of cyanobacterial blooms (22). However, this activity was not well correlated with the number of N2-fixing cyanobacteria in water and soil (22). A similar lack of correlation was reported for the rice fields of Uruguay (14). To explain this absence of association, the distribution of nitrogenase activity in the rice-soil system and the possible contribution of epiphytic cyanobacteria to rice plants and other macrophytes were studied. The most abundant macrophyte in these rice fields is the macroalga Chara vulgaris, which covers the soil surface almost completely during all or part of the cultivation cycle, depending on the density of rice plants.
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On the first day of each sampling campaign, ARA was measured in situ in 11 incubation chambers that included the unmodified whole system, which was comprised of one rice plant, the macrophyte Chara, the water layer, and the soil. Each component of the whole system was separated from the other components on subsequent days and independently incubated in situ or in vitro to assess nitrogenase activity. In vitro nitrogenase activity was determined in 0.5-liter transparent plastic chambers. These chambers were incubated in the field to maintain the natural temperature and illumination conditions. In the assays conducted in the dark, the plastic chambers were covered with aluminum foil. Additionally, in order to determine the daily variation in the ARA and its possible influence on the calculated rates, control assays were done in three chambers maintained under unmodified conditions in the same place for 4 days. In all cases, the chambers were aerated after completion of the assays in order to prevent accumulation of ethylene and to allow recovery from the exposure to acetylene. Gas samples were collected with double needles in 10-ml Vacutainer vacuum tubes, and their ethylene concentrations were measured by using a Shimadzu gas chromatograph equipped with a flame ionization detector and a Porapak N 80/100 column.
The acetylene reduction method was calibrated by using a bloom of Anabaena sp. that developed in the experimental field sites. Five replicate samples of the bloom were incubated in parallel with acetylene and 15N2 gas for 1 h under field conditions. Control flasks containing the Anabaena bloom with no 15N2 gas were also incubated in parallel. Anabaena samples were dried at 60°C, ground in a mortar, and analyzed for 15N enrichment by using a continuous-flow isotope ratio mass spectrometer.
Microscopic study.
The biomass of Chara was collected from the assay chambers in sterile Whirl Pak bags after the nitrogenase assays, weighed, fixed with 4% paraformaldehyde, and kept in the dark at 4°C until further analyses were performed. Portions of Chara were examined with a fluorescence microscope by using violet and green filters to identify fluorescence from chlorophyll and phycobiliproteins. Additionally, portions of fresh Chara were placed in petri dishes containing N-free BG11 medium. Biological material was incubated at 25°C with continuous light until the growth of cyanobacteria was confirmed with the fluorescence microscope.
Fixed portions of Chara were used for scanning electron microscopy. Fixed samples were washed in distilled water to eliminate any remaining paraformaldehyde. The samples were subsequently dehydrated with increasing concentrations of acetone, mounted on grids, and finally gold coated with an SC502 sputter coater. They were examined with a Philips XL30 scanning microscope at 20 kV. For confocal microscopy, fixed Chara was cut into small portions (length, around 0.5 mm), and these portions were then encased in 5% agarose cubes. Each of the cubes was then placed on a slide, covered with a coverslip, and sealed to avoid desiccation. Chara was observed with a Radiance 2000 confocal scanning laser microscope by using argon (488 and 514 nm) and helio-neon (543 nm) lasers.
Quantification of epiphytic cyanobacteria on C. vulgaris.
Nodal and internodal zones of fixed samples of Chara were separated and analyzed by using a fluorescence stereoscopic microscope with a green filter to quantify epiphytic cyanobacteria. Eleven samples were examined for each of the sampling periods in 2000, and at least 50 pictures per sample were taken with a Leica MZ 125 stereoscopic microscope. The pictures were processed with Leica Qwin image analysis software to determine the percentage of the Chara surface colonized by epiphytic cyanobacteria.
Epiphytic cyanobacteria on Chara were quantified with a fluorometer. This instrument was able to distinguish the chlorophyll a concentrations associated with four different algal groups in mixed samples. Three replicates each of 11 samples were examined for each of the sampling periods in 2000. Nodal and internodal zones were separated, weighed, and cut with a blade to prepare suspensions in 25 ml of distilled water. Pieces of Chara in the suspension were prevented from precipitating by magnetic stirring. Epiphytic cyanobacteria were then quantified by determining the cyanobacterial chlorophyll a concentration.
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FIG. 1. Acetylene reduction rates (means ± standard deviations; n = 11) associated with the different parts of the rice soil system at two sites in a Valencian rice field during the 1999 and 2000 crop seasons.
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The mean nitrogenase activity in Chara was significantly lower in the dark (22 ± 15 µmol m2 h1 for all sampling periods in 1999) than in the light (191 ± 99 µmol m2 h1 for all sampling periods in 1999), indicating that most of the N2 fixation associated with Chara was photodependent and probably due to epiphytic N2-fixing cyanobacteria on Chara.
Microscopic study.
The presence of N2-fixing cyanobacteria belonging to genera such as Calothrix, Nostoc, and Anabaena was evident after samples of Chara collected from the rice field were cultured in N-free BG11 medium (Fig. 2). Scanning electron micrographs showed that the Chara surface was covered with carbonates (Fig. 3A). Calcium- and magnesium-rich carbonate aggregates are typical of members of the Charophyta (5), whose common names, stoneworts and brittleworts, are derived from this characteristic. Filamentous cyanobacteria were present among the carbonate particles (Fig. 3B). Observation of C. vulgaris by fluorescence microscopy with a violet filter also revealed carbonate aggregates (Fig. 4A). Under a green filter, several types of unicellular and filamentous cyanobacteria were observed on the carbonate surface of this macrophyte (Fig. 4B); these cyanobacteria included different species of heterocystous cyanobacteria, such as Nostoc sp. (Fig. 4E) and Calothrix sp. (Fig 4F). However, the carbonate particles progressively disappeared when C. vulgaris was maintained under laboratory conditions (Fig. 4C). Under these conditions, cyanobacteria were almost entirely absent from the surface of Chara (Fig. 4D).
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FIG. 2. Optical micrographs of the main genera of N2-fixing cyanobacteria that grew in petri dishes after field samples of Chara were grown in N-free BG11 medium. (A) Anabaena sp. (B) Nostoc sp. (C) Calothrix sp. Scale bars = 10 µm.
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FIG. 3. Scanning electron micrographs of Chara. (A) Carbonate aggregates were abundant in Chara from field samples. Scale bar = 50 µm. (B) Filamentous epiphytic cyanobacteria attached to the Chara surface. Scale bar = 5 µm.
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FIG. 4. Micrographs of Chara viewed under the fluorescence microscope with a violet (A and C) or green (B, D, E, and F) filter. The violet excitation distinguished carbonate particles (green fluorescence) from Chara chloroplasts (red), while the green excitation distinguished cyanobacterial phycobiliproteins (bright red). Carbonate aggregates were abundant in Chara from field samples (A) but not when the organism was maintained in the laboratory (C). Epiphytic cyanobacteria were abundant on the Chara surface with carbonate particles (B) but were scarce in sections without carbonate (D). Heterocystous cyanobacteria were observed on Chara from field samples (E and F). The arrows indicate heterocysts. (A, B, E, and F) Scale bar = 40 µm. (C and D) Scale bar = 150 µm.
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FIG. 5. Micrographs of field samples of Chara viewed under the confocal scanning laser microscope. Microcolonies of unicellular and filamentous cyanobacteria were present on the surfaces of internodes (A) and verticiles (B) of Chara. The arrows indicate heterocysts. (A) Scale bar = 100 µm. (B) Scale bar = 70 µm.
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FIG. 6. Differential colonization of Chara by epiphytic cyanobacteria in field samples collected during the 2000 crop season in Valencian rice fields. The values are percentages of the surface area (means ± standard deviations; n = 54).
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TABLE 1. Concentrations of chlorophyll a from photosynthetic organisms associated with C. vulgaris in field samples collected during the 2000 crop season from Valencian rice fields
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We clearly showed the importance of Chara in nitrogen fixation in rice fields. The associated activity of this organism is an order of magnitude greater than the activity in the other parts of the system. This activity was different in different sampling periods and locations but always represented more than 45% of the global nitrogenase activity measured in the rice field; in some cases it represented more than 90%. These findings led to a new and unexpected view of nitrogen fixation in rice fields, since nitrogen fixation associated with macrophytes other than the rice plant has never been taken into consideration previously. If the observed rates of nitrogen fixation were extended to the total surface of the Valencian rice fields (13,500 ha), the amount of nitrogen incorporated through Chara and its associated nitrogen fixation would be 372 tons of N per crop season, which represents a significant N input for the ecosystem and must be taken into account for effective management and sustainability. Isotope experiments in Valencian rice fields showed that rice plants incorporated about 117 kg of N ha1 from the soil N pool, which was between 69 and 85% of the total N incorporated by fertilized plants (9). The amount of N fixed by epiphytic cyanobacteria on Chara in one crop period represented 23.5% of the N removed from the soil by the crop, indicating the agronomic potential for this macrophyte. After mineralization, this N should replenish the soil N pool and become available to rice plants in the same crop season or, more probably, in the next crop season, since most Chara mineralization takes place after the soil dries out at the end of the crop season.
Previous studies on epiphytic cyanobacteria in rice fields have been performed only in deep-water rice fields, where these organisms are associated with deep-water rice tillers (2, 34, 35). In shallow-water rice fields only benthic and planktonic communities have been considered (14, 20, 27). However, our results reveal the consistent presence of epiphytic cyanobacteria on the macrophyte Chara. On average, 7% of the Chara surface was covered by cyanobacterial microcolonies. Statistically significant differences were found in the distribution of epiphytic cyanobacteria on Chara plants. Cyanobacteria were more abundant in nodes than in internodes, probably because the nodes are more protected than the internodes as they are surrounded by verticiles. This morphology could help retain epiphytes, providing protection and physical support. Our results indicate that previous studies based on the quantification of cyanobacteria in soil and water may have underestimated the presence of these microorganisms in rice fields. Furthermore, from a limnological point of view, these findings reveal a previously unreported complex relationship among the different components of this agroecosystem. The biomass of epiphytic cyanobacteria on Chara seems to be sufficient to account for the observed rates of nitrogen fixation associated with Chara since when nitrogen fixation rates are expressed in terms of cyanobacterial chlorophyll concentrations, the values (on average, 57 ± 47 µmol mg of chlorophyll1 h1) are in the range of values usually found in laboratory cultures and in cyanobacterial blooms (e.g., 49 ± 37 µmol mg of chlorophyll1 h1 for an Anabaena bloom that developed in the rice field studied). Furthermore, the presence of heterocystous cyanobacteria on the Chara surface (Fig. 4E and F and 5) and the fact that N2 fixation associated with Chara was largely photodependent support the idea that the N2 fixation in Chara was mainly due to epiphytic cyanobacteria.
In addition to cyanobacteria, fluorometric measurements also demonstrated the presence of epiphytic diatoms on Chara, although the amounts were smaller than the amounts of cyanobacteria. This is consistent with results of studies in India that showed that a higher diversity of cyanobacteria than of diatoms was associated with cortical species of Chara (1). It could not be determined whether epiphytic green algae were present since fluorometric measurements do not allow these organisms to be discriminated from Chara.
Micrographic studies showed that field samples of Chara were covered by carbonate aggregates that arose from calcite precipitation during periods of intensive photosynthesis (15). When Chara was grown under laboratory conditions, carbonate particles progressively disappeared, probably as a result of a lower photon flux density and hence less photosynthetic activity in the laboratory than in the field. Chara plants were practically devoid of epiphytic cyanobacteria under these conditions. This suggests that the presence of calcium carbonate particles is related to the establishment of epiphytic cyanobacteria. Previous studies in Valencian rice fields revealed that water hardness and calcium content are positively correlated with the abundance of cyanobacteria in soil and water (20).
Chara is dominant not only in rice fields but also in many mesotrophic and eutrophic lakes and ponds (4, 8, 12), where the Chara biomass can be 478 g (dry weight) m2 (3). It has been shown that members of the Characeae may directly or indirectly affect nutrient cycling in shallow lakes due to their efficiency in nutrient trapping and because the induced calcite precipitation affects C, Ca, and P availability (15). It has also been reported that Chara beds may influence the redox potential at the sediment-water interface, promoting nitrification-denitrification losses (18). However, the possible influence of Chara on nitrogen fixation in lakes and ponds has never been addressed. It remains to be established whether these epiphytes are able to fix N2 in these ecosystems, as they can in rice fields. If this does prove to be the case, the association of Chara and epiphytic cyanobacteria would have a significant influence on the total input of N and would have to be considered in studies of the N cycle and for effective management and sustainability of these freshwater ecosystems.
This work was supported by grants AGF 1997-0303-CO2 and AGL 2001-1626-CO2 from the Spanish Ministry of Science and Technology.
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