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Applied and Environmental Microbiology, January 2005, p. 214-219, Vol. 71, No. 1
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.1.214-219.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
School of Agricultural Biotechnology, Seoul National University, Seoul,1 Department of Environmental Science and Engineering, Gwangju Institute of Science and Technology, Gwangju,3 Research and Development Center, Takara Korea Biomedical Inc., Gyeonggi-Do, Korea,4 College of Life Science, Agricultural University of Hebei, Baoding, China2
Received 20 May 2004/ Accepted 16 August 2004
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After ingestion, isoflavones are subjected to diverse metabolic processes in the intestinal tract prior to absorption. The metabolites of daidzein include dihydrodaidzein, tetrahydrodaidzein, equol, and O-desmethylangolensin, and these metabolites have been detected in human urine (9, 18, 19). The crucial role of gut microflora in the metabolism of isoflavones in human beings has also been previously explored (9). In vivo studies proved that bacteria in the gastrointestinal tract play an important role in determining the magnitude and pattern of isoflavone bioavailability (30). Setchell et al. (28) demonstrated that incubation of textured vegetable protein with human fecal bacteria resulted in the formation of equol, which among isoflavone metabolites was known to be the most effective in stimulating an estrogenic response (6, 25). However, only 30 to 40% of the population can produce equol from daidzein (25, 27). In vitro studies proved interindividual differences in the bacteria responsible for equol production. Equol is a chiral molecule that can exist in two enantiomeric forms with potentially different biological activities (22). A recent study demonstrated that the binding affinity of a natural-form S-equol to estrogen receptor ß is 13 times higher than that of R-equol and 2 times higher than that of (±)equol, whereas R-equol showed a preference for binding to estrogen receptor
which is 4 times higher than that of S-equol and 2 times higher than that of (±)equol (23).
In recent years, there have been attempts to isolate bacterial strains from human feces that are able to metabolize (iso)flavones under anaerobic conditions (7, 15, 16, 26). Hur et al. (16) isolated an intestinal bacterium, Clostridium sp. strain HGH6, that is capable of reducing daidzein to dihydrodaidzein, but further metabolism to tetrahydrodaidzein or equol did not occur. Although extensive research has been performed to search for a single bacterium capable of producing equol from isoflavones, there have been no reports to date which describe a specific bacterium in relation to production of equol from tetrahydrodaidzein or dehydroequol (18) (Fig. 1).
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FIG. 1. Proposed metabolic pathway leading to formation of equol from daidzein in a urine sample (modified from reference 18).
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Chemical synthesis of dihydrodaidzein and tetrahydrodaidzein.
Catalytic transfer hydrogenation was performed as described by Krishnamurty and Sathyanarayana (20) with minor modifications. Daidzein (0.26 g) in 20 ml of methanol was prepared in a round flask containing 0.255 g of Pd/C and 0.252 g of ammonium formate. The reaction mixture was refluxed for 2 h at 65°C. The solutions were monitored for the production of dihydrodaidzein and tetrahydrodaidzein by HPLC. After reaction completion, the mixture was cooled down and the Pd/C was filtered off via a 0.45 µm-pore-size filter, followed by evaporation with a SpeedVac AES1010 (ThermoSavant, New York, N.Y.). The residue was redissolved in 100% methanol and purified with Sephadex LH20 (Amersham Pharmacia Biotech, Amersham, United Kingdom). The samples purified with the LH20 column were evaporated to dryness with the SpeedVac AES1010. The residue was redissolved in methanol to separate and isolate products by using a Thermo Prep-HPLC (ThermoSeparation Products, Riviera Beach, Fla.). The reaction products were subjected to analysis by electron impact ionization mass spectrometry (EI-MS) and nuclear magnetic resonance (NMR) spectroscopy. The EI-MS and 1H and 13C NMR spectra of a racemic mixture of dihydrodaidzein and tetrahydrodaidzein were identical to those reported previously (9, 29).
Bacterial isolation and identification.
A human fecal sample from a healthy female volunteer was collected in 5 ml of BHI liquid medium which was covered with 2 ml of sterilized mineral oil. The fecal sample was diluted serially from 101 to 108 in BHI liquid medium. One hundred microliters of each diluted solution was spread on BHI agar plates and incubated in an anaerobic chamber (5% CO2, 10% H2, and 85% N2) at 37°C for 24 h. More than 1,000 colonies were isolated and maintained on BHI agar plates. Over 100 pools, which were composed of 10 randomly combined single colonies, were incubated in BHI liquid medium containing 100 µM daidzein and 100 µM dihydrodaidzein to find positive pools capable of metabolizing the substrates. From the positive pools, each single colony was individually incubated with daidzein or dihydrodaidzein to find specific the bacterial colony(ies) responsible for the conversion of daidzein or dihydrodaidzein. Only one bacterial strain, named strain Julong 732, showed the capacity to convert dihydrodaidzein to equol under anaerobic conditions. 16S rRNA gene sequence analysis was used to identify strain Julong 732. Strain Julong 732 was grown in the 5 ml of BHI liquid medium in an anaerobic chamber for 2 days. One milliliter of the culture was centrifuged at 16,000 x g (centrifuge 5415D; Eppendorf, Hamburg, Germany) for 5 min. The supernatant was discarded, and 30 µl of NaOH (0.05 N) was added to the tubes. The tubes were incubated in boiling water for 15 min for extraction of genomic DNA. The 16S rRNA gene from chromosomal DNA of Julong 732 was amplified by PCR with the universal primers 27F (AGAGTTTGATCMTGGCTCAG) and 1492R (GGYTACCTTGTTACGACTT) (20). The PCR program used for amplification was as follows: 94°C for 5 min; followed by 29 cycles consisting of 94°C for 1 min, 55°C for 30 s, and 72°C for 1 min 30 s; and a single final extension step consisting of 72°C for 10 min. The PCR products amplified from genomic DNA were purified with an AccuPrep gel purification kit (Accurate Chemical Science Corp., Westbury, N.Y.). The ToPo-cloning kit (Invitrogen, Carlsbad, Calif.) was used for ligation and transformation. Complete nucleotide sequences (1,429 bp) were obtained by using an ABI 377 XL upgrade DNA sequencer (Perkin-Elmer, Boston, Mass.) and software provided by the manufacturer. Sequence similarity searches were performed with the BLAST program. The sequence information was then imported into the PHYDIT program (10) for assembly and alignment. The sequence of the 16S rRNA gene (1,429 bp) for strain Julong 732 was compared to sequences from type strains held in the GenBank database. Nucleotide substitution rates were calculated, and phylogenetic trees were constructed by the neighbor-joining method (24). This bacterial strain has been deposited in the Korean Culture Center of Microorganisms with deposit number KCCM-10490.
Production and purification of the metabolite produced from a racemic mixture of dihydrodaidzein by strain Julong 732.
For preparation of the metabolite in large quantities, bacterial strain Julong 732 was grown in a 500-ml flask containing 200 ml of BHI liquid medium under anaerobic conditions for 2 days. A dihydrodaidzein stock solution (40 mM in N,N-dimethyl formamide) was added to the 2-day-old culture broth at a final concentration of 0.8 mM. The bacterial culture was then continuously incubated under anaerobic conditions for 1 week. The culture medium was extracted with an equal volume of ethyl acetate three times, followed by evaporation to dryness with an NE New rotary vacuum evaporator (Eyela, Tokyo, Japan). The dried metabolite was redissolved in 100% methanol and purified on an LC-918 recycling preparative HPLC (Analytical Industry Co., Tokyo, Japan).
HPLC.
Analytical HPLC profiles were obtained with a Varian ProStar HPLC (Varian, Walnut Creek, Calif.) equipped with a photodiode array detector and a C18 column (5-µm particle size, 4.6 by 250 mm; Waters, Fullerton, Calif.). The mobile phase was composed of 10% acetonitrile solution in water (solution A) and 90% acetonitrile solution in water (solution B), which were buffered with 0.1% acetic acid. The elution program was as follows: solution B was run at 30% for 15 min, linearly increased to 50% for 10 min, and then linearly increased to 70% for 5 min. The flow rate was 1 ml/min. All samples were monitored at 270 nm. UV spectra of the peaks were recorded from 200 to 400 nm. For the analysis of enantioisomers, a Sumi Chiral OA-7000 (5-µm particle size, 4.6 by 250 mm; Sumika Chemicals, Osaka, Japan) was used with a mobile phase composed of 40% acetonitrile in 20 mM potassium phosphate buffer (pH 3.0). The isocratic elution program with the mobile phase lasted for 35 min. The flow rate was 1 ml/min, and UV spectra of the peaks were recorded from 200 to 400 nm. For the purification of chemically synthesized dihydrodaidzein and tetrahydrodaidzein, a Thermo HPLC P2000 instrument (ThermoSeparation Products) equipped with an UV photodiode array 100 detector (Dionex Corp., Sunnyvale, Calif.) and a Spherisorb C18 reverse-phase column (5-µm particle size, 10 by 250 mm; Waters) was used. The mobile phase, composed of 60% methanol in 0.1% acetic acid solution, was used in an isocratic mode, running for 40 min. The injection volume was 50 to 100 µl, based on the concentration of the products, and the flow rate was 2 ml/min. The responding peak solutions were collected and evaporated to dryness with the AES1010 automated environmental SpeedVac (ThermoSeparation Products). For preparative separation of the enantiomeric R- and S-equols, 200 milligrams of a racemic mixture of equol was dissolved in 2 ml of acetonitrile (100%). Thirty microliters of the equol solution was injected into a Thermo HPLC P2000 instrument (ThermoSeparation Products) equipped with a Prep-Sumi-Chiral OA-7000 column (8 x 250 mm; Sumica Chemicals, Osaka, Japan). The mobile phase in the isocratic mode consisted of 40% acetonitrile in 20 mM potassium buffer (pH 3.0) at a flow rate of 2.0 ml/min. The peak solutions for R- and S-equols were collected individually and evaporated to dryness with the AES1010 automated environmental SpeedVac. As a result, 86.9 mg of R-equol and 82.6 mg of S-equol, respectively, were obtained. For the preparative purification of the biological metabolite produced from dihydrodaidzein by strain Julong 732, an LC918 recycling preparative HPLC equipped with a JAIGEL-W251 polymeric gel filtration column (20 by 500 mm; Analytical Industry) and an RI-50 detector (Analytical Industry) was used. The mobile phase in the isocratic mode was 100% methanol at a flow rate of 3 ml/min, and the injection volume was 3 ml. The corresponding peak was collected and evaporated to dryness with the AES1010 automated environmental SpeedVac (ThermoSeparation Products).
EI-MS.
EI-MS was done with a JMS-AX50510A mass spectrometer (JEOL Co. Ltd., Tokyo, Japan) in positive mode. The source temperature was 250°C, and the ionization voltage was 70 eV. An electron multiplier of 1.2 kV (regular spectrum type) was used.
NMR Spectrometry.
1H and 13C NMR spectra in acetone-d6 were obtained at 400 MHz on a Jnm-La NMR spectrometer (JEOL Co. Ltd., Akishima, Japan) at a temperature of 296 K. For 1H NMR analysis, 16 transients were acquired with a 3-s relaxation delay, using 32,000 data points. The 90° pulse was 11.2 µs, with a spectral width of 100 ppm. The 13C NMR was obtained with a spectral width of 200 ppm, collecting 64,000 data points. The 90° pulse was 10.0 µs.
Chirality studies of biosynthesized equol.
The specific rotation ([
]D) in ethanol was obtained with a polarimeter (Autopol III; Rudolph Research Analytical, Flanders, N.J.). Measurements of circular dichroism (CD) in ethanol were recorded on a J-715 spectrometer (Jasco Corp., Tokyo, Japan). The melting point was obtained with a differential scanning calorimeter (DSC Q1000; TA Instruments, New Castle, Del.). Differential scanning calorimeter analysis was done from 70 to 300°C at a heating rate of 10°C/min.
Kinetics of biotransformation of dihydrodaidzein and its derivatives by strain Julong 732.
Strain Julong 732 was tested for biotransformation activity with the isoflavones daidzein, dihydrodaidzein, tetrahydrodaidzein, S- and R-equol, and genistein while the strain was growing in a test tube containing 2 ml of BHI. Strain Julong 732 (optical density at 600 nm [OD600], 0.03) was inoculated into medium containing each compound at 400 µM. The anaerobic bacterial culture of strain Julong 732 containing dihydrodaidzein was sampled daily for 5 days to study biotransformation kinetics. Biotransformation of the rest of the compounds was analyzed one time after 4 days of incubation. All experiments were performed in triplicate.
Nucleotide sequence accession number.
The full sequence (1,429 bp) of the 16S rRNA gene of strain Julong 732 has been deposited in GenBank (accession no. AY310748).
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FIG. 2. Dendrogram showing the phylogenetic affiliation of strain Julong 732.
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FIG. 3. HPLC elution profile of metabolism of dihydrodaidzein by strain Julong 732 in BHI liquid medium under anaerobic conditions. The insets show UV spectra of dihydrodaidzein (DHD) and a metabolite of dihydrodaidzein and the EI-MS (m/z) spectrum of the metabolite of dihydrodaidzein. AU, absorbance units.
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]24D) of biosynthesized equol was 23.0°. Since S-form equol was reported to have a negative [
]D value ([
]548 = 21.5° in chloroform) (8), the equol biosynthesized by strain Julong 732 was determined to be that of the S form. The CD spectrum of S-form equol (Fig. 4) in ethanol exhibited positive and negative cotton effects in the informative region of 200 to 300 nm. S-form equol displayed a high-amplitude positive cotton effect at 237 nm and a negative cotton effect at 285 nm. The melting point of S-form equol was 190.8°C, consistent with previously reported data for S-form equol (189 to 190.5°C) which was isolated from heartwood of Millettia pendula (8). The melting points of R- and S-equols which were separated from racemic-mixture equol were 188.9 and 190.3°C, respectively.
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FIG. 4. HPLC elution profiles on a Sumi Chiral OA-7000 column and CD spectra of racemic-mixture equol (A) and S-equol (B) produced from dihydrodaidzein by strain Julong 732 under anaerobic conditions. AU, absorbance units.
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FIG. 5. Bacterial growth (A) and biotransformation kinetics of dihydrodaidzein while strain Julong 732 was growing in BHI medium (B). , dihydrodaidzein with strain; , equol produced from dihydrodaidzein by strain; , dihydrodaidzein without strain. Error bars indicate standard deviations.
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Strain Julong 732, which was isolated from a human intestine, was able to convert the starting compounds dihydrodaidzein and tetrahydrodaidzein to S-equol under anaerobic conditions. However, it could not reduce daidzein to the corresponding dihydrodaidzein and tetrahydrodaidzein or to dehydroequol under anaerobic conditions as shown in Fig. 1. In addition, strain Julong 732 could not cleave the C ring of daidzein, which would result in the formation of O-desmethylangolensin or 2-(4-hydroxyphenyl)propionic acid (24, 27). Strain Julong 732 stereoselectively produced S-equol (100% e.e.) from enantiomeric mixtures of dihydrodaidzein. Enantioselectivity of strain Julong 732 toward the parent compound R- or S-dihydrodaidzein could not been determined because R- or S-dihydrodaidzein was abiotically equilibrated in the reaction medium or water at pH 7.0, most likely through a tautomerization reaction. Therefore, there are two possibilities to explain S-equol (100% e.e.) production from dihydrodaidzein. One is that strain Julong 732 has an enantioselective preference to reduce S-dihydrodaidzein to S-equol. The other is that strain Julong 732 has an enantioselective preference to reduce R-dihydrodaidzein to R-equol, which in turn is converted to S-equol by racemase activity. However, strain Julong 732 did not show racemase activity to transform S-equol to R-equol or vice versa. Considering these reactions, stereoselective production of S-equol might be caused by the enantioselective preference of strain Julong 732 for the starting compound S-dihydrodaidzein. Additionally, strain Julong 732 reduced tetrahydrodaidzein to S-equol but not to dehydroequol, which was found in urine samples and was most likely a metabolite produced from tetrahydrodaidzein. However, the amount of S-equol produced from tetrahydrodaidzein was significantly small compared to that produced from dihydrodaidzein. As previously reported by Hur et al. (16), who isolated an intestinal bacterial strain, Clostridium sp. strain HGH6, that partially converted daidzein to dihydrodaidzein which was not further reduced to tetrahydrodaidzein or equol, strain Julong 732 did not show the whole intestinal pathway of daidzein as suggested by Joannou et al. (18). This suggests that more than one bacterial species may be involved in the completion of the metabolic cycle of daidzein to S-equol. Therefore, it may be possible to produce more phytoestrogenic and natural S-equol from daidzein when the intestinal microbial community consists of Clostridium sp. strain HGH6 and strain Julong 732. This is the first report of an isolated human intestinal bacterium capable of metabolizing a racemic mixture of dihydrodaidzein to S-equol with 100% enantiomeric excess.
We are grateful to Min Ye, Department of Pharmacognosy and Biotechnology, Peking University, for helpful discussions. We thank R. A. Kanaly at the UNU and GIST Joint Program on Science and Technology for Sustainability, Gwangju, Korea, for his comments on the manuscript.
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