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Applied and Environmental Microbiology, October 2005, p. 5685-5691, Vol. 71, No. 10
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.10.5685-5691.2005
and
Amy O. Charkowski2
Produce Safety and Microbiology Research Unit, WRRC/ARS/USDA, 800 Buchanan St., Albany, California 94710,1 Department of Plant Pathology, Russell Laboratories, 1630 Linden Dr., University of Wisconsin-Madison, Madison, Wisconsin 537062
Received 19 August 2004/ Accepted 28 April 2005
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Bacterial attachment to plants has predominantly been studied for its role in virulence of plant pathogens. Recently, the surface interactions between bacteria and plant are being studied prior to the development of disease symptoms. Agrobacterium tumefaciens, which causes tumorigenic diseases in many plant species, requires a Ca2+-dependent adhesin (35), a repertoire of proteins encoded by att genes (22, 23), exo- and capsular polysaccharides (30), and cellulose fibrils (21, 22) to attach to roots. Other rhizosphere inhabitants also utilize cellulose (5) and fimbriae (18, 39, 40). However, only one study has begun to address the fundamental questions of what allows animal bacterial pathogens to associate with plants initially and how they remain attached (14). These experiments showed that attachment of Listeria monocytogenes to radish tissue was dependent on flagellar motility.
The intent of the present study was to identify genes required for attachment of S. enterica serovar Newport to plant tissue. We chose to use alfalfa sprouts as a model system for attachment because S. enterica has been isolated from alfalfa sprouts and seeds and caused numerous salmonellosis outbreaks in association with ingestion of alfalfa sprouts. In addition, alfalfa sprouts grow relatively quickly, lending themselves well to in situ experiments, and sprouts usually are not cooked before consumption. Therefore, this system is relevant to public health.
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TABLE 1. Strains used in this study
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Alfalfa sprout attachment and colonization assays.
All experiments were performed at least twice at room temperature. Alfalfa seeds were surface sanitized with 3% calcium hypochlorite as previously described (8) and sprouted in petri plates (50 seeds/plate) with 25 ml of irrigation water that was exchanged daily for sterile water. Seeds and sprouts were constantly shaken at 40 rpm in petri plates or tubes. For individual strain attachment assays, overnight bacterial streak cultures were suspended in sterile water by sterile swab to an optical density at 600 nm of 0.2 and diluted to a concentration of
104 CFU/ml. Sanitized seeds were incubated in the bacterial suspension for 1 h, and then the suspension was replaced with sterile water. Individual seeds/sprouts were homogenized in 500 µl of phosphate buffer solution (34), plated on LB agar, incubated overnight at 37°C, and bacterial cells were enumerated to determine the number of attached cells.
Selection of attachment mutants.
To enrich for attachment mutants, sprouts were grown for 3 days prior to inoculation. Fifty-three-day-old sprouts were placed in a conical 50-ml tube and a pool of random mini-Tn10:lac:kan insertion mutants of S. enterica Newport were added. The mutant pool that had been grown overnight at 37°C in LB containing kanamycin was diluted in sterile water to an optical density at 600 nm of 0.2 and diluted to a concentration of
106 CFU/ml. The sprouts and bacteria were incubated for 4 h at 25°C and shaken in an orbital shaker at 40 rpm. The cell suspension from this tube was poured into a second sprout-containing tube and incubated for another 4 h. After the second 4-h incubation, the cell suspension was transferred to a sterile flask and 20 ml of LB medium plus kanamycin was added to the sprout irrigation water. This enriched culture was incubated overnight and then used to repeat the attachment and regrowth of unattached cells. In this fashion, the selection procedure was continued for 10 consecutive days. On each day, the numbers of S. enterica Newport cells in the cell suspension was monitored by dilution plating on SS agar. After 10 days, 600 colonies were chosen and screened individually for attachment to sprouts.
Statistics.
Where indicated, Student t tests were performed to determine the significance between the average populations of strains per alfalfa sprout.
Growth assay.
To determine whether a nonattaching phenotype was due either to a reduced ability to attach or colonize plant tissue or to a growth or survival defect, the growth of planktonic mutant and wild-type cells in the sprout irrigation water was measured. Fifty-three-day-old sprouts were placed in a conical tube, bacterial cells were added (
104 CFU/ml), and the sprouts and bacteria were incubated for 4 h at 25°C. An aliquot of water was sampled every hour for 4 h, and bacterial populations were enumerated on SS plates.
Cloning and sequencing of the regions surrounding mini-Tn10:lac:kan insertions.
To establish that each strain contained only one insertion, chromosomal DNA was digested with HindIII and screened by Southern blot hybridization with a probe containing the kanamycin resistance gene of mini-Tn10:lac:kan. The region upstream of the insertions was cloned by digestion of the chromosomal DNA with EcoRI, ligation into pBluescript II KS(+), and selection in E. coli TOP10 (Invitrogen, Carlsbad, CA). The region upstream of the insertions was sequenced by using the primer LBT, which is complementary to sequence contained in the transposon (2). Sequences were compared to the published sequences of S. enterica Typhimurium (GenBank accession no. NC_003197) and S. enterica serovar Typhi (GenBank accession no. NC_004631) by a BLAST search (3).
Quantitative reverse transcription-PCR (qRT-PCR).
Alfalfa seeds were surface sanitized and inoculated as described above. To harvest planktonic cells for RNA extraction, sprout irrigation water was removed, the bacterial cells were pelleted by centrifugation for 45 min at 45,440 x g and 4°C due to the ephemeral nature of the bacterial pellet, and the supernatant was discarded. To harvest bacterial cells attached to plant tissue for RNA extraction, alfalfa sprouts were rinsed three times with 20 ml of sterile water and placed in a 50-ml conical tube with 20 ml of sterile water. The tubes were sonicated for 1 min at 250 W in a water bath sonicator. The detached cells were pelleted as described above, the supernatant was discarded, and the cells were resuspended in 1.5 ml of RNAprotect Bacterial Reagent (QIAGEN, Valencia, CA). Total RNA was extracted with RNeasy kit (QIAGEN) according to the manufacturer's instructions. After elution, the tubes containing the extracted nucleic acids were heated 4 min at 95°C and immediately transferred to ice water. Contaminating DNA was removed by using Ambion DNA-free (Ambion, Austin, TX). The RNA was stored at 80°C.
qRT-PCR primers (Operon; QIAGEN) are listed in Table 2, along with their target gene and annealing temperatures. qRT-PCRs were prepared as follows (final volumes per sample): 25 µl of 2x SYBR Green qRT-PCR master mix (Stratagene, La Jolla, CA), 2 µl of each primer (0.4 mM), 0.5 µl of fluorescein (10 pM), 0.125 µl of StrataScript RT/RNase block enzyme mixture (Stratagene), 1 µl of RNA template (
200 ng of total RNA), and 19.375 µl of RNase-free water. A four-step RT-PCR protocol was used for the iCycler iQ (Bio-Rad, Hercules, CA): (i) the addition of reverse transcriptase (30 min at 45°C); (ii) denaturation (10 min at 95°C); (iii) an amplification and extension program repeated 40 times (30 s at 95°C, 45 s at appropriate annealing temperature, and 30 s at 72°C, with a single fluorescence measurement); and (iv) a melting curve program of 1 min at 95°C and 1 min at 55°C, followed by an increase from 55 to 80°C, with a heating rate of 5°C per 10 s, and a continuous fluorescence measurement. PCR products were confirmed by sequence analysis.
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TABLE 2. PCR primers and annealing temperatures used in this study
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Each of the 600 strains was tested individually for the ability to attach to sprouts by the assay used originally to select them. Thirty-two strains were reduced at least 1 log unit compared to the wild-type strain and were analyzed by Southern blot hybridization to verify that each strain had a single unique insertion (not shown). The regions upstream of the insertions were cloned and sequenced, and BLAST (3) was used to compare the sequences to the complete genome sequences of S. enterica serovars Typhimurium and Typhi, as well as the NCBI sequence database. Of the 20 unique insertions identified, 65% were located in uncharacterized genes, and two were in sequences not found in the NCBI database and thus might represent sequences unique to S. enterica Newport (Table 3). The disrupted genes were of diverse functions, including those involved in growth, regulation, and chemotaxis, as well as those encoding surface proteins and those associated with bacteriophage. Future work will include complementation and characterization of the mutants not addressed here.
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TABLE 3. Identification of S. enterica Newport regions disrupted by mini-Tn10:lac:kan insertions
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FIG. 1. Adhesion of S. enterica Newport to alfalfa sprouts. (A) Cells of the S. enterica Newport rpoS mutant (JDB 279) and Tn10:lac:kan insertion in the agfD/agfB intergenic region (JDB 287) were recovered from 3-day-old alfalfa sprouts and compared to wild-type S. enterica Newport after 4-h adhesion assays. The data are averages of three experiments. (B) Cells of JDB 279 recovered from alfalfa sprouts 24 and 48 h postinoculation compared to wild-type S. enterica Newport. (C) Cells of JDB 279 and JDB 423 recovered from alfalfa sprouts 24 h postinoculation compared to wild-type S. enterica Newport. The data for panels B and C are representative experiments with two internal replicates and five sprout samples taken from each. The standard deviations are represented as error bars in all panels.
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FIG. 2. Phenotypic characterization of S. enterica wild-type (section 1), JDB 287 (section 2), JDB 279 (section 3), and JDB 423 (section 4) Newport strains grown on Congo red indicator media (A) and LB no salt containing calcofluor (B) for 48 h at 28°C.
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TABLE 4. Average expression of S. enterica Newport genes relative to rplU in cells on LB agar, in sprout irrigation water, or attached to alfalfa sprouts at 24 h postinoculation
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agfA, or
agfB strains. After 4 h, the populations of wild-type and
agfA were similar (P = 0.9), whereas
agfB was reduced by 2 logs (Fig. 3A; P < 0.05). To determine the role of curli in attachment and colonization, seeds were inoculated with each strain for 1 h and replaced with sterile water; at 24 h and at 48 h postinfection, the populations of the wild-type and
agfA strains were similar (P = 0.9), whereas the
agfB strain was reduced by 1 log (Fig. 3B; P < 0.05). These results are similar to those with both JDB 287 and JDB 279 in that the adhesion of S. enterica was not eliminated with disruption of either agfA or agfB. Deletion of agfB affected initial attachment, as well as attachment and colonization over time, whereas deletion of agfA did not. This was an unexpected result since neither mutant of agfA or agfB displays an aggregative phenotype on agar plates under curli-permissible conditions (confirmed in the present study) or aggregative fimbriae when examined under electron microscopy (41).
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FIG. 3. Adhesion of S. enterica serovar Enteritidis to alfalfa sprouts. (A) Attachment of cells to 3-day-old alfalfa sprouts in a 4-h attachment assay; (B) attachment and colonization 24 h postinoculation. The data are representative experiments with 10 sprout samples taken for each strain. The standard deviations are represented as error bars in all panels.
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The importance of curli may also be supported by previous studies of S. enterica and EHEC attachment to alfalfa sprouts (8). We observed differences between the abilities of S. enterica and EHEC to attach to sprouts; the number of S. enterica cells that can attach was similar to plant-associated bacteria, whereas EHEC could easily be rinsed away. We hypothesized that the differences observed in the ability of EHEC and S. enterica to adhere could be attributed to the lack of curli and cellulose production in EHEC. The EHEC strains used for these studies did not encode a functional csgD (agfD in S. enterica); the gene that encodes the positive regulator for curli and cellulose, due to single-base-pair mutations in the promoter (38). Moreover, nonpathogenic E. coli that exhibited similar ability to attach to alfalfa sprouts as S. enterica also tested positive for curli production (J. D. Barak et al., unpublished observations), suggesting bacteria that can produce curli are more likely to attach at high populations to plant tissue.
The role of cellulose in attachment and colonization of S. enterica to plants was not studied directly by mutant analysis; however, neither JDB 287 nor JDB 279 produced cellulose, whereas the S. enterica Enteritidis curli mutants did. However, comparison of the ability to attach or colonize plant tissue revealed very little difference between JDB 287, JDB 279 (Fig. 1A),
agfA, and
agfB (Fig. 3) strains, suggesting a limited direct role for cellulose in these studies.
rpoS is required for S. enterica attachment to plants.
Another previously characterized gene identified in our random screen was rpoS, which was also reduced in attachment by one log (Fig. 1A). In S. enterica, rpoS, the general stress response regulator sigma factor, is a global regulator required for Salmonella virulence in animals. RpoS plays an important role in biofilm formation (27), as well as in the regulation of agfD (31), other adhesins (28), and other genes (16, 19).
The role of rpoS in S. enterica attachment to plant tissue appeared to be during initial attachment, similar to its role in biofilm formation (1). When sprout colonization was monitored over time, the populations of the rpoS mutant JDB 279 on sprouts were reduced by at least 1 log compared to the wild type at 24 h postinoculation but reached levels similar to those of the wild type by 48 h postinoculation (Fig. 1B), suggesting that RpoS regulates mechanisms required for initial attachment to plant tissue. When the rpoS mutation in JDB 279 was complemented on a plasmid (pJDB1), the ability to attach 24 h postinoculation was restored to wild-type levels (Fig. 1C). A strain carrying plasmid vector control did not restore attachment. To demonstrate that this nonattaching phenotype was due to a reduced ability to attach or colonize plant tissue and not a growth or survival defect, growth curves of planktonic mutant and wild-type cells in the sprout irrigation water were monitored. The numbers of mutant and wild-type cells were indistinguishable, indicating that the defect was in attachment to plant tissue (not shown).
The JDB 279 strain was also defective in curli and cellulose production, as demonstrated by the lack of production on agar plates at permissive conditions (Fig. 2A and B, section 3). When the rpoS mutation in JDB 279 was complemented on a plasmid (pJDB1), however, the ability to produce curli and cellulose was not restored (Fig. 2). This was unexpected, since rpoS is known to regulate curli production through the transcription of agfD (10). However, since rpoS regulates multiple systems and rescuing JDB279 by complementing it with the plasmid-encoded rpoS allowed for wild-type levels of sprout attachment, we hypothesize that S. enterica utilizes other adhesins or mechanisms in addition to curli to attach to plants. This hypothesis is further supported by our sprout attachment data for JDB 287, JDB 279, and the S. enterica Enteritidis agfA and agfB mutants that showed that no strain was completely deficient in attachment but only reduced. Multicellular behavior in S. enterica involves uncharacterized factors in addition to curli and cellulose. These molecules form a close bacterial network embedded in a matrix of acidic polysaccharides (36). Deletion of rpoS in S. enterica Typhimurium has minimal effect on biofilm formation though curli are absent (32), suggesting other adhesins or mechanisms are utilized for initial attachment and biofilm development.
Our sprout attachment data support the conclusion that RpoS contributes to S. enterica attachment to plants, perhaps due to the disruption of adhesin regulation in the rpoS mutant. A similar requirement for RpoS in plant-microbe interactions is also found in plant pathogens. For example, in the plant pathogen Erwinia carotovora subsp. carotovora, rpoS is needed for survival in the competitive environment of the leaf surface during stress conditions (4). An E. carotovora subsp. carotovora rpoS mutant was unable to colonize tobacco plants to similar populations as had the wild type, suggesting a role for rpoS in epiphytic fitness on plants. Furthermore, a role for rpoS in colonization of roots has been suggested for Pseudomonas putida (24) where rpoS mutant strains are reduced in their ability to colonize bean and cucumber seedlings.
Common themes between animal and plant pathogens.
The rise in incidence of outbreaks caused by S. enterica-contaminated produce illustrates the importance of understanding the fundamental mechanisms of S. enterica survival, growth, and virulence as they relate to the food supply. This is the first report to begin to study the details of the molecular interactions of S. enterica with plant tissue. The results of the present study reveal that some S. enterica genes required for virulence in animals are also required for attachment to plant tissue. These results add to the common themes and strategies for bacterial fitness in association with eukaryotic hosts that are emerging in animal and plant pathogens (7, 37) by demonstrating that curli and gene products regulated by rpoS are required for S. enterica attachment to plant tissue.
Sixty-five percent of the S. enterica genes identified as potentially contributing to bacterial adhesion to plant tissue have no previously reported function. This demonstrates the importance of investigating bacterial interactions with secondary hosts, such as plants, since many S. enterica genes may play a larger role in survival in the environment or on secondary hosts than they do in virulence in animal model systems. Understanding the functions of these genes is important since the role on secondary hosts or in the environment throughout the disease cycle may be crucial for intervention strategies or disease reduction. For our initial work, we focused on two strains with mutations in genes of known functions, both to confirm that our selection worked as expected and to tie the functions of these genes in bacterial interactions with a secondary host to what is already known about the regulatory roles of these genes in growth media and in animal hosts. Future studies will examine the many strains isolated with mutations in genes of unknown function.
We thank William Kay for the gift of the S. enterica serovar Enteritidis strains. We thank Jeff Palumbo for critical discussion of the manuscript and William Miller for help with figure production.
Present address: Biodefense Division, Lawrence Livermore National Lab, 7000 East St., Livermore, CA 94550. ![]()
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(S)-regulated genes in Salmonella enterica serovar Typhimurium. J. Bacteriol. 182:5749-5756.
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