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Applied and Environmental Microbiology, November 2005, p. 6564-6570, Vol. 71, No. 11
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.11.6564-6570.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Instituto de Productos Lácteos de Asturias, CSIC, Carretera de Infiesto s/n, 33300 Villaviciosa, Asturias, Spain
Received 25 May 2005/ Accepted 16 June 2005
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Bile salts are synthesized in the liver from cholesterol and secreted as amino acid conjugates into the duodenum, where they facilitate fat absorption. Since these compounds are toxic for microbial cells, the autochthonous gastrointestinal microbiota must have developed strategies to defend themselves against the toxic action of bile, although these mechanisms still remain poorly understood.
Some dietary carbohydrates not digested in the upper gastrointestinal tract can act as substrates for bacterial fermentation in the colon (8). Among these carbohydrates, those that are selectively fermented by beneficial microorganisms are generally known as prebiotics (12). The ability to degrade oligo- or polysaccharides has been related to the presence in the cell of the corresponding glycoside-hydrolyzing activities (13, 17, 29, 42). In bifidobacteria, the fermentation of hexoses released from oligo- or polysaccharides occurs by the D-fructose 6-phosphate shunt, whose characteristic key enzyme, fructose 6-phosphate phosphoketolase (6, 24), is not present in other gram-positive intestinal bacteria. It has been reported that bifidobacteria may alter the preferential direction of their metabolic pathways, and subsequently the ratio of organic acids produced during fermentation, based upon the carbohydrates available for their use (29, 38, 42). Some of the end products of carbohydrate metabolism in bifidobacteria (lactic, acetic, and formic acids) can exert beneficial effects on human health (37).
A relationship seems to exist between the assimilation of oligosaccharides and the level of bile salt resistance in bifidobacteria. In general, the presence of a metabolizable carbon source could alleviate the toxic effect of bile salts (11, 30). It has been demonstrated that resistance to bile was increased in medium containing fructo-oligosaccharides compared to medium containing their monomeric components (30). Since the cellular detoxification of bile salts is an energy-dependent mechanism (30), the predicted higher yields of energy on oligosaccharides than that on monosaccharides might contribute towards increased bile salt resistance (11, 29, 35, 38). Therefore, it could be hypothesized that a bile-adapted microorganism should have optimized the cellular ways to obtain energy from available carbon sources. In a related study, we recently indicated that fructose 6-phosphate phosphoketolase and glycosidic activity levels could be modified in some cases as a consequence of the acquisition of bile salt resistance (26, 32). At the same time, preliminary evidence obtained by us indicated that the acquisition of bile salt resistance in bifidobacteria can modify growth in medium containing glucose or maltose as the carbon source (10).
Several studies of amylolytic Bifidobacterium strains have been conducted in past years (16, 21, 22). Starch is one of the main components of some tubers, legumes, and cereal grains (3). In spite of the importance of these vegetal foods in the human diet throughout the world, fermentation patterns of gluco-oligosaccharides have remained considerably less studied than those of fructo- and galacto-oligosaccharides (13, 15, 17, 30, 33, 38, 42).
Maltose ([1,4]-
-D linkages) is a glucose disaccharide that can result from the partial hydrolysis of starch by intestinal bacteria. In the present work, we analyze differences in growth and fermentation patterns of the strain B. animalis subsp. lactis IPLA 4549 and its bile-resistant derivative B. animalis subsp. lactis 4549dOx (14, 26) in medium containing glucose or maltose as the carbon source.
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A basal fermentation medium (FM) (tryptone, 10 g/liter; bacteriological meat extract, 8 g/liter; yeast extract, 4 g/liter; dipotassium phosphate, 2 g/liter; diammonium citrate, 2 g/liter; sodium acetate, 5 g/liter; magnesium sulfate, 0.2 g/liter; manganese sulfate, 0.04 g/liter; and L-cysteine, 0.5 g/liter), added with 20 g/liter of the corresponding sugar, was used for fermentation experiments with glucose and maltose as the carbon source.
Identification and identity of mother and bile-resistant derivative strains.
Identification to the species level of the mother strain and its bile-resistant derivative as well as the identity between both strains was corroborated by partially sequencing the 16S rRNA gene. Isolated colonies of microorganisms were washed and resuspended in 500 µl deionized water. Cell suspensions were heated for 10 min at 98°C and then centrifuged (16,000 x g, 10 min). PCR mixtures were composed of 5 µl of the supernatant, a 0.25 µM concentration of each primer, a 200 µM concentration of each deoxynucleoside triphosphate (Amersham Biosciences, Uppsala, Sweden), and 2.5 U of Taq DNA polymerase (Roche Diagnostics, S.L., Barcelona, Spain) in a final volume of 50 µl. Amplification of the DNA was performed using the following two pairs of primers: Y1 and Y2 (43), which flanked a portion of approximately 350 bp, including the variable regions V1 and V2 of the 16S rRNA coding gene (25), and Bif164 and Bif662, which allowed the amplification of a fragment of
523 bp between variable regions V2 and V4 of the 16S rRNA gene (20). The thermal cycle program used consisted of the following time and temperature profile: an initial cycle of 95°C for 5 min, 30 cycles of 94°C for 45 s, 56°C for 1 min, and 72°C for 45 s, and a final extension step of 10 min at 72°C. DNA amplification was performed in a PCR Sprint thermal cycler (Hybaid Ltd., Ashford, Middlesex, United Kingdom). Amplified products were subjected to gel electrophoresis in 1% agarose gels and were visualized by ethidium bromide staining.
PCR products were purified using a GenElute PCR clean-up kit (Sigma) to remove unincorporated primers and nucleotides. Automated sequencing of one strand of the PCR products was done at the Servicio de Secuenciación (University of Oviedo, Spain) with primer Y1 or Bif164 in a 373A automated gene sequencer (Applied Biosystems, Foster City, Calif.). The Basic Local Alignment Search Tool (BLAST) (1) program was used to compare the sequences obtained with those of reference strains held in GenBank.
The identification of B. animalis strains to the subspecies level was achieved as described by Ventura and Zink (40, 41). DNAs were obtained as indicated above. A fragment of approximately 770 bp corresponding to the 16S-23S internal transcribed spacer rRNA gene region was amplified with primers 16S-for and 23Si. The PCR products were digested with the restriction enzyme Sau3AI and visualized by agarose gel electrophoresis and ethidium bromide staining.
Growth in medium containing glucose or maltose as a carbon source.
Overnight cultures in MRSC were washed twice with the same volume of FM at room temperature. Afterwards, 150-µl aliquots of washed cultures were resuspended in tubes containing 15 ml of FM with glucose or maltose. Batch cultures were incubated at 37°C in an anaerobic chamber, and the optical density at 600 nm (OD600) and the pH were measured throughout incubation. Two independent fermentations for each sugar were carried out simultaneously.
Preparation and incubation of resting cells.
Bifidobacterium cells were collected by centrifugation (10,000 x g, 15 min) from cultures in FM plus glucose or maltose at three defined sampling points through growth (exponential phase, beginning of stationary phase, and late stationary phase) (Table 1). The pellet of each tube was washed twice with 33 mM potassium phosphate buffer, pH 6.5, and then resuspended in 10 ml of 33 mM potassium phosphate buffer, pH 5.6, containing 25 mM glucose. The resting cell suspension was incubated with constant mild stirring at 37°C for 4 h in an anaerobic jar with the Anaerocult A system (Merck, Darmstadt, Germany).
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TABLE 1. Metabolic activity and related parameters of buffered resting cells of the mother strain B. animalis subsp. lactis IPLA4549 and its bile-resistant derivative B. animalis subsp. lactis 4549dOx collected at several sampling points throughout fermentation in FM supplemented with glucose or maltose as the carbon source
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For mother and derivative strains grown in glucose and maltose, we calculated for the previously defined sampling points the acetic acid-to-lactic acid (A/L) and formic acid-to-lactic acid (F/L) molar ratios as well as the carbon balance of formic acid formation, using the following formula:
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Considering that for the fructose 6-phosphate shunt (Fig. 1) the production of 1 mol of acetic acid gives rise to the formation of 1 mol of ATP, 1 mol of lactic or formic acid generates 2 mol of ATP, and the phosphorylation of glucose at the beginning of glucolysis consumes 1 mol of ATP (2), we estimated the theoretical energetic ATP yield (theoretical mol of ATP formed per mol of glucose consumed) for the same sampling points indicated above, using the following formula:
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FIG. 1. Short schematic representation of the main steps of the fructose 6-phosphate shunt in Bifidobacterium (2, 6). Shaded boxes indicate molecules of ADP, ATP, NAD+, and NADH formed.
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Resting cell supernatants (1.5 ml), obtained as previously described, were mixed with 10 µl of an internal standard (IS) aqueous solution containing 0.156 mg/ml of propyl acetate (Chem Service Inc., West Chester, PA). Samples were placed in a 25-ml needle sparger tube and purged with helium at a flow rate of 45 ml/min for 20 min at 50°C. The volatile compounds were trapped by adsorption to the trap, which was maintained at 35°C with 4.5 lb/in2 back pressure. Water was removed by flushing the trap with helium for 2 min (dry purge). The volatile compounds were desorbed from the trap (by heating at 250°C for 2 min) directly into the injection port at 220°C, with a split ratio of 1:50 and a pressure at the column head of 30 lb/in2. Separation was carried out in an HP-Innowax capillary column (60-m length by 0.25-mm internal diameter, with a 0.25-µm film thickness; Agilent). Chromatographic conditions were as follows: initial oven temperature of 40°C, 1°C/min up to 45°C, 2 min at 45°C, 5°C/min up to 55°C, 20°C/min up to 210°C, and 2 min at 210°C. The column was directly connected to an MS detector, and the electron impact energy was set to 70 eV. The data collected were in the range of 25 to 250 atomic mass units (at 3.25 scans/s). Ethanol was identified by comparison of its mass spectrum with that in the HP-Wiley 138 library (Agilent) and by comparison of its retention time with that of an ethanol standard (Fluka/Sigma-Aldrich Química S.A.). The peak for ethanol was quantified as the relative abundance with respect to the IS (area of total ionic counts of the sample/area of total ionic counts of the IS). The concentration (mM) of ethanol was calculated using the linear regression equation (R2
0.99) from a standard curve obtained with at least three replicate measures. Results at each sampling point were expressed as concentrations of ethanol per cell OD600 (mM/OD600 unit).
For mother and derivative strains grown in glucose and maltose, we calculated for the previously defined sampling points the carbon balance of ethanol formation, using the following formula:
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Statistical analysis.
Data for the amounts of organic acids and ethanol formed as well as the amount of sugar consumed by resting cells were subjected to independent one-way analysis of variance using SPSS 11.0 software for Windows (SPSS Inc., Chicago, IL). Tests were performed within each sugar category, using the factor "type of strain" with two categories, "mother" and "derivative."
Nucleotide sequence accession numbers.
The partial nucleotide sequences of the 16S rRNA V1-V2 genes flanked by primers Y1 and Y2 of B. animalis IPLA 4549 and B. animalis 4549dOx have been deposited in the GenBank database under accession numbers AY835936 and AY835937, respectively. The nucleotide sequences of the V2-V4 region flanked by primers Bif164 and Bif662 of B. animalis IPLA 4549 and B. animalis 4549dOx were given the accession numbers AY835938 and AY835939, respectively, in the GenBank database.
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Growth in medium containing glucose or maltose as the carbon source.
Figure 2 shows the growth and pH changes of cultures containing glucose and maltose. No differences in pH values were found at late stationary phase between the mother strain and the derivative growing in medium with either sugar. However, differences in growth were evident for each microorganism between glucose- and maltose-containing medium as well as between the mother strain and its derivative on each carbohydrate. On glucose, IPLA 4549 displayed higher cell densities throughout growth than 4549dOx, showing that the latter microorganism had a longer lag phase and slower growth in exponential phase than the mother strain. When maltose was used as the carbon source, the growth of both strains in exponential phase was similar, although the derivative reached slightly higher optical densities in stationary phase than those reached by the mother strain. It is notable that considerably higher cell densities were obtained for the bile-resistant derivative on medium with maltose than on medium with glucose, whereas differences between both sugars were less pronounced for the mother strain. Our results indicated that the acquisition of bile resistance caused a shift in the growth pattern of the 4549dOx strain on glucose and maltose. The changes mainly resulted in the adaptation of the bile-resistant strain to a preferential use of maltose, to the detriment of its ability to grow in glucose.
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FIG. 2. Microbial growth of the original strain B. animalis IPLA 4549 (black symbols) and its bile-resistant derivative B. animalis 4549dOx (white symbols) in FM supplemented with glucose (a) or maltose (b). Squares, OD600; circles, pH values.
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Several authors have previously found differences in Bifidobacterium growth depending on the species and the carbohydrate used (15, 27, 29, 42). In general, short oligosaccharides are better substrates for the growth of bifidobacteria than are monosaccharides or polysaccharides (15, 31, 38, 39). The fact that our bile-resistant derivative showed abrupt changes in the growth pattern on glucose but not on maltose could suggest the presence of different transport systems into the cell for each carbohydrate and probably a deep modification of the glucose uptake system. Although specific transport systems for oligosaccharides have been suggested for lactobacilli and bifidobacteria (13, 17, 29), very little is known about carbohydrate transport in Bifidobacterium. The uptake of glucose in Bifidobacterium breve is dependent on sugar phosphorylation (9), and two proton symport systems have been suggested to exist in B. bifidum for the uptake of glucose and lactose (18, 19). Another possibility to explain the changes in growth pattern between the mother and derivative strains is the presence of different expression levels of enzymatic activities involved in the catabolism of these carbohydrates (26, 32).
Changes occurring in the pattern of carbohydrate utilization by the bile-resistant derivative could also affect the end products obtained from the D-fructose 6-phosphate shunt. Therefore, studies on glucose consumption and end-product formation (acetic, lactic, and formic acids and ethanol) were achieved with buffered suspensions of cells (resting cells) from the mother and derivative strains taken throughout growth in medium containing each of the two carbohydrates studied.
Glucose consumption by resting cells.
Microbial samples were taken from FM plus glucose or maltose at defined sampling points throughout the incubation (Table 1). At exponential phase, cells of the mother strain were withdrawn after 8 h of incubation, and cells of the derivative were taken after 24 and 10 h of incubation for cultures in glucose and maltose, respectively. Cells at the beginning of stationary phase were taken at 24 and 36 h for the original and derivative strains, respectively, in medium with glucose and at 24 h for both strains grown in maltose. Microbial samples at late stationary phase were taken after 48 h of incubation.
A comparison of the amounts of glucose consumed by resting cells, as corrected according to the OD600 of cultures, was favorable to the mother strain throughout growth in maltose and at the exponential and late stationary phases when grown in glucose (Table 1). In a previous work, we found higher glucose consumption by resting cells of the derivative than by cells of the mother strain during the late stationary phase of cultures in glucose (32). The differences between both works could be attributed to the different culture medium used in each case. In fact, the MRS broth (Biokar) that was formerly used (32) promoted similar growth patterns (slightly slower for the derivative) in exponential phase for both the mother and derivative strains, whereas the FM-plus-glucose medium used for the present work readily retarded the growth of the bile-resistant derivative. Therefore, the composition of the medium seems to exert a strong influence on the ability of the derivative to use glucose as a carbon source, which in its turn results in sharp modifications of the growth pattern.
Metabolite production by resting cells throughout fermentation.
The production of organic acids from glucose by the original and derivative strains was determined in buffered resting cells previously grown on medium containing glucose or maltose at the same sampling points previously chosen for the determination of glucose consumption (Table 1; Fig. 3). As expected from the results of glucose consumption, the amount of organic acids produced (acetic plus lactic plus formic acids /OD600) was higher in the mother strain than in the bile-resistant derivative, with the exception of cultures at stationary phase in the presence of glucose. As well established for bifidobacteria (4), acetic acid was the major metabolite produced, followed successively by lactic and formic acids. With respect to resistance to bile salts and according to the results for total acids produced, resting cells of the mother strain produced more acetic and lactic acids than those of the derivative throughout growth in maltose and only at exponential phase when grown in glucose. However, in stationary phase the amount of acetic acid formed by the derivative grown in glucose surpassed that produced by the original strain (P < 0.05; statistical analysis not shown). In contrast, formic acid was formed in significantly larger amounts by the derivative than by the mother strain throughout growth in the presence of both sugars (P < 0.01; statistical analysis not shown). Moreover, formic acid was not detected at the beginning of fermentation in the mother strain but appeared at the same point in the derivative. With respect to ethanol, as expected it was detected at considerably lower levels than acetic and lactic acids (Fig. 3). In agreement with the results obtained with formic acid, ethanol was produced at higher levels by the derivative than by the mother strain throughout growth in glucose and maltose (P < 0.01 in most cases; statistical analysis not shown). The data presented here indicate that the preferential direction of the pathways followed for the production of organic acids and ethanol by our B. animalis strains is dependent not only on the growth substrate, as indicated previously by other authors (23, 29, 38), but also on the adaptation of cells to high bile salt concentrations.
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FIG. 3. HPLC analysis of acetic, lactic, and formic acids and GC-MS analysis of ethanol produced by resting cells of the original strain B. animalis IPLA 4549 (black symbols) and its bile-resistant derivative B. animalis 4549dOx (white symbols) collected at several points throughout fermentation in FM supplemented with glucose (a) or maltose (b). Results were corrected to the optical densities at 600 nm. The sampling points throughout growth in each medium are indicated in Table 1.
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From a physiological and ecological point of view, it can be supposed that when undigested carbohydrates reach the colon at the end of the digestive process (under nonlimiting nutrient conditions), the bile-resistant derivative may use glucose disaccharides, which are abundant in this situation, with preference. However, the microorganism retains the ability to slowly use glucose under nutrient-starving conditions, when only small amounts of carbohydrates are available from the diet, obtaining in this situation a better energetic balance from glucose than the mother strain. Finally, the modification of the redox balance of cells could improve the survival of the bile-resistant microorganism in the reducing environment of the colon.
This study will support biochemical and molecular analyses that could help us to understand the interrelationships between bile salt adaptation and modifications of fluxes and fates of intermediate compounds through the fructose 6-phosphate shunt in bifidobacteria.
We thank Isabel Cuevas for excellent technical assistance.
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