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Applied and Environmental Microbiology, December 2005, p. 7759-7767, Vol. 71, No. 12
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.12.7759-7767.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität, D-48149 Münster, Germany,1 Chair of Valorisation of Plant Production Chains, Wageningen University, Bornsesteeg 59, 6708 PD Wageningen, The Netherlands2
Received 28 June 2005/ Accepted 28 July 2005
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-amino group to the ß-carboxyl group of each aspartate residue (36, 37, 38). CGP occurs as insoluble inclusions in the cytoplasm and serves as a storage compound for carbon, nitrogen, and energy (20, 22). CGP is insoluble in water at physiological pH and soluble under acidic or alkaline conditions (17). CGP is synthesized naturally in cyanobacteria (6) and also in some other nonphotosynthetic bacteria (15). The key enzyme of CGP synthesis is cyanophycin synthetase (CphA), which catalyzes the ATP-dependent polymerization of aspartate and arginine. Genes encoding cyanophycin synthetases (cphA) have been identified in many cyanobacteria (1, 5, 12, 27, 44). In addition, cphA homologues have also been detected in the genomes of many noncyanobacteria, such as Acinetobacter sp. strain ADP1 (15, 45). CGP is not affected by proteases (31, 37, 38); however, it is hydrolyzed to Asp-Arg dimers by cyanophycinases (20, 25, 26, 29, 31). Purified CGP can be chemically converted to a derivative with a reduced arginine content (14) or to completely biodegradable poly(aspartic acid) (4). Poly(aspartic acid) is used as a substitute for nonbiodegradable polyacrylates, for which many technical applications are described (35), such as water treatment (water softeners) and others (4, 32). Biomedical applications of poly(aspartic acid) have also been described (19, 30, 43). In addition, it can be also considered a source of arginine and aspartic acid, and therefore there is strong interest in producing CGP. Since for various reasons cyanobacteria are not suitable for the production of CGP (13), cyanobacterial cphA genes were heterologously expressed in various heterotrophic bacteria (3, 5, 12, 27, 44) or in plants (24). A recombinant strain of Escherichia coli harboring cphA of Synechocystis sp. strain PCC6803 accumulated CGP as up to 24% (wt/wt) of the cell dry matter (CDM); however, such high CGP contents were obtained only during cultivation in costly complex media (11). In addition, the cultivation conditions for noncyanobacteria possessing cphA homologues were optimized with regard to high CGP contents. This was successfully done with Acinetobacter sp. strain ADP1, which accumulated CGP to the highest ever reported content, 46% (wt/wt) of the cell dry mass in mineral salt medium, but only when arginine was used as the carbon source (9).
There are multiple pieces of evidence showing that provisions of CphA with their substrates aspartate, and in particular, arginine represent bottlenecks of CGP synthesis in cells (9, 39, 41). Therefore, CGP accumulation in cells cultivated in mineral salt medium is low, and complex nutrients or arginine must be added to the medium as a supplement to obtain cells with higher CGP contents. This makes the biotechnological production of CGP economically unfeasible unless a cheap source of these amino acids is found. Protamylasse, or potato juice concentrate, is an abundant residual fraction remaining during the industrial production of starch from potatoes. In The Netherlands alone, about 70,000 tons of dry weight of protamylasse is produced annually. Protamylasse contains soluble peptides, amino acids, with asparagine as the main component, organic acids, carbohydrates, salts, and minerals (Table 1) and may be a suitable substrate for biotechnological production processes. With regard to the commercial production of CGP, the high arginine, aspartate, and asparagine contents of protamylasse are of particular interest. The application of protamylasse as a sole and complete medium could make the biotechnological production of CGP economically feasible, because the costs of protamylasse are much lower than those of other complex media or mineral salt media, and also environmentally friendly, because it provides a useful application of this residual of the starch industry. Protamylasse has been applied as raw material for fermentation to obtain single cell proteins, ethanol, or beta-glucan (21). Protamylasse was also fractionated into potassium salt and basic or acidic amino acids (40). Since protamylasse is, to our knowledge, not used in biotechnological processes on an industrial scale, we investigated its suitability for CGP production.
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TABLE 1. Chemical composition of protamylassea
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TABLE 2. Strains used for this study
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Cultivation at the 30-liter scale.
A Biostat DL30 stainless steel reactor (B. Braun Biotech International, Melsungen, Germany) with a total volume of 42 liters (28-cm inner diameter and 71-cm height) and a d/D value ratio (ratio of stirrer diameter to vessel diameter) of 0.375, as described previously (11), was used. The dissolved oxygen, temperature, pH, foam, and optical density were measured with probes and sensors. The bioreactor was filled with 24 liters of 6% (vol/vol) protamylasse, and the pH value was set to 7.5 before in situ sterilization. After sterilization, the cultivation parameters such as temperature, stirrer speed, and airflow were adjusted, and 100 µg/ml ampicillin was added to the medium before inoculation. Carbon dioxide and oxygen concentrations in the spent gas leaving the bioreactor were measured with a URAS 10 P NDIR spectrophotometer and a Magnos 6 G oxygen analyzer (both from Mannesmann, Hartmann and Braun, Frankfurt, Germany), respectively. Fermentation was carried out at 30°C if the culture was used as a preculture to inoculate the 650-liter bioreactor (see below) or at 37°C if the culture was the main culture, with pO2 ranges in the medium of 0 to 100% and 20 to 40% saturation for batch and fed-batch cultivations, respectively. Agitation and aeration rates were varied between 150 and 350 rpm or 0.8 and 1.0 volume per volume and min (vvm), respectively, as indicated in the text. The pH in the medium was either not adjusted or held between 7.0 and 7.5 or between 6.8 and 7.0 by the addition of 4 M HCl or NaOH. Foam was controlled by a mechanical foam destroyer and by the addition of the antifoam agent Silikon Antischaum emulsion SLE (Wacker, Darwin Vertriebs GmbH, Ottobrunn, Germany), if necessary.
Cultivation at the 500-liter scale.
Cultivation at the 500-liter scale was performed in a Biostat D650 stainless steel bioreactor (B. Braun Biotech International), which had a total volume of 650 liters (64-cm inner diameter and 198-cm height) and the same d/D value as the Biostat DL30 reactor described above. All other equipment was the same as that described above for the Biostat DL30 bioreactor. Fermentations were done as described above.
Cell harvest from 30- and 500-liter cultivations.
Cells from 30- and 500-liter cultivations were harvested by centrifugation at 4°C in a CEPA type Z41 or type Z61 continuous centrifuge (Carl Padberg Zentrifugenbau GmbH, Lahr, Germany), respectively.
Analysis of ammonium.
Ammonium was determined in cell-free supernatants by using a gas-sensitive ammonium electrode (type 152303000; Mettler Toledo GmbH).
Analysis of inorganic phosphate concentration in protamylasse.
The concentrations of inorganic phosphate in cell-free supernatants were determined colorimetrically as described previously (8).
Determination of cell dry matter.
To determine the bacterial CDM, defined volumes of cultures were centrifuged in a bench centrifuge at 3,500 x g and 4°C. The supernatant was discarded, and cells were washed by centrifugation after being suspended in saline (0.9% [wt/vol] NaCl). The cells were lyophilized, and their masses were gravimetrically determined.
Purification and analysis of CGP.
CGP was isolated from cells of E. coli DH1, P. putida KT2440, and A. calcoaceticus strain ADP1 by the procedure described by Simon and Weathers (37). A recently described fast method (9) was also used for routine CGP determination. For this method, the cells were first disintegrated by sonification for 2 min per ml of cells suspended in 50 mM Tris-HCl (pH 7.5), using a Sonoplus sonifier (Bandelin Electronic, Berlin, Germany), before CGP was extracted by the fast method.
Electrophoresis and determination of protein concentration and amino acid composition.
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis was performed in 11.5% (wt/vol) gels according to a standard method (16). Proteins and cyanophycin were stained with Serva Blue R (42). Concentrations of CGP were determined as described by Bradford (7). The amino acid composition of the diluted protamylasse or CGP was determined by high-performance liquid chromatography (HPLC) analysis as described previously (11).
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TABLE 3. CGP biosynthesis in bacteria using protamylasse as a complex medium for growth
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FIG. 1. Effect of protamylasse concentration on growth and CGP accumulation in E. coli DH1(pMa/c5-914::cphA6803). Experiments were done in 250-ml Erlenmeyer flasks, each containing 100 ml medium with the indicated concentration of protamylasse and 100 µg ampicillin per ml. The flasks were inoculated from a preculture previously grown at 30°C. CGP biosynthesis was induced by incubating the cultures at 37°C. After an incubation period of 44 h, cells were harvested and analyzed for CGP content ( ) and cell density ( ) as described in Materials and Methods. The data shown represent mean values and standard deviations of three independent cultivation experiments.
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TABLE 4. Effect of different initial pH values on CGP content in E. coli DH1(pMa/c5-914::cphA6803)
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TABLE 5. Effect of incubation period on CGP synthesis in E. coli DH1(pMa/c5-914::cphA6803)a
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Fed-batch cultivation is one of the most often-used strategies to achieve high cell densities and may also be useful for the production of CGP. The cultivation of E. coli DH1(pMa/c5-914::cphA6803) was therefore done one more time in 24 liters of 6% (vol/vol) protamylasse, with an initial pH of 7.0. This time the pH was maintained between 6.8 and 7.0. During growth, additional protamylasse was fed as shown in Fig. 2. Airflow and stirring were changed during cultivation to keep the dissolved oxygen concentration between 20 and 40% (pO2, % of saturation) and to avoid a restricted oxygen supply. The temperature was shifted from 30 to 37°C after 6 h of cultivation to induce the expression of cyanophycin synthetase. Cells grew exponentially at a growth rate (µ) of 0.17 h1 during the batch period at 30°C. During the fed-batch period at 37°C, the cell density continued to increase, and after 19 h of cultivation a final density of 10 ± 0.3 g/liter was obtained, which was about twofold higher than that in the previous batch cultivation experiment. However, the CGP content of the cells was only 11.9% ± 0.21% (wt/wt), and due to the lower CGP concentration in the cells, the final CGP concentration in the bioreactor could not be increased in this experiment.
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FIG. 2. Fed-batch fermentation of E. coli DH1(pMa/c5-914::cphA6803) in Biostat DL30 stirred tank reactor containing 22 liters of 6% (vol/vol) protamylasse medium. The medium was inoculated with four 400-ml precultures grown in the same medium, but at a temperature of 30°C only. The fermentation parameters and cultivation conditions in the Biostat DL30 reactor were a pH of 6.8 to 7.0, aeration at 0.8 to 1.0 vvm, and agitation at 150 to 350 rpm. Aeration and agitation were adjusted according to the oxygen demand of the culture. The temperature was raised from 30 to 37°C after a cultivation period of 6 h (dashed arrow) to induce the expression of CGP synthetase. Portions of 250 to 500 ml 25% (vol/vol) protamylasse were repeatedly added during fermentation at the indicated times (solid arrows). (A) Cell density (), CGP content of cells ( ), pO2 (-), and ammonium concentration (+). (B) Optical density at 850 nm (OD850, ), airflow (), O2 in exhaust gas ( ), and CO2 in exhaust gas ( ) were determined as described in Materials and Methods.
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FIG. 3. Batch fermentation of E. coli DH1(pMa/c5-914::cphA6803) in Biostat D650 stirred tank reactor containing 400 liters 6% (vol/vol) protamylasse medium. The preculture was prepared at the 30-liter fermentation scale using the same medium but an incubation temperature of 30°C only. The fermentation parameters and cultivation conditions in the Biostat D650 reactor were a pH of 7.5, aeration at 0.15 vvm, agitation at 150 to 200 rpm, and a temperature of 37°C to induce the expression of CGP synthetase. (A) Ammonium ( - ), optical density at 600 nm (OD600, ), O2 in exhaust gas ( ), and CO2 in exhaust gas ( - ). (B) Cell density (), CGP content of the cells ( ), and pO2 ( ) were determined as described in Materials and Methods.
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Pattern of amino acid utilization.
Samples from the 500-liter batch cultivation were centrifuged for 10 min at 14,000 x g to remove cells and other insoluble material and then were analyzed by HPLC without hydrolysis. The concentration of each amino acid was quantified at the beginning and at the end of the fermentation (Fig. 4). Of the aspartic acid and asparagine, which comprised about 35% of the amino acids present at the beginning of cultivation (Fig. 4), about 93% was utilized during the growth of E. coli DH1(pMa/c5-914::cphA6803). Similarly, glutamic acid and glutamine, amounting to 11.3% of the total amino acids present at the beginning, were reduced to 0.9% during cultivation. Glycine, histidine, lysine, methionine, ornithine, serine, threonine, and valine were also almost completely utilized during cultivation. In contrast, only 30% of the initial alanine was consumed. Therefore, alanine became the most abundant amino acid in the medium at the end of the cultivation period, constituting about 60% of the remaining amino acids. Beside alanine, only the concentrations of arginine, tryptophan, and tyrosine remained almost constant in the medium during fermentation, whereas that of ammonium increased during cultivation (Fig. 4).
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FIG. 4. Pattern of amino acid utilization during cultivation of E. coli DH1(pMa/c5-914::cphA6803) on 6% (vol/vol) protamylasse. Samples were obtained from the 500-liter batch cultivation experiment with the recombinant strain of E. coli and centrifuged, and the supernatant was then analyzed by HPLC as described in Materials and Methods. The white line shows the chromatogram obtained from an analysis of the sample withdrawn at the beginning of the fermentation (0 h), whereas the black line represents the chromatogram of the sample withdrawn at the end of the cultivation (14 h). Each peak represents a specific amino acid or another metabolite in relation to the retention time, as indicated in the figure. The values shown on the y axis (mV) indicate the concentrations of the respective compounds. Abbreviations: A, alanine; Am, ammonium; D, aspartic acid; E, glutamic acid; G, glycine; H, histidine; K, lysine; M, methionine; N, asparagine; O, ornithine; Q, glutamine; R, arginine; S, serine; T, threonine; V, valine; W, tryptophan; Y, tyrosine.
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All three bacterial strains investigated in this study grew to appropriate cell densities on protamylasse. However, Acinetobacter sp. strain ADP1 and P. putida KT2440 cells accumulated only a little CGP when grown on protamylasse under the applied conditions, which corresponded to only 2.5% of the CGP contents of E. coli DH1(pMa/c5-914::cphA6803) cells. One reason for the low CGP contents of these cells may be the high phosphate content of protamylasse (25.4 g/liter) because Acinetobacter sp. strain ADP1 only synthesizes CGP under phosphate limitation conditions. However, even if the phosphate concentration in protamylasse was reduced by precipitation in the presence of CaCl2, no significant increase in the CGP content of the cells occurred. Another explanation for the low CGP contents of the cells may be the presence of other amino acids beside arginine that could negatively interfere with CGP biosynthesis (9). Moreover, the synthesis of CGP in both bacterial strains depends on arginine feeding as the sole carbon source or on supplementation of arginine and aspartic acid, respectively (9, 41). Protamylasse contains more aspartic acid and asparagine than arginine (Table 1), which is not optimal for CGP synthesis in Acinetobacter sp. strain ADP1.
In contrast, E. coli DH1(pMa/c5-914::cphA6803) cells showed marked CGP synthesis when grown in protamylasse and when cyanophycin synthetase was induced by a shift of the cultivation temperature from 30 to 37°C (11). Cultivation experiments with different concentrations of protamylasse revealed that high CGP synthesis and a high cell density were achieved using 6% (vol/vol) protamylasse. A further increase in the protamylasse concentration reduced the cell density and CGP content by 33% and 95%, respectively. Whether some nutrients reach a toxic concentration when high concentrations of protamylasse are used has to be analyzed. Furthermore, the presence of other amino acids or organic acids could partially inhibit or reduce CGP biosynthesis. Short-chain-length peptides present in the protamylasse could act as primers for CGP biosynthesis, since the provision of amino acids or small peptides was reported in other studies to increase CGP biosynthesis (2, 3, 11).
One goal of this study was to achieve CGP production on a large scale by obtaining cells with high CGP contents. The cultivation experiments with E. coli DH1(pMa/c5-914::cphA6803) at 30- and 500-liter scales demonstrated that CGP can be produced in large amounts by using protamylasse as complete medium. Protamylasse may be pretreated to reduce the amount of organic acids, which are known to reduce the amounts of recombinant proteins formed (18) or to increase the concentration of arginine, the key amino acid in CGP synthesis in many bacterial strains (9, 41). Furthermore, application of the acid extraction method (11) for the isolation of CGP is an effective and time-saving process compared to the costly and labor-intensive method described previously by Simon and Weathers (37) and was also applicable to the cells obtained in this study. The CGP isolated by the acid extraction method resembled very much the CGP previously isolated from cells of E. coli cultivated in other media with regard to its molecular weight and polydispersity, and it exhibited a high degree of purity when analyzed by HPLC (data not shown).
Qualitative and quantitative analyses of the amino acid patterns of the protamylasse medium before and after cultivation of the recombinant E. coli strain revealed that the cells utilized most of the amino acids present in the medium to a large extent. This included the major fractions of aspartic acid, glutamic acid, asparagine, and glutamine. The consumption of 92% of the glutamic acid and glutamine during the cultivation of E. coli DH1(pMa/c5-914::cphA6803) in a medium containing a relatively high salt concentration (Table 1) may be coupled with the accumulation of potassium glutamate (10, 23), whereas it is known that the intracellular pools of alanine, arginine, and lysine remain approximately constant in cells of E. coli K-12 (34). There were only a few amino acids, such as alanine, arginine, tryptophan, and threonine, that were scarcely utilized. Interestingly, high CGP contents were obtained even though only a little arginine was present in the protamylasse medium and although the concentration of arginine in the medium did not change very much during cultivation. In all previous studies, arginine had to be fed to cultures to obtain high CGP contents in cells of recombinant strains of E. coli and other organisms. Whereas aspartic acid could be directly incorporated into CGP, E. coli obviously synthesized arginine from the other amino acids during cultivation in protamylasse medium.
The aim of this study was to investigate whether protamylasse provides a suitable medium for the biotechnological production of CGP on a large scale. The various cultivation experiments done here clearly revealed that protamylasse is suitable for CGP production. Assuming that E. coli can be cultivated to densities of 100 g/liter or higher, that CGP contents of the cells of 25% of CDM are obtained in industrial-scale fermentation within about 30 h, and that CGP can be released without mechanical cell disruption, the production costs for CGP might become very low. Beside further optimization of the process towards higher cell densities, the foreign cphA gene must be stabilized in the E. coli host.
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