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Applied and Environmental Microbiology, December 2005, p. 8241-8248, Vol. 71, No. 12
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.12.8241-8248.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260
Received 22 June 2005/ Accepted 27 August 2005
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Flavone biosynthesis starts with the conversion of cinnamic acid to p-coumaric acid by a P450 monooxygenase, cinnamate 4-hydroxylase (C4H). p-Coumaric acid is then converted to 4-coumaroyl coenzyme A (4-coumaroyl-CoA) by 4-coumaroyl:CoA ligase (4CL). Next, chalcone synthase (CHS) catalyzes condensation of 4-coumaroyl-CoA with three molecules of malonyl-CoA, in which tetrahydroxychalcone is formed. Following this reaction, chalcone isomerase (CHI) performs stereospecific isomerization of tetrahydroxychalcone to (2S)-flavanone, which is the branch point precursor of many important downstream flavonoids, including flavones. In most cases, a membrane-bound cytochrome P450 monooxygenase, flavone synthase II (FSII), catalyzes the biosynthesis of flavones from (2S)-flavanones (1, 20). However, in certain species of Apiceae, this reaction is performed by soluble flavone synthase I (FSI) (Fig. 1) (19, 22).
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FIG. 1. Flavone biosynthetic pathway. 4CL, 4-coumaroyl:CoA ligase; CHI, chalcone isomerase.
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In an extension of our previous work, we describe here for the first time the development and optimization of flavone-producing recombinant yeast strains. The model microorganisms allowed evaluation of the two alternative ways that plants have evolved for flavone synthesis, namely, through the P450 monooxygenase FSII, which requires NADPH and is inhibited by Fe2+, and the soluble dioxygenase FSI, which requires 2-oxoglutarate, Fe2+, and ascorbate as cofactors (21). The overall flavonoid metabolism is different in the two strains, and the FSI-expressing recombinant strain exhibits better overall production. Overexpression of the yeast P450 reductase CPR1 and use of acetate as a carbon source led to improvement in flavone biosynthesis. Further in vivo experiments demonstrated that apigenin, but not luteolin, is a feedback inhibitor of the flavone biosynthetic circuit.
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Luria broth rich medium was purchased from Sigma-Aldrich. S. cerevisiae YPD rich medium and SC minimal selection medium with glucose or raffinose and galactose were prepared as previously described (9, 39). Minimal medium with acetate (MA) was prepared as described by Verduyn et al. without the antifoaming agent (34).
Strains, plasmids, and plant materials.
All strains and plasmids used are shown in Table 1. Plants were purchased from local nurseries and were exposed to the sun for a few hours before materials were collected. For mRNA extraction, leaflets of flat-leaved Petroselinum crispum (parsley) and flower petals of Antirrhinum majus cv. Montego Yellow (snapdragon) and Catharanthus roseus (Madagascar periwinkle) were used. Plant materials were quickly frozen with liquid nitrogen and stored at 80°C until they were used.
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TABLE 1. Strains and plasmids used in the present study
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Construction of plasmids.
The flavone biosynthetic genes were introduced into yeast using two coreplicable shuttle vectors, YEplac181 and YCplac22, which carry the LEU2 and TRP1 markers, respectively, to allow selection of transformants by growth in minimal medium lacking leucine and tryptophan.
Plasmid Ycc4c181, derived from plasmid YEplac181 and carrying cDNA for C4H from Arabidopsis thaliana, Pc4cL-2 from parsley, and CHI-A and chs from Petunia x hybrida, has been described previously (39).
Plasmid YC-FSI was constructed by amplifying the PcFSI cDNA together with the GAL1 promoter from plasmid pYES-FSI using a forward primer hybridizing to a vector DNA region that lies upstream of the GAL1 promoter and a reverse primer that hybridizes at the end of the cloned cDNA. The GAL1-PcFSI fusion was then inserted into vector YCplac22 between HindIII and KpnI sites, yielding plasmid YC-FSI. Plasmid YC-AFNS2 was constructed by a similar approach by inserting GAL1-AFNS2 into vector YCplac22 between BamHI and KpnI restriction sites. Insertion of GAL1-CPR1 between PstI and SalI restriction sites of vector YCplac22 and insertion of GAL1-AFNS2 between SacI and XbaI restriction sites yielded plasmid YC-AFNS2+CPR1.
In vitro AFNS2 assay.
Yeast recombinant strains harboring pYES-AFNS2, pYES-CPR1, and pYES-CPR were cultivated in liquid SC minimal medium lacking uracil (SC-Ura) with glucose as the carbon source overnight at 30°C. For protein expression, the overnight culture was used to inoculate 250 ml SC-Ura minimal medium with raffinose to obtain an initial absorbance at 600 nm (A600) of 0.2. When the culture reached an A600 of 0.8, sterile galactose was added into the culture to a final concentration of 2% to induce protein expression. After 24 h of incubation at 30°C, recombinant yeast cells were harvested and used for microsomal protein preparation as described by Schoehnbohm et al. (30). A BCA protein assay kit (Pierce Chemicals, Rockford, IL) was used for protein quantification. In vitro apigenin synthesis was performed in 100-µl reaction mixtures containing 0.1 µmol of naringenin substrate, NADPH at a final concentration of 1.5 mM, 20 µg of a microsomal preparation of AFNS2, and 50 µg of a microsomal preparation of the P450 reductase (either C. roseus CPR or yeast CPR1). The reaction was initiated by addition of a freshly prepared NADPH solution, and the mixture was incubated at 25°C for 2 h. The reaction products were extracted with an equal volume of ethyl acetate twice and evaporated to dryness under a vacuum. Acetonitrile-water (1:3, vol/vol) was then added to dissolve the organic compounds for high-performance liquid chromatography (HPLC) analysis.
Heterologous expression and fermentation.
In order to engineer flavone biosynthesis through two different flavone synthases, recombinant INVSc1 carrying plasmid Ycc4c181G was transformed with YC-FSI, YC-AFNS2, or YC-AFNS2+CPR1 separately, yielding recombinant strains INV-4G+FSI, INV-4G+AFNS2, and INV-4G+AFNS2+CPR1. Yeast colonies harboring both plasmids were selected by growth on SC agar plates lacking leucine and tryptophan (SC-LeuTrp). For flavone fermentation purposes, an individual recombinant yeast colony was grown overnight in 10 ml liquid SC-LeuTrp medium containing glucose at 30°C with shaking. The following day, a portion of this culture was used to seed the main culture in SC-LeuTrp medium containing galactose and raffinose or MA-LeuTrp containing galactose and acetate to obtain an A600 of 0.4. Then, 0.5 mM phenylpropanoid acid (cinnamic acid, p-coumaric acid, caffeic acid, or ferulic acid) was added to the main culture, and the mixture was incubated at 30°C with horizontal shaking for a maximum of 92 h. For fermentation of INV-4G+FSI, FeSO4, 2-oxoglutaric acid, and sodium ascorbate were added to a final concentration of 0.5 mM. Plasmid stability was checked by isolation from the recombinant strains using Zymoprep I (Zymo Research, Orange, CA) every 24 h, and the plasmids were subsequently used for restriction mapping and PCR analysis.
Analytical methods.
Flavonoids and phenylpropanoid acids were analyzed by HPLC, using an Agilent 1100 series instrument and a reverse-phase ZORBAX SB-C18 column (4.6 by 150 mm) that was maintained at 25°C. The compounds were separated by elution with an acetonitrile-water gradient at a flow rate of 1.0 ml/min. The HPLC conditions were as follows (profile 1): 20 to 27% acetonitrile (vol/vol) for 45 min and 27 to 95% acetonitrile (vol/vol) for 30 s. The retention times under these conditions for the standard authentic compounds were as follows: caffeic acid, 2.7 min; p-coumaric acid, 4.7 min; eriodictyol, 18.4 min; luteolin, 20.8 min; naringenin, 30.9 min; and apigenin, 33.2 min. Cinnamic acid, pinocembrin, and chrysin were separated by elution with an acetonitrile-water gradient at a flow rate of 1.0 ml/min under the following conditions (profile 2): 10 to 40% acetonitrile (vol/vol) for 10 min, 40 to 60% acetonitrile (vol/vol) for 5 min, and 60 to 10% acetonitrile (vol/vol) for 2 min. The retention times for cinnamic acid, chrysin, and pinocembrin were 12.1 min, 16.0 min, and 16.3 min, respectively. Flavanones were detected and quantified by monitoring the absorbance at 290 nm. Flavones were detected and quantified by monitoring the absorbance at 340 nm. Calibration curves were obtained with solutions containing authentic flavanones and flavones at various concentrations.
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In order to investigate and select the most effective P450 reductase for improving AFN2 activity in yeast, we tested C. roseus P450 reductase CPR and S. cerevisiae P450 reductase CPR1 for optimizing the AFNS2 reaction in vitro. We chose C. roseus CPR because in the past it has been used successfully for optimizing the activity of flavonoid P450 monooxygenases, such as cinnamate 4-hydroxylase and flavonoid 3',5'-hydroxylase (11, 16). For this purpose, microsomal proteins of recombinant yeasts individually expressing AFNS2, CPR1, and CPR were prepared. The activity of AFNS2 was investigated by quantifying the conversion of naringenin to apigenin in the presence of NADPH and either CPR1 or CPR. After 2 h, approximately 40% and 90% increases in the amount of apigenin produced were observed in the presence of CPR and CPR1, respectively (Table 2). Based on these results, we concluded that overexpression of yeast CPR1 enhances the performance of AFNS2 more efficiently, and CPR1 was chosen for further investigation.
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TABLE 2. In vitro assay of AFNS2 from yeast microsomal preparation
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S. cerevisiae strain INVSc1 carrying Ycc4c181 was transformed with YC-FSI, YC-AFNS2, and YC-AFNS2+CPR1, generating recombinant strains INV-4G+FSI, INV-4G+AFNS2, and INV-4G+AFNS2+CPR1, respectively. We investigated the abilities of these three recombinant strains to produce flavones when phenylpropanoid acid precursors were added to the SC-LeuTrp culture medium. Expression of the recombinant proteins was induced with galactose, and glucose was replaced with raffinose as the carbon source because raffinose, unlike glucose, does not repress the GAL1 promoter (9). After 46 h, the fermentation products were extracted from the culture media and analyzed using HPLC. The identities of the flavonoid products were determined by cochromatography by matching the UV absorbance spectra (Fig. 2D) and retention times with those authentic standard compounds (Fig. 2A and E). In general, flavonoid accumulation occurred mostly in culture media, and intracellular flavonoid accumulation accounted for less than 10% of the overall flavonoid production. All recombinant strains produced the flavone apigenin (Fig. 2B) when nonhydroxylated cinnamic acid was utilized as the precursor phenylpropanoid acid. Additionally, all recombinant strains were able to metabolize caffeic acid to the corresponding flavone, luteolin, and the corresponding flavanone, eriodictyol (Fig. 2C). Chrysin, however, was detected only in INV-4G+FSI cultures (Fig. 2F). This result confirmed our later finding that snapdragon does not accumulate chrysin. However, it does not exclude the possibility that other FSII enzymes can accept pinocembrin (the flavanone precursor of chrysin) as a substrate. The flavanones pinocembrin (nonhydroxylated) and naringenin (monohydroxylated) were produced by all strains. Incorporation of CPR1 into the flavone biosynthetic pathway with AFNS2 (strain INV-4G+AFNS2+CPR1) resulted in increases in apigenin and luteolin production of 62% and 11%, respectively, compared to the production observed with INV-4G-AFNS2 (Table 3). Addition of ferulic acid did not result in flavanone or flavone production (results not shown).
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FIG. 2. HPLC analysis of recombinant strain INV-4G+FSI and INV-4G+FS2+CPR1 fermentation. (A) Standard compounds separated by using HPLC profile 1. 1, cinnamic acid; 2, p-coumaric acid; 3, caffeic acid; 4, pinocembrin; 5, naringenin; 6, eriodictyol; 7, chrysin; 8, apigenin; 9, luteolin. (B) Apigenin and naringenin produced by the recombinant strains fed p-coumaric acid. (C) Luteolin and eriodictyol produced by the recombinant strains fed caffeic acid. (D) UV absorbance spectra of authentic compounds. (E) Standard compounds separated by using HPLC profile 2. (F) Chrysin, apigenin, pinocembrin, and naringenin produced by recombinant strain INV-4G+FSI fed cinnamic acid. The insets show the UV-visible spectra of flavonoid substances produced by the recombinant strains superimposed with the spectra of the authentic compounds.
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TABLE 3. Comparison of flavonoid production by recombinant yeast strains grown in SC-LeuTrp minimal medium with raffinose as the carbon source or in MA-LeuTrp minimal medium with acetate as the carbon sourcea
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Overall, these results demonstrated that acetate is a better carbon source for flavone biosynthesis and that flavone production by recombinant yeast can be a competitive alternative to the method currently used, plant extraction. To further prove the last point, we extracted apigenin and luteolin from parsley leaves (in which flavones are produced via the FSI route) and snapdragon petals (in which flavones are produced via the AFNS2 route). Approximately 3 mg of apigenin and 0.01 mg of luteolin per mg of leaves were extracted from parsley, and 0.2 µg of apigenin and 0.05 µg of luteolin per mg of petals were extracted from snapdragon. In both cases, no chrysin was identified.
Regulation of flavanone biosynthesis by flavones.
We tested the possibility that flavanone biosynthesis is feedback inhibited by apigenin because a 50% increase in production of apigenin in the FSI expression strain (compared with the AFNS2 analog) reduced naringenin accumulation by 480%. More specifically, as shown in Fig. 3A and B, in the stationary phase the levels of apigenin and naringenin production were 3 mg/liter and 2.4 mg/liter, respectively, for INV-4G+FSI and 2 mg/liter and 14 mg/liter, respectively, for INV-4G+AFNS2. Adding caffeic acid to both recombinant strains resulted in similar production of luteolin and accumulation of eriodictyol (Fig. 3C and D).
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FIG. 3. Flavone and flavanone biosynthesis by two yeast recombinant strains. (A) Biosynthesis of apigenin from p-coumaric acid; (B) biosynthesis of naringenin from p-coumaric acid; (C) biosynthesis of luteolin from caffeic acid; (D) biosynthesis of eriodictyol from caffeic acid. , INV-4G+FSI; , INV-4G+AFNS2+CPR1. All fermentations were carried out in SC-LeuTrp minimal medium with raffinose as the carbon source.
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FIG. 4. Flavanone production by yeast recombinant strain INV-4G. (A) Naringenin produced from p-coumaric acid in the presence of various concentrations of apigenin; (B) eriodictyol produced from caffeic acid in the presence of various concentrations of luteolin. , 1 mg/liter of flavone; , 3 mg/liter of flavone; , 10 mg/liter of flavone; , control (no flavone).
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The use of acetate as a sole carbon source led to overall increases in flavone-specific production that were as great as 515% in the case of chrysin produced by strain INV-4G+FSI (Table 3). We tested acetate because recently Daran-Lapujade et al. demonstrated that growth of yeast on acetate led to a 24-fold increase in the carbon flux through acetyl-CoA synthase, the enzyme that converts acetate to acetyl-CoA (6, 33). This was the greatest increase in acetyl-CoA synthase flux observed in that study for all of the different carbon sources tested. Since we have hypothesized that malonyl-CoA, a flavonoid precursor, is a limiting metabolite in overall flavonoid biosynthesis, we believe that the observed increase in flavone specific production was a direct consequence of an increase in the amount of the intracellular malonyl-CoA pool directly derived from acetyl-CoA.
The recombinant yeast strains also provided insight into the regulation of flavone biosynthesis. The INV-4G+FSI strain generated approximately 50% more apigenin and six times less naringenin than INV-4G+AFNS2+CPR1. To explain this phenomenon, we demonstrated that apigenin inhibited naringenin biosynthesis in a dose-dependent manner. Moreover, we demonstrated that there was a nonlinear relationship between the apigenin concentration and the total amount of naringenin produced by the recombinant flavanone biosynthetic pathway. On the other hand, eriodictyol synthesis did not decrease when luteolin was present. It is possible that apigenin, a stable analog of 2',4,4',6'-tetrahydroxychalcone, could act as a competitive inhibitor of 4-coumaroyl-CoA binding in the condensation reaction catalyzed by CHS.
Overall, the relatively low plant flavone contents (3 mg and 2 µg total flavones per mg of parsley and snapdragon tissue, respectively) could be a barrier for commercial large-scale production. In that respect, the results presented in this study demonstrate that recombinant yeast can be a competitive alternative to plant extraction for flavone production, without excluding the possibility of further optimization through further increases in the malonyl-CoA pool. One of our immediate goals is to test the effect of acetyl-CoA carboxylase (the enzyme that converts acetyl-CoA to malonyl-CoA) overexpression on flavone biosynthesis. Considering the nonlinear response of this enzyme activity to gene copy number and its complicated transcriptional regulation in E. coli (14, 18), such work may prove to be more challenging than initially expected.
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We thank Stefan Martens (Philipps-Universität Marburg, Germany) and Lixuan Huang (DuPont Central Research and Development, United States) for helpful discussions and suggestions. We also thank Amalia Koffas for providing her experience in plant cultivation.
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