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Applied and Environmental Microbiology, February 2005, p. 1051-1057, Vol. 71, No. 2
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.2.1051-1057.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Civil Engineering and Geological Sciences, University of Notre Dame, Notre Dame, Indiana,1 Institute of Water Quality Control and Waste Management, Technical University of Munich, Garching, Germany2
Received 6 July 2004/ Accepted 27 August 2004
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Microbial aggregates form biofilms by creating a network of cells and extracellular polymeric substances (EPS), which include any substances of biological origin (9). The abbreviation "EPS" has often been expanded to extracellular polysaccharides or exopolysaccharides. However, EPS have been shown to be a rich matrix of polymers, including polysaccharides, proteins, glycoproteins, nucleic acids, phospholipids, and humic acids. EPS are typically reported to aid in the formation of a gel-like network that keeps bacteria together in biofilms, cause the adherence of biofilms to surfaces, and protect bacteria against noxious environmental conditions (24).
Because EPS are a major component of cell flocs and biofilms, they are hypothesized to play a central role in all types of biofilm formation, including flocculation and granulation. It is not fully understood what factors increase EPS formation, although several researchers hypothesize that hydraulic shear may contribute (21). Tay et al. (21) reported that increased aeration rates in a granular SBR resulted in an increased polysaccharide content and that granular sludge disintegrated when polysaccharides were lost from the system. Aerobic granules have also failed to form in systems with reduced aeration rates (6, 22). Researchers concluded that hydrodynamic shear force increases the production of cellular polysaccharides, which aid in the formation and stability of aerobic granules (11). However, several arguments exist against shear force being the necessary factor for granule formation. Most notably, granules were not stable in airlift reactors operated with longer settling times and high aeration rates (2). Therefore, the relationship between shear force, EPS formation, and granule stability is unclear.
In the present experiment, two SBRs were operated with the same aeration rate and superficial upflow gas velocity but with two different settling times. Long and short settling times were utilized to form flocculent and granular sludge, respectively, under the same shear conditions. The EPS were extracted at steady-state to determine whether the polysaccharide and protein contents varied between flocculent and granular sludge produced under the same aeration rate, and several extraction methods were compared. Intact, hydrated flocs and granules were also fluorescently stained to visualize the distribution of cells, polysaccharides, and proteins in situ.
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Analytical procedures.
MLSS and volatile suspended solid (VSS) content, effluent and volatile suspended solid (ESS and EVSS, respectively) content, and the sludge volume index (SVI) were measured one to three times per week, all according to APHA standard engineering methods (4). Substrate removal was measured weekly by the COD during the cycle and in the effluent by using Dr.Lange COD kits (according to the colorimetric COD standard method) (Dr.Lange GmbH, Düsseldorf, Germany). The specific oxygen uptake rate (SOUR) during a cycle was measured weekly during startup, and the endogenous SOUR was measured twice a week (4, 12). Endogenous oxygen uptake rate (OUR) samples were collected from the end of the react cycle and aerated for at least 2 h before the OUR measurement, whereas beginning and end of the react OUR samples were measured immediately after sampling. The development of flocs and granules was observed by using a stereomicroscope (Leica Wild MPS 46/52; Leica, Vienna, Austria), and images were obtained with an attached Kodak digital camera.
EPS extraction and chemical analysis.
EPS was characterized from nonhomogenized and homogenized samples by two extraction methods: the use of cation-exchange resin (Dowex) and alkaline treatment with heat (NaOH).
Sample pretreatment.
Approximately 0.5 g volatile solids (VS) were taken from each reactor at the end of the SBR cycle. The reactor volume taken for the 0.5 g of VS was estimated from previous VSS measurements. The actual mass of VS sampled for EPS extraction was determined from the MLSS and VSS contents measured at the time of sampling. The sample was centrifuged at 4°C and 10,000 rpm for 15 min. The supernatant was collected to determine chemical composition of reactor wash and loosely bound EPS. The samples were resuspended in Milli-Q water and centrifuged again. For nonhomogenized samples, the remaining pellet was resuspended in phosphate buffer (7) to a total volume of 100 ml. For homogenized samples, the pellet was resuspended in 40 ml of phosphate buffer and divided into two aliquots. Each aliquot was homogenized for 10 min in a homogenizer (RW 20 DZM; Janke & Kunkel, Staufen, Germany) at a maximum rpm of 980, and the two homogenized parts were combined with phosphate buffer to a 100-ml total volume.
Cation-exchange resin extraction.
EPS extraction using a Dowex 50x8, Na+ Form, cation-exchange resin (Fluka) was performed with a 0.5 g of VS-to-35 g of cation exchange resin ratio according to the method of Frølund et al. (7). The samples were stirred at 750 rpm for 4 h in the dark at 4°C. A blank sample with cation exchange resin and phosphate buffer (pH 7) was also tested.
NaOH and heat extraction.
Harvested samples (suspended in 100 ml of buffer) were adjusted to pH 11 by using 1 M NaOH and placed in plastic bottles before heating to 80°C for 30 min (modified from Tay et al. [21]). A blank with phosphate buffer adjusted to pH 11 with NaOH was also measured.
EPS harvesting and characterization.
After the Dowex and NaOH extraction, respective samples were centrifuged at 10,000 rpm for 1 min. The supernatant was transferred to clean centrifuge tubes and again centrifuged 10 min. Afterward, cell lysis was measured with a glucose-6-phosphate dehydrogenase kit (Fisher Scientific 345-A), and the remaining EPS supernatant was stored at 20°C in aliquots until chemical analyses were performed. Total organic carbon (TOC) was measured by using an Elementar High TOC II (Elementar, Hanau, Germany). Proteins and polysaccharides were measured according to the method of Frølund et al. (7) by using bovine albumin serum and glucose standards, respectively. Cell lysis was measured directly after Dowex EPS extraction by using a glucose-6-phosphate dehydrogenase kit and was negligible. Cell lysis from NaOH EPS extraction could not be measured with the kit, since the kit measures the presence of the glucose-6-phosphate dehydrogenase enzyme. Enzymes are typically active only within a pH range of 5 to 9, and controlled trials with the kit and NaOH extracts (pH 11) were not successful (23).
Fluorescence staining and CLSM.
Intact, living, and hydrated granules and flocs were stained with fluorescently labeled probes with different excitation and emission spectra in order to visualize the distribution of cells, polysaccharides, and proteins in samples. After being stained, whole samples were either visualized directly by confocal laser scanning microscopy (CLSM; LSM510 META; Zeiss, Jeve, Germany) or embedded in cryosectioning compound (Microm, Walldorf, Germany) and cryosectioned into 20-µm sections (CM 3050S Kryostat; Leica, Bensheim, Germany) for direct visualization.
Staining.
Samples were stained in 1.5-ml Eppendorf tubes, covered with aluminum foil, and placed on a shaker table (100 rpm) for 15 min each. Fluorescein-isothiocyanate (FITC) (0.01%) is an amine reactive dye and stains all proteins and amino-sugars of cells and EPS (19). Concanavalin A (ConA) lectin conjugated with Texas Red (100 µg ml1) was used in the present study to bind to
-mannopyranosyl and
-glucopyranosyl sugar residues. Syto 63 is a cell-permeative nucleic acid stain and was used to visualize all cells. All probes were purchased from Molecular Probes, and samples were washed with phosphate-buffered saline after each staining step. Granules were stained before and after cutting them in half in order to rule out any diffusion limitation of stains inside the granule structure. Based on these observations and reported diffusion coefficients of similar stains (5), there should have been no biases due to diffusion differences.
CLSM.
The probes were visualized on three channels with corresponding excitations and emissions: FITC (488 nm, BP 505 to 530 nm), ConA (543 nm, LP 560 nm), and Syto 63 (633 nm, LP 650 nm). Z-sectioning was performed on whole granules and rendered three-dimensionally by using the LSM 510 Viewer software (Zeiss).
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FIG. 1. Reactor inoculum and steady-state sludge (day 200) from reactors 1 and 2 (R1 and R2; scale = 1 mm).
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TABLE 1. Steady-state values for standard measurements (days 120 to 220 of operation)
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TABLE 2. EPS component analysis for each extraction method
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FIG. 2. Total TOC of EPS extracted from reactor 1 (flocculent) and 2 (granular) by using each extraction methods. Gray bars represent homogenized samples. Error bars indicate the standard deviations of triplicate extractions.
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In situ EPS staining and fluorescent microscopy.
Fluorescently labeled lectins such as ConA have been used to stain glycoconjugates in heterotrophic, multispecies biofilms, and FITC is an amine reactive dye that stains proteins and other amine-containing compounds (3, 17, 18, 20). These stains may also bind with protein and glycoconjugate groups associated with cell walls, so a counterstain with Syto 63 was used to distinguish EPS from cells. Figure 3 shows the resultant staining from a 20-µm cryosection taken from the middle of a granule (ca. 260 µm below the surface). A freshly sampled granule was stained before sectioning, and fluorescence was viewed on three separate channels for each stain. Figure 3 shows that cells and polysaccharides were restricted to the outer edge of the granule structure, with the cells clustered within 100 µm of the surface. Figure 3C shows that FITC stained proteins throughout the entire granule, with no overlapping of FITC with other stains in the center. At least 10 cryosections were viewed from five different granules, all with similar observations.
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FIG. 3. Fluorescent staining of 20-µm cryosections from a reactor 2 granule. Cells stained with Syto 63 (A), polysaccharides stained with ConA (B), and proteins stained with FITC (C) are shown. Scale bar, 100 µm. Images were obtained with a x10 objective lens.
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FIG. 4. Relative fluorescence of each stain through a 20-µm cryosection, cut 120 µm below the granule surface. The granule edge is marked by a dotted line, and an arrow marks the granule center. Cells (Syto 63) (A) and polysaccharides (ConA) (B) are clustered within the first 200 mm of the granule edge, and proteins (FITC) are distributed unevenly throughout the granule (C).
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FIG. 5. (A) Floc stained with Syto 63 (red), ConA (blue), and FITC (green) and viewed with a x10 objective lens. Scale, 100 µm. The majority of EPS is localized at a flocculent center, whereas some polysaccharides are present around filamentous fungi. (B) Three-dimensional projection of a 130-µm stack of optical sections from the outer edge of a granule. Cells (red) and polysaccharides (blue) are evident. Scale, 100 µm. Cells are embedded in a large polysaccharide matrix.
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min) of 2.4 m h1, formed predominantly flocculent sludge, and reactor 2 (
min of 12 m h1) formed predominantly granular sludge. However, granules were observed in both reactors, indicating that slow settling times do not prevent granule formation but rather prevent granular sludge from becoming dominant in the reactor. The short settling times cause continuous biomass washout, thus affecting species selection over time (14).
EPS extraction and characterization.
The results for EPS content differ strikingly with those reported by Tay et al. (21). For an SBR operated with a superficial gas velocity of 1.2 cm s1, the same as used in this experiment, Tay et al. reported a polysaccharide/protein ratio (PS/PN ratio) of 15. In that experiment, the polysaccharide content was hypothesized to contribute more to the granule structure and stability than the protein content (21). However, in the current experiment, the protein content was much higher than the polysaccharide content. Using a similar extraction method of NaOH and heat for nonhomogenized granules, the protein/polysaccharide ratio (PN/PS ratio) was calculated to be ca. 11 for reactor 2 (see Table 2). This trend was confirmed by methods of homogenization and Dowex cation-exchange extraction for both reactor 1 and 2 samples, and the data were correlated with a short EPS literature review shown in Table 3. For a variety of biofilm types and extraction methods, proteins have been reported more abundant than polysaccharides in EPS.
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TABLE 3. EPS composition of different biofilm samples as determined by different methods
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EPS extraction with alkaline and heat treatment produced much more TOC, proteins, and polysaccharides than Dowex extraction. This increase was most likely due to severe cell lysis caused by the high pH and heat treatment. The extent of cell lysis during extraction is difficult to measure in undefined samples, and the glucose-6-phosphate dehydrogenase kit was not applicable for alkaline samples, since high pH and heat are known to disrupt macromolecules such as enzymes and proteins. Previous studies reported that boiling and addition of NaOH cause severe cell lysis in activated sludge, whereas a few hours of mixing with Dowex does not cause strong lysis (18). The NaOH extraction also produced more total TOC from flocculent EPS (R1) than granular EPS (R2) as shown in Fig. 2, but the Dowex extraction or microscopic staining of polysaccharides and proteins did not confirm this observation. Therefore, extraction with NaOH and heat should be avoided.
Fluorescence staining of EPS and microscopy.
Flocs were comprised of a small center of EPS and cells surrounded by a network of filamentous bacteria and fungi. In contrast, the center of granules was labeled mostly with the protein stain, and cells and polysaccharides were isolated to the outer layer of granules, as shown with the cryosectioning data. This result correlates with another study by DeBeer et al., in which anaerobic flocs and granules were stained for EPS polysaccharide distribution. In loose flocs, the highest concentration of EPS was found in the center, whereas 50% of the EPS in granules was concentrated in a 40-µm layer at the surface (5). This reflects the polysaccharide distribution stained by ConA in aerobic granules, with the outer layer being ca. 100 µm thick.
The center of the granules was mostly stained by FITC, which stains cells or free amino groups. A subsequent counterstaining with Syto 63 resulted in few signals from the granule center, suggesting that the majority of the granule volume was comprised of noncellular material. The origin of this material can be inferred by the microscopic staining of flocs and smaller granules, in which the flocculent center is comprised of cells and EPS together. The bacteria in these aggregates continue to grow, creating an ever-larger granule. As the particle size increases, so does the mass transfer limitation of oxygen within the outer layer of active biomass (8). Mass transport limitations eventually create various layers of aerobic, anaerobic, and dead biomass within granules. The aerobic layer of biomass has been reported to be 800 µm in diameter, which is much longer than observed in the present study (20). Therefore, the exact structure of aerobic granules is probably dependent on reactor operation, species selection, and biofilm growth morphology. The general observations suggest that granule centers are comprised of old aggregates of dead or dormant biomass and EPS, thus explaining the uneven distribution of FITC throughout the granule structure.
The cells on the outer edge of granules are embedded in a large network of polysaccharides stained by ConA (Fig. 5), which were all counterstained by FITC and Syto 63. The microscopic results suggest that the outer, active layer of cells excrete EPS with a large proportion of polysaccharides. The center of the granule was mostly stained by FITC but not by Syto 63. Therefore, the center could be composed of dead cells, which have leaked proteins and other amine-containing compounds into the granule center. The chemical extraction of EPS does not distinguish between proteins excreted by dead cells or live cells. Therefore, chemical extraction from granules is bound to contain some proteins and polysaccharides released from dead cells at the center, which may constitute a large percentage of the total structure for a large granule. Given this consideration, the comparison of chemical EPS extraction data from different biofilm structures (flocs and granules) is difficult. Microscopic staining can be used in conjunction to understand the distribution of EPS in situ, providing insight that the polysaccharides are significant components of EPS in the outer edges of granules, although they are but a small fraction of the total TOC extracted. Unfortunately, quantification of staining is difficult due to the specificity of lectins, which stain specific configurations of sugar residues, and the nonspecificity of FITC, which stain all amino groups.
Overall.
The method used for chemical extraction of EPS affects the total TOC, proteins, and polysaccharides extracted. Homogenization before extraction releases more total EPS from granule samples and has only a small effect on flocculent samples. Hot alkaline treatment with heat causes cell lysis that contaminates EPS with much higher levels of both proteins and polysaccharides than EPS extracted with cation-exchange resin. When comparing samples with different surface area/volume ratios are being compared, homogenization should be performed before chemical extraction in order to prevent method bias. Microscopic results showed that granular sludge has an outer layer (ca. 200 µm thick) of biomass and EPS containing large amounts of polysaccharides. The center of the granule contained proteins as the major component and intact cells and polysaccharides to a lesser extent.
We thank the MedTech Institute, Technical University of Munich, for the use of the Leica Kryostat.
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