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Applied and Environmental Microbiology, February 2005, p. 912-920, Vol. 71, No. 2
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.2.912-920.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Laboratoire de Chimie Physique et Microbiologie pour l'Environnement (LCPME), UMR 7564 CNRS/Université Henri Poincaré-Nancy I, Nancy, France1
Received 18 May 2004/ Accepted 23 September 2004
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Viral inactivation results from an alteration of the viral capsid or genome. The result is a reduction in the number of infectious units which requires cell culture for quantification (16, 30, 39). The capacity of a virus to survive depends on its serotype and on the physical (e.g., temperature), chemical (e.g., pH and salinity), and biological (e.g., microorganisms) properties of the environment (9, 13, 14, 18, 20, 32, 46). For example, temperature is recognized as the principal factor affecting viral survival (20, 47). Studies devoted to viral survival are classically conducted in vitro using an appropriate viral model (e.g., Poliovirus 1, Adenovirus 40 and 41, hepatitis A virus), a natural (e.g., drinking water, seawater, river water) or artificial (e.g., buffer) aqueous environment, and a container (e.g., polypropylene, glass). Viral inactivation is then defined by following the time course of infectious virus in the aqueous phase. The time required for 90% of the infectious viral units to disappear (T90) is determined when the survival curve is log linear. More generally, viral survival is expressed as a rate of loss in function of time. Using this approach, adhesion-aggregation phenomena are either considered negligible or ignored.
Adhesion-aggregation depends (i) on the viral serotype and, more particularly, the viral surface charge (8, 12, 17, 21, 27, 43), (ii) on chemical properties of the medium such as pH, ionic strength, and the nature of the ions present (3, 11, 23, 26, 40, 43, 48), and finally, in the event of adhesion, (iii) on the nature of the adsorbing surface which in turn is described in terms of surface charge and hydrophobicity (17, 44). Viral adhesion-aggregation processes are reversible (3, 10, 25, 27, 43), and certain authors have described increased survival for adsorbed or aggregated viruses (2, 10, 17, 37). The relative significance of each of these adhesion-aggregation processes can be estimated from cell culture by quantifying the decline in infectious viral particles present in the aqueous phase (11, 29, 40). This is generally conducted in vitro over a short time period and under conditions in which viral inactivation can be neglected.
There have been few studies that have considered viral inactivation and viral adhesion-aggregation simultaneously, making it difficult to obtain a reliable estimate of the relative contribution of each process in a given system. When their effects are studied separately, all three phenomena, adhesion, aggregation, and inactivation, result in a decrease of infectious viral units in water. Consequently, in the presence of adhesion-aggregation phenomena, measuring viral decrease could produce an overestimation of inactivation processes (i.e., an underestimation of viral concentration). The same type of overestimation could result from measuring adhesion-aggregation in the presence of inactivation phenomena.
From a purely technical point of view, it would also be interesting to examine viral behavior in water held in a hydrophobic container because (i) marketed waters are generally stored in hydrophobic containers (e.g., terephthalate polyethylene) (19) and (ii) polypropylene containers have often been used for definitions of viral survival in different waters (1, 9, 16, 41, 45, 47).
The purpose of this work was thus to define the relative importance of inactivation, adhesion, and aggregation phenomena in a reference system composed of groundwater (GW), Poliovirus 1, and a polypropylene container. The overall behavior of viral particles in the reference system at 20°C was first compared with that in a system where the GW was replaced by phosphate buffer. Adhesion-aggregation phenomena in GW were then demonstrated using two approaches. The first consisted of an attempt to reproduce in phosphate buffer the kinetics observed in GW by adjusting parameters (pH, divalent ions) recognized as having an effect on the adhesion-aggregation processes. The second consisted of an attempt to reverse these processes in GW. Finally the kinetics of viral adhesion to a polypropylene container were examined.
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Quantification of infectious virus by cell culture.
Each sample was treated with an antibiotic and antimycotic solution (catalog no. A5955; Sigma) for 2 h at 37°C. Quantification of infectious Poliovirus 1 was performed in 96-well microplates with buffalo green monkey kidney cells. A total of 50 µl of three successive logarithmic dilutions of each sample was added to 200 µl of 7.5 x 104 cells/ml in minimum essential medium containing 2% fetal calf serum. Each dilution was seeded in 40 wells. The plates were incubated for 6 days at 37°C in a 5% CO2-95% air atmosphere and then examined for cytopathic effect. The number of wells with a cytopathic effect were counted, and the MPNCU was calculated (28).
Viral genome quantification. (i) Viral RNA extraction.
Viral RNA was extracted using a QIAmp viral RNA kit (catalog no. 52904; QIAGEN). In aqueous phase, viral RNA was extracted from the total volume (1 ml). This required some adaptation of the manufacturer's instructions. Lysis buffer (AVL) and ethanol (96 to 100%) volumes were proportionally increased. On polypropylene support, RNA was extracted by adding 1 ml of lysis buffer into the vial after the aqueous solution had ben removed. After shaking (vortexing) and contact time of 15 min, the suspension was transferred in 1 ml of 95% ethanol. For both aqueous phase and support, the suspension was filtered on the QIAmp spin column in a vacuum to adsorb RNA. After washing steps, RNA was eluted in 60 µl of elution buffer.
(ii) Primers and probes.
The primers and probe (Table 1) were previously described (16).
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TABLE 1. Primers and probe designed with Primer Express software version 1.0 and used in the Poliovirus 1 fluorogenic RT-PCR assay
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(iv) Real-time PCR.
PCR assay was done using 5 µl of cDNA in a final volume of 50 µl containing 25 µl of Taqman Universal Master Mix (catalog no. 4304437; PE Biosystems), 14.5 µl of nuclease-free water, forward (Ent-f) and reverse (Ent-r) primers at a final concentration of 0.5 µM, and a Taqman probe (Ent-p) at a final concentration of 0.3 µM. Amplification and detection were performed with an ABI Prism 7700 sequence detection system (Perkin Elmer Inc.). The amplification ramp included two hold programs, (i) 2 min at 50°C to activate the uracil N'-glycosylase followed by (ii) 10 min at 95°C to release the activity of the hot start DNA polymerase, followed by the repetition of 50 cycles of 15 s at 95°C and 60 s at 60°C. Real-time fluorescence measurements were obtained and directly analyzed using ABI prism 7700 sequence detection system software. The threshold cycle (CT) value for each sample generated was calculated by determining the point at which fluorescence exceeded a threshold limit.
Media.
Phosphate-buffered saline (PBS) (catalog no. 75511; Biomérieux) containing 7.650 g of NaCl/liter, 0.724 g of disodium phosphate/liter, and 0.210 g of monopotassium phosphate/liter was adjusted to different pH levels (5.1, 6.6, 7.2, 7.8, and 8.3) and sterilized by autoclaving. In some cases sterile MgCl2 was added at a final concentration of 0.033, 0.005, 0.0033, or 0.00033 M. In this case pH was readjusted after MgCl2 addition.
The concentrations of ions and compounds of the GW used in this study and determined by International Organization for Standardization procedures were as follows: Ca2+, 97 mg/liter; Mg2+, 21 mg/liter; Na+, 8.68 mg/liter; K+, 5.24 mg/liter; Fe2+, 0.390 mg/liter; Mn2+, 0.040 mg/liter; SO42, 128 mg/liter; HCO3, 256 mg/liter; Cl, 4.6 mg/liter; PO43, <0.01 mg/liter; SiO2, 8.1 mg/liter; NO3, <0.1 mg/liter; NO2, <0.01 mg/liter, and NH4+, 0.01 mg/liter. The conductivity of this water was 645 µS/cm, and the pH was measured in the laboratory at 7.8. This water comes from a deep well in the Bundsandstein sandstone situated in northeast France. By analogy with the mineral water classification scheme (31), this water can be considered to be of low-mineral-water content.
The same GW with the autochthonous microbial flora was previously used in a study examining virus survival (16). The autochthonous flora was not characterized, but the influence of this flora was defined by comparing Poliovirus 1 behavior in GW filtered using a 0.22-µm-pore-size filter (Millipore MillexR-GS) to that seen with unfiltered GW.
STE.
In a previous study (16), the persistence of Poliovirus 1 in comparison to that of Norovirus coming from human stools was estimated. To study the effect of this STE on virus behavior, the same extract used in a previous study (16) and kept frozen at 70°C was added to the PBS or GW. This STE was prepared as follows. The stool sample was diluted to 10% suspension in PBS, mixed with an equal volume of 1,1.2-trichloro-1,2.2-trifluoroethane, and clarified by centrifugation for 20 min at 500 x g. The supernatant was diluted 1/100 in GW or in PBS.
Experimental protocol.
A total of 100 ml of PBS or GW was seeded with Poliovirus 1 to obtain a final concentration of 105 MPNCU/ml. The 100-ml samples were homogenized 15 min at 20°C and distributed in 1-ml polypropylene vials (catalog no. 33 606 01; Polylabo), which were placed in the dark at 20°C. At sampling time, vials were removed from incubation and stored at 70°C until analysis by cell culture and real-time RT-PCR were performed. In cases in which the viral decrease as a function of time could be represented with a linear model, the slopes were statistically compared using Student's t test and a threshold of 5%.
To study reversibility of adhesion-aggregation processes, several vials were taken after 30 days of incubation and submitted to different treatments. Several surfactants were tested: sodium dodecyl sulfate (SDS) (catalog no. 27926238; Prolabo), an anionic detergent, was used at a final concentration of 10 mM, and Tween 80 (catalog no. 28830291; Prolabo) and Triton X-100 (catalog no. T-8787; Sigma), nonionic detergents, were used at a final concentration of 0.1%. In addition, fetal calf serum (catalog no. 010062; Eurobio) was used at a final concentration of 10% and urea (catalog no. 018228; Eurobio) was used at a final concentration of 10 mM. The desired pH was obtained by adding 1 M HCl and 1 M NaOH. After each treatment, tubes were briefly shaken with a vortex and kept at 20°C for 3 h before storage at 70°C until analysis by cell culture. Some of the treatments applied (SDS and Triton X-100) are toxic for cells used for quantifying infectious Poliovirus 1 at up to a 10-fold dilution (a 100-fold dilution has no toxic effect).
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FIG. 1. Persistence of infectious Poliovirus 1 and its genome at 20°C in GW and PBS at pH 7.2 (PBS). Nx/N0 is the ratio of the quantity of infectious viral particles at time x over the quantity of infectious viral particles at time 0. Qx/Q0 is the ratio of the quantity of viral genomes at time x over the quantity of viral genomes at time 0.
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Occurrence of adhesion-aggregation processes.
Two strategies were developed to determine whether adhesion-aggregation processes were responsible for a significant part of the viral particle loss in GW.
The first strategy consisted of an attempt to reproduce in PBS the kinetic pattern observed in GW. This was done by adjusting parameters (pH, divalent ions) recognized as affecting adhesion-aggregation processes. In addition, the effect of STE was studied.
Loss of infectious Poliovirus 1 was monitored in PBS at pH 5.1, 6.6 (the isoelectric point of Poliovirus 1), 7.2, 7.8 (pH of GW), and 8.3. The results presented in Fig. 2 show that the patterns of viral loss were not significantly different (P > 0.05) when pH was held at 7.2, 7.8, and 8.3 (r2 values were 0.96, 0.93, and 0.97 and T90 values were 31.3, 28.6, and 28.5 days, respectively). The patterns observed at pH 6.6 and 5.1 were significantly different from the patterns observed at the other pH values and similar to the pattern observed in GW. Therefore, holding the pH at the isoelectric point of the virus, a factor known to favor adhesion-aggregation processes, or at a level below the isoelectric point induced viral particle behavior in PBS similar to that observed in GW. Nevertheless, the pattern of viral loss observed in GW cannot be explained by pH because the pH of GW is 7.8.
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FIG. 2. Persistence of infectious Poliovirus 1 at 20°C in GW and PBS at different pHs (5.1, 6.6, 7.2, 7.8, and 8.3). Nx/No is the ratio of the quantity of infectious viral particles at time x over the quantity of infectious viral particles at time 0.
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FIG. 3. Persistence of infectious Poliovirus 1 at 20°C in GW and in PBS at pH 7.8 in the presence of increasing concentrations of MgCl2 (0.00033 to 0.033 M). Nx/No is the ratio of the quantity of infectious viral particles at time x over the quantity of infectious viral particles at time 0.
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FIG. 4. Persistence of infectious Poliovirus 1 at 20°C in GW and in PBS in the presence or absence of STE. Nx/No is the ratio of the quantity of infectious viral particles at time x over the quantity of infectious viral particles at time 0.
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TABLE 2. Viral concentration after 30 days of incubation in GW at 20°C with different treatments before analysis by cell culturea
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FIG. 5. Decrease of infectious Poliovirus 1 levels at 20°C in GW with (GW+SDS) or without an SDS treatment before analysis by cell culture. Nx/No is the ratio of the quantity of infectious viral particles at time x over the quantity of infectious viral particles at time 0.
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FIG. 6. Relative proportions of viral genome in the aqueous phase (Q-aqueous) and adhering to the container (Q-container) at 20°C in GW, PBS at pH 7.2, and GW with STE (GW+STE).
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Adhesion of viral particles to the hydrophobic walls of the container was clearly the major phenomenon operating in the system studied. Quantitatively significant (1.5 log10) viral transfer from the aqueous phase onto the hydrophobic walls occurred during the first 20 days of incubation. The process was undoubtedly favored by the presence of divalent ions in our GW, but in other GW such a process can be favored by a pH below or equivalent to the viral isoelectric point. Major adhesion of viruses to the walls of different container materials has been already reported (7, 29, 40, 42, 45). Taylor et al. (40) observed in a synthetic water-Poliovirus 2-polypropylene support system that when the pH fell below 7, 90% of the viral particles adhered to the supporting walls. Ward and Winston (45) reported the same phenomenon with Poliovirus 1 and GW in a polypropylene container. In contrast, Biziagos et al. (5), who also worked with Poliovirus 1 and GW, were unable to demonstrate adherence. The explanation might lie in the difference in divalent cation concentrations (16.4 mg/liter versus 119 mg/liter in the GW used for the present study). The type of salts involved and their concentration in the medium are known to affect adsorption (3, 17, 26, 36).
Earlier work on the behavior of different viruses (Poliovirus 1, Norovirus, and Feline Calicivirus f9) has been conducted with the same GW used for the present study (16). These authors, who monitored viral concentration in water in the presence of diluted STE, did not examine adhesion-aggregation processes, interpreting their survival curves solely as the result of the effects of viral inactivation or genome degradation. In the light of our present findings, this was justified because our results show that the presence of STE (which was exactly the same as used by Gassilloud et al.) (16) inhibits adhesion to the container. Inhibition of viral adhesion to the hydrophobic container could have two explanations. Organic matter present in the STE might saturate sites of adsorption on the polypropylene walls, thus preventing viral adhesion. The saturation would result from a competition between the organic matter and the virus for adhesion sites (7, 17, 24, 33). This mechanism was used to elute viruses adsorbed on membranes (27) or in protocols for concentrating viruses from water, as a lot of elution buffer contains beef extract (6, 34). Another explanation could be that suspended matter in the STE could also be preferential adsorption sites for the virus (4, 7, 38). Here, the viruses remain in the aqueous phase but are adsorbed on suspended matter contained in the STE. In fact, under some conditions, such as those we used, it is clear that adding the STE reduced viral loss as a function of time, not because of a protective effect but just because it inhibits adhesion processes.
In our experimental conditions, viral inactivation also played a significant role in viral loss. There are two ways to estimate its effect.
The first is to consider the PBS medium at pH 7.2 as a reference system in which adhesion-aggregation phenomena are negligible. This is present practice when the viral survival curve is log linear. In our case, the coefficient was 0.96 and the T90 was 31.3 days. Thus, if adhesion-aggregation were considered negligible, the observed improvement in viral persistence after adding STE (T90 = 52.6 days) would correspond to another protective effect. In this case, adhesion-aggregation processes also provide a protective effect, as the T90 obtained after SDS treatment (46.7 days) is higher than that obtained with PBS (31.3 days). A protective effect due to viral adsorption or aggregation (2, 10, 17, 21, 37) or to the presence of organic matter (4, 9, 22) has been previously suggested. But this protective effect can be discussed, since other researchers have been unable to demonstrate a significant improvement in the survival of adsorbed viruses exposed to inactivating agents such as heat (15, 35). With PBS used as a reference for inactivation at 20°C, it can be considered that if the inactivation process was similar in GW it was responsible for 0.64 log10 viral loss (calculated using T90 in PBS) during the first 20 days.
Our study also led to a second hypothesis, which considers that adhesion-aggregation phenomena are less significant in PBS than in GW but are still active and sufficient to lower the T90. This would explain why adhesion-aggregation processes in GW inhibited by STE (T90 = 46.1 days) or reversed by SDS (T90 = 46.7 days) yielded a T90 equivalent to that of PBS+STE (T90 = 52.6 days; nonsignificant adhesion-aggregation) but not to that of PBS alone (T90 = 31.3 days; significant adhesion-aggregation). Consequently, the systems allowing evaluation of the proportional effect of viral inactivation were the systems containing STE or treated by SDS (T90 = 46.1 or 52.6 days). The inhibition of adhesion-aggregation processes could explain the contradictory results with respect to the possible protective effect of organic matter or suspended solids.
Whatever the hypothesis under consideration, it can be assumed that viral inactivation after 20 days represents a decrease between 0.38 log10 (medium containing STE as reference) and 0.64 log10 (PBS pH 7.2 as reference).
The greater part of the 2.8 log10 loss in infectious Poliovirus 1 observed at 20 days in GW held at 20°C can be considered to result from adhesion phenomena (1.5 log10). Since viral inactivation accounted for 0.38 to 0.64 log10 loss, aggregation can be considered to be responsible for 0.66 or 0.92 log10 loss.
In conclusion, this study demonstrates clearly that estimating viral survival in a given system must always take into consideration adhesion-aggregation phenomena. Future experiments examining viral inactivation should be designed to minimize or correct for adsorptive and aggregative losses. These processes may be the major mechanism of viral loss in the aqueous phase, and since they are reversible, may be a source of underestimation of viral survival in certain studies.
From a practical point of view, the reality of massive adhesion of viruses to the hydrophobic container in a GW implies taking into account adsorbed viruses when virological analysis of GW bottled in a hydrophobic material (terephthalate polyethylene) is conducted. Protocols should be defined for practical applications.
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