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Applied and Environmental Microbiology, June 2005, p. 3163-3170, Vol. 71, No. 6
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.6.3163-3170.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Biology, SCA 110, University of South Florida, 4202 E. Fowler Ave., Tampa, Florida 33620,1 Department of Civil and Environmental Engineering, ENB 118, University of South Florida, 4202 E. Fowler Ave., Tampa, Florida 33620,2 Biological Consulting Services of N. Florida, Inc., 4641 N.W. 6th Street, Suite A, Gainesville, Florida 32609,3 Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida 32611,4 Department of Fisheries and Wildlife and Crop and Soil Sciences, 13 Natural Resources Building, Michigan State University, East Lansing, Michigan 488245
Received 27 September 2004/ Accepted 20 December 2004
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40%; and enteric viruses, 31%. Cryptosporidium oocysts and Giardia cysts were detected in 70% and 80%, respectively, of reclaimed water samples. Viable Cryptosporidium, based on cell culture infectivity assays, was detected in 20% of the reclaimed water samples. No strong correlation was found for any indicator-pathogen combination. When data for all indicators were tested using discriminant analysis, the presence/absence patterns for Giardia cysts, Cryptosporidium oocysts, infectious Cryptosporidium, and infectious enteric viruses were predicted for over 71% of disinfected effluents. The failure of measurements of single indicator organism to correlate with pathogens suggests that public health is not adequately protected by simple monitoring schemes based on detection of a single indicator, particularly at the detection limits routinely employed. Monitoring a suite of indicator organisms in reclaimed effluent is more likely to be predictive of the presence of certain pathogens, and a need for additional pathogen monitoring in reclaimed water in order to protect public health is suggested by this study. |
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A major goal of wastewater reclamation facilities is to reduce pathogen loads in order to decrease public health risks associated with exposure. The effectiveness of pathogen control is indirectly assessed through routine monitoring of the reclaimed water (final effluent) by using grab samples to detect standard indicator bacteria such as total or fecal coliforms. Treatment practices for production of reclaimed water vary depending on the ultimate intended use(s) of the water and local regulatory requirements. Currently, there are no universal standards governing the production and quality of reclaimed water, although the World Health Organization has developed guidelines for the use of reclaimed water (35) that recommend monitoring fecal coliforms and intestinal nematodes. In the United States, there are no federal standards controlling the quality of reclaimed water, and individual states have developed guidelines or implemented specific treatment and monitoring requirements that are intended to protect the public from exposure to pathogens. Due to the inherent constraints associated with pathogen monitoring, indicator organisms are employed as surrogates for pathogens. In some states, total coliform bacteria are used as the indicator organism (6); however, in the majority of states that have specific regulations, the microbiological safety of reclaimed water is evaluated by daily monitoring of fecal coliform bacteria in the disinfected effluent based on a single, 100-ml grab sample (3). In addition, periodic monitoring of viruses and/or protozoan pathogens has been required by a few states, including Arizona, California, and Florida (3).
It has been widely demonstrated that coliform bacteria do not adequately reflect the occurrence of pathogens in disinfected wastewater effluent due to their relatively high susceptibility to chemical disinfection (18) and failure to correlate with protozoan parasites such as Cryptosporidium (5) and enteric viruses (13). Alternative microbiological indicators have been suggested for evaluation of wastewater, drinking water, and environmental waters, including Enterococcus spp. (18), Clostridium perfringens (9, 20), and coliphages (8, 10, 20).
To date, there have been only a few studies of reclaimed water in which the levels of indicator organisms have been directly compared to those of viral, bacterial, or protozoan pathogens at each stage of treatment (23, 24). In this work, the validity of using coliform bacteria and alternative microbial indicators to predict the presence or absence of pathogens, and thus to assess the public health risk, was evaluated using disinfected effluent from six wastewater reclamation facilities in the United States. The facilities varied in location (Arizona, California, and Florida), size, and treatment practices and were each sampled at least five times over a 1-year period. Each sample was analyzed for a suite of indicator bacteria, coliphages, enteric viruses, and protozoan pathogens, and predictive relationships among the microbial groups were evaluated by several statistical methods, including binary logistic regression and discriminant analysis (DA).
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TABLE 1. Comparison of wastewater reclamation facilities sampled for indicator organisms and pathogens in this study
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Sample volumes collected for bacterial enumeration were 50 ml of influent, 500 ml from the secondary clarifier, 2 liters of effluent from the filtration stage, and 2 liters of disinfected effluent. Assays were performed in triplicate. Large volumes (up to 53 liters) were filtered for protozoan parasite and virus assays. Detection limits for bacterial indicators in disinfected effluent were 0.2 to 0.6 CFU · 100 ml1, those for coliphages were 10 PFU · 100 ml1, those for enteric viruses were 0.3 to 1.4 most probable number (MPN) · 100 liters1, those for Cryptosporidium oocysts were 2.0 to 6.9 oocysts · 100 liters1, those for infectious Cryptosporidium were 0.29 to 4.1 MPN · 100 liters1, and those for Giardia were 1.8 to 5.2 cysts · 100 liters1.
Bacterial enumeration.
Indicator bacteria were quantified by membrane filtration using 47-mm cellulose acetate filters with a nominal pore size of 0.45 µm. Total coliform bacteria were cultured on mEndo LES agar (Difco, Sparks, MD) for 24 h at 37°C. Colonies that produced a green sheen were enumerated as total coliforms (2). Fecal coliform bacteria were cultured on mFC agar (Difco, Sparks, MD) for 24 h at 44.5°C in a water bath. Blue colonies were enumerated as fecal coliforms (2). Escherichia coli (ATCC 9637) was used as the positive control for all coliform measurements. Enterococci were cultured on mEI agar (31, 32). Plates were incubated at 41°C for 24 h, and colonies with a blue halo were enumerated as enterococci. Enterococcus faecalis (ATCC 19433) was used as a positive control. Clostridium perfringens was isolated on mCP agar (Acumedia Manufacturers, Inc.) (4). Plates were transferred to gas pack bags (BBL GasPak; Becton Dickinson) and sealed. After 24 h of incubation at 45°C, colonies were exposed to ammonium hydroxide fumes. All of the yellow/straw-colored colonies that turned pink/magenta were counted. C. perfringens (ATCC 13124) was used as a positive control.
Bacteriophage analysis.
Coliphages were analyzed by the agar overlay method of Adams (1). Two E. coli host strains were used in separate assays: E. coli HS (pFamp) R (ATCC 700891), which infects male-specific (F+) coliphages very efficiently and somatic coliphages poorly (8), and E. coli C3000 (ATCC 15597), which should host both somatic and F+ coliphages (14). Serial dilutions of samples were made in phosphate-buffered saline according to expected phage concentrations at each treatment step. Five replicate volumes of 0.1 ml to 2 ml were plated for each dilution, except in the case of the disinfected effluent samples, for which 10 replicates of 2 ml each were plated. PFU · 100 ml1 were calculated after 24 h of incubation (2).
Enteric viruses.
The U.S. Environmental Protection Agency (EPA) methodology (30) was used for the detection of enteric viruses. Influent sample volumes were based on the amount of water that could be processed without clogging the filter. Typically less than 100 liters was filtered for each influent sample, depending on water quality (i.e., content of suspended solids). Larger sample volumes were used for the other sample locations, i.e.,
190-liter samples from the secondary clarifiers and
380-liter samples from the filtration and disinfection processes. Water samples were pumped through Virusorb 1MDS filters (Cuno, Inc.), which were eluted with 1 liter of 1.5% beef extract (BBL V) in 0.05 M glycine (pH 9.5,
25°C) (U.S. EPA/ICR). The eluted sample was concentrated by organic flocculation and assayed for enterovirus by the observation of cytopathic effects (CPE) on recently passed (<4 days) cell lines. Three cell lines, i.e., buffalo green monkey, rhabdosarcoma (ATCC CCL-136), and MA-104 (ATCC CRL-2378.1) cells, were used for this purpose. Positive controls were processed in a separate room, using poliovirus I. CPE on each cell line were observed, and the most dilute sample showing CPE was recorded. MPN determinations were performed using EPA-released software (Most Probable Number Calculator version 4.04; http://www.epa.gov/microbes/other.htm).
Protozoa.
For the detection of Giardia and Cryptosporidium, samples were concentrated by filtration using Gelman Envirochek HV cartridge filters and processed according to the manufacturer's instructions. Following filtration, samples were processed by immunomagnetic separation (Dynal, Inc.) and immunofluorescent antibody detection (Easy Stain; Biotech Frontier, Australia) according to the procedure outlined in U.S. EPA method 1623 (33). Sample volumes varied depending upon the treatment stage and the amount of water that could be filtered, i.e., 0.5 to 1.0 liters influent,
19 liters secondary effluent,
38 liters effluent from filters, and up to 53 liters disinfected effluent. Detection limits varied with the total volume of sample filtered and processed. Each concentrated sample was divided into two aliquots: one for cell culture viability testing and the other for microscopic enumeration. Equivalent volumes were calculated, and the results were reported as cysts or oocysts · 100 liters1.
Cryptosporidium infectivity.
Concentrates from the immunomagnetic separation procedure were inoculated onto HCT-8 cell monolayers in eight-well chamber glass cell culture slides. The cultures were incubated in a 5% CO2 atmosphere at 37°C for 48 h. Infective Cryptosporidium was enumerated by the focus detection method-MPN assay (27). Results were reported as infectious oocysts · 100 liters1.
Statistical analysis.
Statistical analyses were conducted using SAS software version 8.2 (SAS Institute, Cary, NC) or SPSS version 12.0. Data distributions were evaluated with the Shapiro-Wilk test, which was conducted on the raw data, log10-transformed data, and square-root-transformed data. Nonparametric statistical tests were utilized for nonnormally distributed data. Parametric tests were used for analysis of variance, and the Tukey post-hoc test was used to compare treatment means. The Spearman rank correlation was used to test the relationship between indicator organism and pathogen concentrations in the final effluent. A binary logistic regression model (SPSS 12.0) was utilized to determine whether indicator organism concentrations predicted the probability of the occurrence of pathogens in disinfected effluent samples. The dependent variable (pathogen) was treated as a binary variable; that is, a score of 0 was assigned when the organism was not detected, and a score of 1 was assigned when the organism was detected. The independent variables were continuous, and values for samples in which organisms were not detected were reported as 0. True-positive, true-negative, false-positive, and false-negative values were calculated as the number of samples falling into each category divided by the total sample number.
Discriminant analysis was performed on data from effluent samples by using the DISCRIM procedure of SAS (prior probabilities, equal; covariance matrix, pooled). The results of six assays for indicator organisms (total coliform, fecal coliform, C. perfringens, enterococci, and F-specific coliphage assays on two hosts) were converted into a string of binary variables representing the presence or absence of each indicator. The ability of the indicator data string to predict the presence or absence of each pathogen (Giardia, Cryptosporidium, and enteric viruses) was assessed separately. Results are expressed as the percentage of samples correctly classified into the "pathogen present" and "pathogen absent" categories.
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Microbial concentrations through treatment.
Concentrations of indicator organisms and pathogens before (untreated wastewater) and after (disinfected effluent) treatment are shown in Fig. 1 in a box plot format. The limit of detection (see Materials and Methods) was substituted for measured values for samples in which the organism was not detected, which was rare in influent samples but common in effluent samples. Total coliform concentrations were the highest of the microbial measurements in influent samples (>107 CFU · 100 ml1), followed by fecal coliforms and enterococci (
106 CFU · 100 ml1) (Fig. 1). Clostridium perfringens values ranged from 104 to >106 CFU · 100 ml1. Coliphage levels were highly variable, ranging from 103 to 108 PFU · 100 ml1. Pathogen concentrations in the influent (Fig. 1) were 4 to 5 orders of magnitude lower than indicator organism concentrations (note that the unit for pathogen concentrations is 100 liters1). It should be noted that while the enteric virus concentrations represent infectious viruses, Cryptosporidium and Giardia concentrations reflect the total number of cysts or oocysts (infectious and noninfectious) viewed under immunofluorescence microscopy. In the influent samples, about 40% of the detected Cryptosporidium organisms were infective as defined by the focus detection method-MPN cell culture assay. Microbial concentrations in disinfected effluents were much lower, as expected (Fig. 1), and in most cases were near or below the detection limits for each assay.
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FIG. 1. Mean indicator organism and pathogen concentrations in untreated wastewater and disinfected effluent from six wastewater reclamation facilities (n = 30). Log10 concentrations of bacterial indicators (CFU · 100 ml1), coliphages on E. coli 15597 and E. coli 700891 (PFU · 100 ml1), enteric viruses (MPN · 100 liters1), Giardia total counts (cysts · 100 liters1), and Cryptosporidium total and viable counts (oocysts · 100 liters1) are shown. Detection limits were used as concentrations for parameters that were nondetectable. The boxes represent 50% of the data, the vertical lines represent the mean, the lines extending from the boxes represent the 95% confidence limits, and the individual data points represent outliers.
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TABLE 2. Percentage of samples with detectable indicator organisms and pathogens
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Pathogens, measured on the scale of 100 liters1, were detected in 80% (Giardia) to 31% (enteric virus) of samples. Both Giardia and Cryptosporidium were detected by microscopy in 60% of disinfected effluent samples. Unlike the trend noted for the other organisms, the percentage of samples in which Cryptosporidium oocysts were detected remained fairly consistent through the treatment stages (71 to 84%); however, detection limits became progressively more sensitive through the treatment stages, reaching 2.2 to 6.9 oocysts · 100 liters1 in the reclaimed water (disinfected effluents). The percentage of samples containing detectable levels of infectious oocysts decreased from 32% in the untreated wastewater samples to 20% in the reclaimed water samples.
The frequency of detection of the various microorganisms in disinfected effluent samples was compared using Fisher's exact test. Total coliforms and C. perfringens were detected in significantly more samples (63% and 61%, respectively) than enterococci or fecal coliforms (both 27%). Other proportional comparisons between indicator organism detections were not significantly different. The protozoan parasites were detected in significantly more disinfected effluent samples than enteric viruses, but there was no significant difference in the proportion of samples in which Giardia cysts versus Cryptosporidium oocysts were detected. Infective Cryptosporidium was detected in significantly fewer disinfected effluent samples than total Giardia or Cryptosporidium.
Of all the indicator organisms, including the coliphages, the fecal coliforms were found at the lowest concentrations in final effluent samples (Fig. 1) and were among the least frequently detected (Table 2). At hypothetical detection limits of 2 CFU · 100 ml1, total coliforms would be detected in 43% of the disinfected effluent samples, whereas fecal coliforms would be detected in only 10% of the samples (n = 30). Reducing the detection limit to 0.2 CFU · 100 ml1 (the actual detection limit) increased the frequency of detection of fecal coliforms and total coliforms to 27% and 63%, respectively. The relationship between hypothetical detection limit and detection frequency was log linear (r2 = 0.96 for total coliforms and 0.94 for fecal coliforms).
Predictive relationships between microorganisms.
Data from disinfected effluent samples were analyzed separately (by facility) and as a pooled data set (all facilities) to determine if the concentrations of any of the indicators (total coliforms, fecal coliforms, enterococci, C. perfringens, or coliphages) were correlated with each other or with concentrations of pathogens (enteric viruses, Giardia, or Cryptosporidium). Analysis of results by facility did not yield significant correlations (probably due to small sample sizes); however, significant correlations between indicator organism concentrations were observed in the pooled data sets: i.e., for total coliform and fecal coliform (Spearman's rs = 0.5986; P = 0.0005), C. perfringens versus coliphages on host E. coli 15597 (rs = 0.5303; P = 0.0031), C. perfringens versus coliphages on host E. coli 700891 (rs = 0.4981; P = 0.0060), and coliphages on the two E. coli hosts (rs = 0.7915; P < 0.0001). No significant correlation between concentrations of any combination of indicator organism and pathogen was observed.
Enteric viruses were above detection limits in 31% of the disinfected effluent samples (n = 30); however, coliphages and enteric viruses co-occurred in only 13% of the disinfected effluent samples. Concentrations of coliphages on both E. coli hosts were plotted against enterovirus concentrations using only samples in which coliphages and enteric viruses were detected, but the slopes of the relationships were not significantly different from 0 (data not shown).
Binary logistic regression was used to test the hypothesis that indicator organism concentrations were predictive of the presence or absence of pathogens in disinfected effluent. Observations of enteric viruses, Cryptosporidium oocysts, and Giardia cysts were converted to binary data, and the relationship between the concentration of each indicator organism and the presence or absence of each pathogen was assessed, as well as the relationships between the pathogens. Nagelkerke's R-square, which can range from 0.0 to 1.0, denotes the strength of the association; stronger associations have values closer to 1.0. Three indicator-pathogen combinations displayed very weak correlations: coliphage concentration (host, E. coli 15597) and enteric virus presence/absence (R-square = 0.226), fecal coliform concentrations and Giardia presence/absence (R-square = 0.222), and total coliforms and infectious Cryptosporidium presence/absence (R-square = 0.241). In each case, the variability in x accounted for only a fraction of the variability in y (odds that a pathogen would be present). A much tighter association was evidenced, for example, between the two coliphage assays on different hosts (R-square = 0.762), as would be expected for the two similar assays. No correlations between indicators and pathogens were found using the Spearman correlation; however, this is not unusual as binary logistic regression relies on maximum likelihood, does not require linear relationships between variables (19), and utilizes a binary (0, 1) dependent variable.
The analytical consequences of the failure of indicators to correlate with pathogens are shown in Fig. 2. True negatives are samples in which neither indicators nor pathogens were detected, true positives are samples in which both indicators and pathogens were detected, false negatives are samples in which pathogens were detected when indicators were not detected, and false positives are samples in which indicators were detected when pathogens were not detected. These values add up to 100% for each indicator-pathogen combination. Total coliforms frequently survived the disinfection process; therefore, they tended to be present when pathogens were present, resulting in a relatively high true-positive rate compared to the other indicators (Fig. 2A to D). However, total coliforms also tended to have a low true-negative rate (which would ideally be high) and a relatively high false-positive rate, particularly in the cases of enteric viruses and viable Cryptosporidium. In contrast, fecal coliforms, which were relatively infrequently detected in disinfected effluent, tended to have a high true-negative rate but also a low true-positive rate. The percentage of results in the correct categories (true positive and true negative) was not much greater than 50% for any of the indicator-pathogen combinations, although ideally these categories would comprise 100% of observations. Each type of correct and incorrect categorization has distinct implications for public health protection (see Discussion).
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FIG. 2. Relationship between detection of individual indicators and accuracy of pathogen detection in disinfected effluent. All percentages were calculated from the total sample number. Detection limits were 0.2 CFU · 100 ml1 for total and fecal coliforms, enterococci, and Clostridium perfringens and 10 PFU · 100 ml1. for coliphages. (A) Enteric viruses; (B) Giardia cysts; (C) Cryptosporidium oocysts; (D) infectious Cryptosporidium.
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FIG. 3. Discriminant analysis, with results showing the percentage of samples correctly categorized with respect to presence or absence of each pathogen. All of the indicators were used as binary dependent variables. Present, percentage of samples with pathogens actually present and in which pathogen presence was predicted by DA. Absent, percentage of samples in which pathogens were not detected and in which pathogen absence was predicted by DA.
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Detection of microorganisms.
Log10 reduction of microorganisms through wastewater treatment trains is frequently reported (23, 24) but should not be relied upon as the sole measurement of treatment efficacy. Organisms with very high initial concentrations may experience large log reductions while maintaining detectable levels in disinfected effluents, as illustrated by the total coliforms in this study. Total coliforms experienced an average log10 reduction of >7 from influent to final effluent but were still detected in 67% of disinfected effluent samples.
The linear relationship between hypothetical detection limits and the percentage of samples in which total or fecal coliforms would be detected demonstrates the usefulness of larger sample volumes for detecting indicators, but this ability did not generally translate to a significant predictive relationship between indicators and pathogens. However, if normal volumes (100 ml) had been assayed for fecal coliforms and if we assume that no detection would have occurred in samples in which <1 CFU/100 ml was present, the weak correlations between fecal coliforms versus Giardia presence or absence and total coliforms versus infectious Cryptosporidium presence or absence would not have been detected (data not shown).
Bacteriophages have been suggested as an alternative indicator for enteric viruses, as their morphology and survival characteristics resemble those of some of the enteric viruses (13, 29). This study found a weak but significant relationship between the presence or absence of enteroviruses and coliphages on E. coli 15597 by binary logistic regression. A significant relationship was not found between enteroviruses and coliphages on E. coli 700891. This observation, coupled with the improvement in prediction of enterovirus presence or absence by discriminant analysis when coliphage on E. coli 700891 was removed as a variable, suggests that the use of other E. coli hosts for coliphage assays should be further explored.
The use of U.S. EPA method 1623 for detection of Cryptosporidium oocysts does not permit determination of oocyst viability or infectivity, which is crucial information for assessment of the human health risk associated with this parasite. The focus detection method of detecting infectious Cryptosporidium (27) has been utilized in a number of studies (11, 15, 21, 22, 26-28, 34), and results coincide well with those of mouse infectivity assays (15). Approximately one-quarter of the disinfected effluent samples with detected Cryptosporidium oocysts had detectable levels of infectious Cryptosporidium, a disturbing observation in that reclaimed water represents a potential human exposure pathway, depending on how the reclaimed water is used. None of the indicators correlated with Cryptosporidium oocysts or infectious Cryptosporidium.
Because indicators were not predictive of pathogen presence, the results yielded a high percentage of false-negative or false-positive results for all indicator-pathogen combinations. The relationship of indicators with pathogens that were detected more frequently, such as Giardia, tended to show a greater frequency of false negatives (indicators absent but pathogens present). The relationship of indicators with pathogens that were less frequently detected, such as enteric viruses and infectious Cryptosporidium, generally showed a higher frequency of false-positives (indicators present but pathogens absent). False-positive results are undesirable because they represent "false alarms." An indicator that is frequently present in the absence of pathogens, such as total coliforms in this study, is not very informative as to the true risk to human health but is relatively conservative in terms of human health protection. False negatives, on the other hand, suggest that probable human health risks are not being detected, which certainly compromises efforts to protect public health. This study suggests that choosing one indicator to predict the survival and/or occurrence of a wide variety of microbial pathogens forces a choice between the two types of error.
Although individual indicator organisms and pathogens were weakly correlated or uncorrelated, the use of discriminant analysis on the composite data set resulted in the relatively accurate prediction of the presence or absence of enteric viruses, Giardia, Cryptosporidium oocysts, and infectious Cryptosporidium. With the exception of Giardia, errors tended to be false negatives, as the absence of enteric viruses and Cryptosporidium was more accurately predicted than their presence. Further analysis of larger data sets and other indicators, perhaps coupled with measurement of key pathogens, may allow us to refine the predictive capabilities demonstrated by this multivariate analysis. Such a monitoring strategy should protect public health better than the one-indicator system currently used.
Funding was provided by the Water Environment Research Foundation, project 00-PUM-2T.
Florida Agricultural Experiment Station Journal Series no. R10718. ![]()
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