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Applied and Environmental Microbiology, June 2005, p. 3248-3254, Vol. 71, No. 6
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.6.3248-3254.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Influence of Glutamate on Growth, Sporulation, and Spore Properties of Bacillus cereus ATCC 14579 in Defined Medium
Ynte P. de Vries,1,2,3*
Ratna D. Atmadja,2
Luc M. Hornstra,1,3
Willem M. de Vos,1 and
Tjakko Abee1,2
Wageningen Centre for Food Sciences, Wageningen, The Netherlands,1
Laboratory of Food Microbiology, Wageningen UR, Wageningen, The Netherlands,2
Agrotechnology and Food Innovations, Wageningen, The Netherlands3
Received 19 July 2004/
Accepted 27 December 2004

ABSTRACT
A chemically defined medium in combination with an airlift fermentor
system was used to study the growth and sporulation of
Bacillus cereus ATCC 14579. The medium contained six amino acids and
lactate as the main carbon sources. The amino acids were depleted
during exponential growth, while lactate was metabolized mainly
during stationary phase. Two concentrations of glutamate were
used: high (20 mM; YLHG) and low (2.5 mM; YLLG). Under both
conditions, sporulation was complete and synchronous. Sporulation
started and was completed while significant amounts of carbon
and nitrogen sources were still present in the medium, indicating
that starvation was not the trigger for sporulation. Analysis
of amino acids and NH
4+ in the culture supernatant showed that
most of the nitrogen assimilated by the bacteria was taken up
during sporulation. The consumption of glutamate depended on
the initial concentration; in YLLG, all of the glutamate was
used early during exponential growth, while in YLHG, almost
all of the glutamate was used during sporulation. In YLLG, but
not in YLHG, NH
4+ was taken up by the cells during sporulation.
The total amount of nitrogen used by the bacteria in YLLG was
less than that used by the bacteria in YLHG, although a significant
amount of NH
4+ was present in the medium throughout sporulation.
Despite these differences, growth and temporal expression of
key sigma factors involved in sporulation were parallel, indicating
that the genetic time frames of sporulation were similar under
both conditions. Nevertheless, in YLHG, dipicolinic acid production
started later and the spores were released from the mother cells
much later than in YLLG. Notably, spores had a higher heat resistance
when obtained after growth in YLHG than when obtained after
growth in YLLG, and the spores germinated more rapidly and completely
in response to inosine,
L-alanine, and a combination of these
two germinants.

INTRODUCTION
Bacillus cereus is a gram-positive, facultative anaerobic rod-shaped
bacterium able to form spores. It is a ubiquitous bacterium
found in soil and in many raw and processed foods, such as rice,
milk and dairy products, spices, and vegetables (
8,
12,
20,
44). Many strains of
B. cereus are able to produce toxins and
cause distinct types of food poisoning (
19,
31). Concerns over
B. cereus contamination have increased over the past few years
because of the rapidly expanding market of chilled foods that
may be pasteurized but still contain viable spores (
8,
20,
34).
Spores from
B. cereus can germinate and outgrow during storage,
even at low temperatures (
8,
11,
20). To address this increasing
problem, major efforts focus on determining the causes of spore
resistance and the mechanisms of germination.
It has been well established that bacterial spore properties are affected by the conditions during sporulation (1, 17, 18, 33, 41). In most studies, spores are routinely produced from fortified agar or rich liquid media, which results in heterogeneous sporulation conditions for the individual cells. This prevents careful analysis of the metabolism during growth and sporulation. Recent studies describing the effect of sporulation conditions on spore properties involved modulation of sporulation temperature (1, 18, 33, 41, 42) or compared spores produced from different media (9, 32).
Studies employing defined conditions and media to link substrate use with sporogenesis are relatively rare; moreover, the effect of carbon sources on sporulation has not been studied systematically in recent decades. The most common carbon source used in sporulation media is glucose, but in natural conditions, B. cereus may encounter rather different substrates, such as lactate. We have previously shown that B. cereus is able to metabolize lactate (14), which is formed in the natural environment by the fermentation of a variety of naturally occurring polymers, such as lactose in dairy or plant sugars in silage. Indeed, silage is a known source of B. cereus contamination of milk (47). Furthermore, in contrast to glucose, lactate does not cause catabolite repression or repression of the tricarboxylic acid (TCA) cycle, which is required for activation of the Spo0A phosphorelay, which in turn leads to sporulation (25). Therefore, we investigated the growth and sporulation of B. cereus ATCC 14579, which has been characterized at the genome level (26), on a chemically defined medium with lactate instead of glucose as the main carbon source. Secondly, because glutamate has been reported to have a large impact on sporulation as well as spore properties of bacilli (7, 10, 29), we used two different concentrations of glutamate: low (2.5 mM; YLLG) and high (20 mM; YLHG).

MATERIALS AND METHODS
Strains, medium, and fermentation.
B. cereus strain ATCC 14579 was obtained from the American Type
Culture Collection and used throughout this study. It was cultivated
in a chemically defined medium described previously (Table
1)
(
14). Fermentation conditions and inoculation were as described
before (
14). The spores were harvested and washed as described
previously and were stored in 10 mM KPO
4, pH 7, with 0.1% Tween
80 to prevent clumping and attachment of spores to plastic laboratory
equipment. The addition of Tween 80 had no effect on spore heat
resistance.
Analytical procedures.
Concentrations of
D- and
L-lactic acid and glucose in culture
supernatant were determined by the UV method with enzymatic
bioanalysis kits from Boehringer Mannheim (Darmstadt, Germany).
Phase-contrast microscopy was performed with an Axioskop microscope
from Zeiss. Amino acids in culture supernatant, cells, and spores
were determined with the PicoTaq high-performance liquid chromatography
method (
5). The amino acids and NH
4+ from culture supernatant
were derivatized with the AccQ-Fluor kit from Waters (Etten-Leur,
The Netherlands) according to manufacturer's instructions. For
cell and spore analyses, samples were autoclaved and acid hydrolyzed
prior to derivatization.
Dipicolinic acid (DPA) was measured with a fluorescent assay modified from Hindle and Hall (23). Spores or cells were suspended in Tris-NaCl-Tw buffer (Tris-HCl [10 mM, pH 7.5] buffer with 10 mM NaCl and 0.1% Tween 80), destroyed by autoclaving (121°C for 15 min), a treatment known to release all DPA (27), and pelleted at maximum speed in an Eppendorf centrifuge for 2 min. The supernatant was assayed for DPA as follows: 80 µl of supernatant was used in a final volume of 200 µl Tris-NaCl-Tw buffer with freshly added TbCl3 at a final concentration of 100 µM, and the fluorescence was measured with the Safire microplate reader from Tecan (Salzburg, Austria) in combination with XFLUOR4 software, version 4.40. Standard curves of DPA with this method showed straight lines (R2 > 0.99) up to 150 µM of DPA with this Tb3+ concentration, with a detection limit of about 0.5 µM. The settings of the machine were as follows: the excitation wavelength was 272 nm, the emission wavelength was 547 nm, the bandwidth excitation and emission wavelengths were 7.5 nm, the lag time was 10 µs, and the integration time was 2,000 µs.
Spore properties.
For the heat resistance assay, 100 µl spores suspended at an A600 of 0.7 to 1.0 in Tris-NaCl-Tw buffer was sealed in the tip of a Pasteur pipette, placed in an oil bath calibrated to the designated temperature, and cooled after a set time in ice-cold water. Because of the small diameters of the Pasteur pipette tips and the small volume of spore suspension, we assume that the heating and cooling of the spore suspensions were instantaneous. Serial dilutions were made in Tris-NaCl-Tw buffer and plated onto diluted nutrient broth (2.6 g/liter; Difco) solidified with 1.5% agar. Colonies were counted after overnight incubation at 30°C.
The density of the whole spore was measured with a Percoll gradient according to the method described by Tisa et al. (48). Spores were concentrated in 0.15 M NaCl, added to 90% (vol/vol) Percoll (Amersham Pharmacia Biotech) solution with 0.15 M NaCl, and centrifuged for 20 min at 30,000 x g. Whole-spore densities were derived by comparison of the positions of the spores and of density marker beads (Amersham Pharmacia Biotech) in the self-established gradient. The spore core density was determined with Nycodenz (Nygaard, Oslo, Norway) density gradients (43) according to the method described by Lindsay et al. (30) as follows: spores were permeabilized with a decoating solution containing 0.1 M dithiothreitol, 0.1 M NaCl, and 0.5% sodium dodecyl sulfate according to the method described by Vary (51). Permeabilized spores were equilibrated in 30% Nycodenz (1.159 g/ml). Continuous gradients were made by letting discontinuous gradients diffuse overnight at 5°C (43) or for a few hours at room temperature. After centrifugation in a swing-out rotor for 45 min at 3,700 rpm in a Centaur 2 centrifuge, the spores formed a band at a certain position. The refractive index, which was linearly correlated with the density, from samples taken just above and below the band was measured with a precision refractometer, and the average yielded the spore core density.
Spore germination was measured by the drop in A600 of spore suspensions at 30°C by using a Safire microplate reader from Tecan (Salzburg, Austria) in combination with XFLUOR4 software, version 4.40. Spores were suspended at an A600 of 0.7 to 1.0 in Tris-NaCl-Tw buffer, and after the addition of the germinants, the A600 was followed automatically with intermittent shaking to prevent settling of the spores.
RT-PCR.
Real-time reverse transcription (RT)-PCR was used to monitor the expression of the genes for key sigma factors (sigA, sigB, sigF, and sigG) and performed as described earlier (14). The level of expression was calibrated by using the positive control, sigA expression, as a reference. All the samples in this communication were handled in exactly the same way to enable a good comparison of the gene expressions in the two conditions we tested. Real-time RT-PCRs were carried out in duplicate, and the duplicates differed less than 5% in all cases.

RESULTS AND DISCUSSION
Carbon and nitrogen use during growth and sporulation.
B. cereus was able to grow and sporulate in the chemically defined
medium devoid of glucose. With lactate as the main carbon source,
the exponential growth phases of
B. cereus with low and high
glutamate, YLLG and YLHG, respectively, were identical (Fig.
1A). The
A600 curves and pH curves ran exactly parallel up to
the point where the glutamate in YLLG is used up (Fig.
1B),
while during growth in YLHG, glutamate was barely consumed at
this time. From the moment of glutamate depletion in YLLG, the
absorbance and pH differed between cultures grown in YLLG or
YLHG, although lactic acid was metabolized in a parallel manner
for both media (Fig.
1B). During the growth of culture in YLHG,
the extra rise in pH coincided with glutamate consumption, indicating
that it was a result of glutamate metabolism.
The higher
A600 that was reached during the growth of culture
in YLHG suggests that many more cells are present in this culture
than in the culture grown in YLLG. However, neither plate counts
nor direct microscopic observations confirmed that this was
the case, although plate counts were difficult because the cells
formed large clusters at the end of exponential growth, as we
observed before (
14). It is possible that the
A600 is influenced
by the pH, because we noticed that in the medium that we used
a high pH (above 8.5) results in some precipitation, presumably
of phosphate with calcium or magnesium. Furthermore, a dark
brown color developed in the supernatant during sporulation
in YLHG but not in YLLG, further raising the
A600. This makes
it plausible that although the final
A600 reached with the culture
grown in YLHG was higher, the actual cell density was quite
similar to that of the culture grown in YLLG. Indeed, the total
biomasses, as measured by nitrogen contents, were similar for
the two cultures at the end of sporulation, both cultures produced
similar amounts of DPA, sporulation frequency was >99% in
both cases, and the cleaned spores had similar DPA contents
(Table
2). This confirmed that, indeed, equal amounts of cells
were present in the cultures in YLLG and YLHG.
We initially expected the maximum growth rate of
B. cereus in
the medium with lactate to be lower than that of
B. cereus in
the same medium with the much more favorable substrate, glucose,
but the rates were identical (about 0.45 h
1). However,
the lag phase was much longer without glucose. This indicates
that the exponential growth rate is primarily determined by
the amino acids in the medium. Indeed, during exponential growth,
the bacteria metabolized the amino acids present in the medium,
while lactate was used upon entry into stationary phase (Fig.
1 and
2). The metabolism of a 10 mM concentration of amino acids
during exponential growth was accompanied by a 10-mmol rise
in NH
4+ in the supernatant of both cultures, indicating that
B. cereus used the amino acids as a carbon source and fuel,
while most of the lactic acid was metabolized after the cells
had entered stationary phase. These findings confirm the anticipated
preference of
B. cereus for amino acids, as derived from genome
analysis studies (
26). In the presence of either glucose or
lactate, the amino acids were depleted in the same order: threonine
was first, then valine, histidine, and leucine, and methionine
was the last (data not shown). The moment of glutamate consumption
depended on the initial concentration;
B. cereus metabolized
glutamate earlier in YLLG than in YLHG, and during cultivation
in YLLG, glutamate was depleted early, after threonine. In YLHG,
the concentration of glutamate started to decrease 3 h later,
and glutamate was the last amino acid to be metabolized.
Because the metabolism of amino acids during exponential growth
resulted in a nearly equimolar increase of NH
4+ in the supernatant,
the total amount of nitrogen assimilated by
B. cereus was very
low during this growth phase. Indeed, our measurements clearly
indicated that most of the nitrogen assimilated by
B. cereus is taken up during sporulation (Fig.
2), underscoring the high
nitrogen requirement of sporulating cells. The total concentrations
of nitrogen initially present were 40 mM in YLHG and 22.5 mM
in YLLG, a significant part of which (10 mM) consisted of NH
4+,
which was routinely added to the media as (NH
4)
2SO
4 (Table
1).
When cultivated in YLHG,
B. cereus used the bulk of the glutamate
in the stationary and sporulation phase, after the other amino
acids had disappeared. During this phase, the NH
4+ concentration
in the supernatant remained 20 mM, indicating that the nitrogen
in the glutamate was completely assimilated. When cultivated
in YLLG however,
B. cereus assimilated NH
4+ during the stationary
and sporulation phase.
At the end of sporulation, a total of 20 mM of nitrogen had disappeared from the culture supernatant in YLHG, of which we could trace back 16 mM as cell-bound nitrogen (Table 2). The remaining 4 mM might be present in the brown pigment that was formed in the culture supernatant during sporulation, as a brown pigment produced by B. subtilis during sporulation was shown to contain a significant proportion of nitrogen (3). The culture grown in YLLG had assimilated 15 mM of nitrogen in total at the end of sporulation, all of which we could trace back as cell-bound nitrogen (Table 2).
In both media tested, 99% of the cells produced a phase-bright spore and the concentrations of DPA reached about 115 µM, after which the oxygen consumption of the cultures decreased dramatically (data not shown). DPA production and phase brightening of the forespores are indicative of the final phases of sporulation (16). Notably, DPA production and the release of the spores from the mother cells started much earlier after cultivation in YLLG than in YLHG. It is generally assumed that sporulation is a response to starvation (45). In our experiments, however, significant amounts of carbon (D-lactate and glutamate) and nitrogen (NH4+ and glutamate) were present when the cells started to sporulate. Even after sporulation was completed, a significant amount of these C and N sources remained. Nutrient limitation therefore seems an unlikely trigger for sporulation under the conditions we employed. From B. subtilis, it is known that in addition to starvation, quorum sensing can be involved in the initiation of sporulation (46). In silico analysis of the B. cereus ATCC 14579 genome with the ERGO genome and discovery system (36) revealed the presence of the gram-positive quorum-sensing and competence II pathway which is also present in B. subtilis. Thus, although additional experiments in which cell density is carefully manipulated are needed to provide definite evidence, it is tempting to speculate that in our experiments, cell density rather than nutrient limitation may have been the factor that triggered the cells to sporulate. Because extra glutamate did not result in extra biomass, the cell densities in YLHG and YLLG were similar at all times. Indeed, sporulation as judged by the rise in sigF and sigG transcription started at the same moment under both conditions (Fig. 3) (see below).
Gene expression.
The differences we found in the nitrogen metabolism and timing
of DPA formation prompted us to check for differences in the
genetic programs of sporulation in YLLG and YLHG. Therefore,
we measured the expression of genes for four key sigma factors
involved in stress response, growth, and sporulation:
sigB,
sigA, and
sigF and
sigG, respectively (Fig.
3). The product
of
sigA, sigma factor
A, is the primary sigma factor. It regulates
macromolecular synthesis, plays a key role in the housekeeping
functions of the cell (
22), and is expressed by
B. cereus at
a high level throughout growth and sporulation (
14); therefore,
we used
sigA expression as a reference and a positive control.
During cultivation in YLLG and YLHG,
sigB transcription levels
were high compared to the levels of transcription during growth
with glucose (
14) and showed no clear peak upon entry into the
stationary phase (Fig.
3A). It was reported that
sigB transcription
is increased upon entry in stationary phase (
14,
22) and when
the cell encounters stress (
50), directly affecting cell and
carbon metabolisms (
40). Our present findings indicate that
B. cereus experiences more stress when grown in a medium with
lactate instead of glucose and that the
sigB peak observed before
(
14) was caused by a shift from glucose metabolism to other
carbon sources rather than by changes in growth rate upon entry
into the stationary phase.
During the cultivations in YLLG and YLHG, the expression patterns of sigF and sigG (Fig. 3B) were comparable to those on glucose (14) in that we observed a high peak of sigF transcription, followed by a sigG peak. However, with lactate as a carbon source, sigF expression showed a sharp peak, while during sporulation with glucose, we observed a broad peak (14). The product of sigF, sporulation sigma factor
F, is produced in the predivisional cell (37) well before the first irreversible step of sporulation (15). After septation, when the cells have become committed to sporulate,
F is released from its anti-sigma factor to become active in the forespore only (37). The gene encoding
G, sigG, is under the control of
F and expressed in the forespore compartment just after the appearance of the sporulation septum (15). Thus, an increase of sigG transcription indicates
F activity.
G plays a role in the final stages of sporulation, regulating the synthesis of SASP and Ger proteins (2, 22, 24). Interestingly, the times at which the maximum sigF and sigG expressions occurred were almost the same under both conditions, with only a slight delay of 30 min for the YLHG cultivation. This suggested that there was no considerable difference in the programming of sporulation, judging by the temporal expression of the key sigma factors we measured. Nevertheless, B. cereus started to produce DPA and phase-bright spores in YLLG more than 3 h earlier than in YLHG, indicating that the length of the sporulation process was increased by glutamate. In contrast, Kennedy et al. (29) reported that lower glutamate concentrations led to a longer sporulation time. These authors used different media and a different strain, however, which may explain this difference. DPA synthesis is regulated by
K (16), a sporulation-specific sigma factor expressed by the mother cell compartment in response to
G activity in the forespore during the final stages of sporulation (37). It is possible that although sigG expressions are parallel in YLLG and YLHG, the actual
G activity in YLHG is delayed, or that
G activity is also parallel but
K activity in the mother cell is delayed. Either way, our findings suggest that there is a certain degree of plasticity in the tightly regulated sporulation program.
Spore properties.
Important spore properties are germinability and heat resistance. Therefore, we determined the resistance of the spores from YLHG and YLLG to 95°C, and their germination response to two well-known germinants for B. cereus: L-alanine and inosine. Spores from YLHG were more resistant to 95°C than those from YLLG (Table 2). Because heat resistance has been associated with the core water content (4, 38), we measured the core density, which is linearly correlated with the water content (38). The whole-spore density and the DPA content of spores from YLLG were rather similar to those of spores from YLHG, but the core density was somewhat higher (Table 2). This was in contrast to our expectations, because core density is generally believed to be positively correlated with heat resistance. Indeed, as was stated by Atrih and Foster (1), complex cooperative phenomena are involved in the assembly of spores, and a multicomponent system is the basis for spore heat resistance.
We measured the germinability of the spores without a prior heat activation step, in order to prevent any possible interference by compounds released from the spores themselves (39). Furthermore, spores from YLLG tended to germinate spontaneously after a heat shock for 15 min at 75°C, which reflects their heat sensitivity. Clear differences in germination speed and extent between spores from YLHG and YLLG were observed, as can be seen in Fig. 4. The response to L-alanine in spores from YLLG was severely limited, while these spores responded faster to inosine but much slower still than spores from YLHG. The most powerful germinant known for B. cereus is a combination of L-alanine and inosine (13). Although the difference was less pronounced, even with a combination of L-alanine and inosine, spores from YLHG germinated quicker and more completely than spores from YLLG. Thus, with every germinant tested, spores from YLHG germinated faster and to a greater extent than spores from YLLG. It is known that spores from different media may have different responses to L-alanine because of differences in the alanine racemase content (A. Moir, personal communication), an enzyme that is present in the exosporium of B. cereus (49) and converts the germinant L-alanine into the germination inhibitor D-alanine. Spores produced from YLLG may have higher alanine racemase contents than those from YLHG. In addition to containing alanine racemase, the exosporium of B. cereus contains nucleoside hydrolase, an enzyme that could inhibit inosine-induced germination (49). The presence of higher levels of nucleoside hydrolase in spores from YLLG could therefore explain the differences in inosine-induced germination that we observed. We tried germination in the presence of D-cycloserine, a known alanine racemase inhibitor (6), but this resulted in an overall lower response in all cases. Experiments with other alanine racemase inhibitors (e.g., O-carbamyl-D-serine; 28) and nucleoside hydrolase inhibitors could bring more clarity to those issues.
Clearly, the glutamate concentration affected the sporulation
process and spore properties. Indeed, glutamate has been reported
to have a large impact on sporulation as well as spore properties
of bacilli. In
Bacillus thuringiensis, a close relative of
B. cereus (
21), glutamate appears to regulate TCA cycle activity
as well as influence spore heat resistance and DPA content (
35).
B. cereus has been reported to metabolize glutamate primarily
as an energy source during the time of sporogenesis (
10). Several
studies have attempted to determine the fate of the carbon skeleton
of glutamate, and it was concluded that glutamate used during
sporulation is respired almost completely to CO
2, largely via
the TCA cycle (
10,
35). Our results confirm that glutamate is
used largely during sporulation when present in a high concentration,
but an interesting outcome is that glutamate metabolism during
sporulation does not result in an increase of NH
4+ in the medium.
This implies that the glutamate served as an nitrogen donor
during the sporulation process, not only as a source of energy
and reducing power, as was stated by Charba and Nakata (
10).
Indeed, in YLLG, NH
4+ was taken up by the cells during sporulation,
but
D-lactate, which can serve as a source of reducing potential
and energy, partly remained in the supernatant.
In conclusion, we have found that B. cereus is able to form spores on a chemically defined medium without glucose but with lactate as a main carbon source. Sporulation was not induced by nutrient limitation. Glutamate delayed the final stages of sporulation but not the initiation. Clearly, the glutamate concentration influences such key spore properties as heat resistance and germination. Our defined approach to sporulation and spore properties is highly suitable for gene expression analysis employing DNA microarrays, which we are developing at this moment. Future experiments coupling defined sporulation conditions with full transcriptome analysis and spore properties will allow us to carefully dissect the molecular basis of such important spore properties as heat resistance and germination.

FOOTNOTES
* Corresponding author. Mailing address: Bornsesteeg 59, P.O. Box 17, 6700 AA Wageningen, The Netherlands. Phone: 31-317-475109. Fax: 31-317-475347. E-mail:
Ynte.deVries{at}wur.nl.


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Applied and Environmental Microbiology, June 2005, p. 3248-3254, Vol. 71, No. 6
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