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Applied and Environmental Microbiology, August 2005, p. 4364-4371, Vol. 71, No. 8
0099-2240/05/$08.00+0 doi:10.1128/AEM.71.8.4364-4371.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Finnish Institute of Marine Research, Helsinki,1 University of Helsinki, Department of Applied Chemistry and Microbiology, Division of Microbiology, Helsinki, Finland2
Received 6 October 2004/ Accepted 8 March 2005
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-proteobacteria or the Cytophaga-Flavobacterium-Bacteroides group. The overall physiological and community structure responses were parallel in ice-derived and open-water bacterial assemblages, which points to a linkage between community structure and physiology. These results support previous assumptions of the role of salinity fluctuation as a major selective factor shaping the sea ice bacterial community structure. |
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Upon ice formation, bacteria incorporated into the newly forming ice must cope with severe physicochemical stress caused by salinity extremes and ice nucleation (41). Immediately after ice formation, a strong reduction in bacterial metabolic activity occurs as the water column bacteria decline. Subsequently, metabolic activity is restored as the psychrophilic population becomes established (5, 20, 21, 29). A gradual transition occurs in bacterial community composition from dominant psychrotolerant to obligate psychrophilic bacteria as sea ice formation progresses from the initial stages to a consolidated ice sheet (11, 23, 41). Low temperature alone or the ability to utilize available substrates at low temperatures does not account for the selective enrichment of psychrophiles (38, 43, 44). Sea ice bacterial assemblages have to be able to cope with constant and irregular salinity fluctuations, as brine salinity and chemical composition change over short time scales along with ice temperature changes (14, 19). Therefore, frequency, magnitude, and rate of salinity variation are believed to be major selective factors shaping the ice bacterial community (27, 41). Also, in open-water ecosystems, salinity fluctuations have been shown to significantly alter bacterioplankton community composition (1, 41).
In addition to the polar oceans, annual sea ice formation occurs in adjacent temperate sea areas as in the Baltic Sea. The northern Baltic Sea is annually ice covered for up to 6 months (45). Despite the brackish parent water, the sea ice contains a fully developed brine channel system and hosts diverse and active organism assemblages comparable to those of polar sea ice (29). Measured brine salinity in the Baltic Sea ice varies between 6 and 30 practical salinity units (psu) (26, 28, 32, 37). Even though brine salinity in polar sea ice may be substantially higher during winter, it is likely to be lower in spring and summer because of the flushing effect of ice melt and saline depletion resulting from the period of high-salinity brine drainage over winter (14, 23, 36). The spring-summer period is accompanied by maximal heterotrophic activity in sea ice (8, 22, 31), and polar sea ice bacteria may have preferential adaptation to the lower end of the salinity range, i.e., below the salinity of oceanic water (40). Nichols et al. (40) suggested that information on the physiological response of psychrophilic bacteria to combined temperature-salinity stress is very crucial to an understanding of the entire bacterial sea ice community. However, studies on the effects of salinity variations on sea ice natural bacterial assemblages have been lacking up to now. The aim of this study was to describe the effects of increasing salinity on the physiology and structure of the Baltic Sea ice and open-water natural bacterial assemblages. An experimental approach, designed to cover the salinity range from the ambient Baltic seawater in the study area to the Baltic Sea ice brine environment, was applied.
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For each of the two successive experiments, two separate eight-unit series were prepared, one containing only the open-water bacterial community (hereafter referred to as the "W" [water] series) and the other containing the open-water community and an addition of ice bacteria (hereafter referred to as the "I" [ice] series). Polycarbonate bottles of 1,200 ml (NalgeNunc International, Rochester, NY) were filled with 660 ml of seawater sample that was filtered through a 20-µm net to remove larger predators of bacteria and 540 ml of the same sample water filtered through a 0.45- plus 0.2-µm Sartobran 300-capsule filter (Sartorius, Göttingen, Germany) to remove bacteria. The W series contained only the open-water bacterial community already present in 20-µm-filtered inoculum. The I series was amended with sea ice bacteria that had been concentrated by centrifugation from the melted ice sample prefiltered through a 1-µm polycarbonate membrane filter (Millipore, Billerica, MA). That procedure resulted in the abundance of the ice bacteria which was 10% of that of the open-water bacteria already present in the experimental units (bacterial abundance was determined as described below). Salinity of the two experimental series was adjusted with Tropic Marin synthetic sea salt (Dr. Biener GMHB, Wartenberg, Germany), resulting in four salinity levels (5, 12, 19, and 26 psu), each in duplicate units in both series. To ensure sufficient bacterial growth, all units were amended with 1 mg liter1 sucrose C and 40 µg liter1 PO43 P. All units were incubated at 0°C in the dark for 17 or 18 days, and sampling was performed at 1- to 4-day intervals. Evolution of the total bacterial number, bacterial average cell volume, and total incorporation of thymidine and leucine were followed over the course of the experiment. The leucine and thymidine incorporation were measured from both duplicate units. Since the standard deviations between duplicate units of the leucine and thymidine incorporation were generally very small (see Fig. 2), the bacterial abundance and average cell volume measurements as well as community DNA collection were done from only one of the duplicate units.
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FIG. 2. Total leucine incorporation (TLI) and total thymidine incorporation (TTI) in the open-water (W) and ice (I) series of experiments 1 and 2; error bars denote standard deviations between the duplicate units. d, day.
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Specific growth rates (µ) of bacteria were calculated according to the following formula (equation 1):
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The bacterial relative DNA and protein synthesis activities were measured using [3H]thymidine to determine the total thymidine incorporation (15, 16) and [14C]leucine for the total leucine incorporation (30) (dual labeling) as a proxy. Three 10-ml aliquots and a formaldehyde-killed (0.5% final concentration) absorption blank were amended with L-[U-14C]leucine (specific activity, 315 mCi mmol1; Amersham Biosciences, Buckinghamshire, United Kingdom) and [methyl-3H]thymidine (specific activity, 20 Ci mmol1; NEN, Boston, MA). The concentrations used, 14 nM for thymidine and 166 nM for leucine, were tested to be above the saturating concentration. The samples were incubated at 0°C for 2 h, and incorporation was terminated with formaldehyde. The macromolecules were collected using the standard cold-trichloroacetic acid extraction technique, and samples were counted with a Wallac WinSpectral 1414 liquid scintillation counter (Perkin-Elmer, Wellesley, MA [formerly Wallac, Turku, Finland]).
Community structure responses.
For bacterial community structure analysis, community DNA was isolated at the start of the experiment from the original melted ice samples, and the sample water was used for the W and I units. The bacterial cells were collected from all 16 units on day 10 for experiment 1 and on day 13 for experiment 2 by filtering the maximum possible amount of sample water (80 to 500 ml) onto a 47-mm-diameter Supor 200 polyethersulfone filter (Pall Corp., East Hills, NY). The filters were stored in a lysis buffer consisting of 40 mM EDTA, 400 mM NaCl, 750 mM sucrose, and 50 mM Tris HCl (pH 8.3) (18) at 80°C. In the laboratory, DNA was extracted following the hot-phenol method as described previously (18), except for precipitation of DNA, which was performed by adding a 1/10 volume of 3 M sodium acetate and 2 volumes of 94.6% ethyl alcohol and letting the sample precipitate at 20°C for 2 to 24 h. After centrifugation (16,000 x g, 20 min) the pellet was rinsed with 70% ethyl alcohol and centrifuged (16,000 x g, 10 min), resuspended in 60 µl of Tris-EDTA buffer, and stored at 20°C. The DNA extracts obtained were subsequently purified using a Prep-A-Gene DNA purification kit according to the manufacturer's instructions (Bio-Rad Laboratories, Hercules, CA).
Partial 16S rRNA genes were amplified from the community DNA with the general eubacterial primers F984GC and R1378 (24). The 25-µl PCRs contained 3 µl of the DNA extract as template, 0.3 µM of each primer, 200 µM of each deoxynucleoside triphosphate (Finnzymes, Espoo, Finland), 0.3 U DyNAzyme II polymerase (Finnzymes), 1x DyNAzyme II polymerase buffer, 700 µM MgCl2, and 1.0 M betaine. The PCR cycling consisted of a 3-min denaturation step at 94°C, followed by 35 cycles at 94°C for 1 min, 53°C for 1 min, and 72°C for 1 min, with a final extension step of 10 min at 72°C. The PCR products were checked in 1.5% (wt/vol) agarose gels in 0.5x TAE buffer (20 mM Tris-acetate, 0.5 mM EDTA [pH 8.9]).
Denaturing gradient gel electrophoresis (DGGE) was used to study the composition of and changes in the bacterial communities between the start and end (day 10 or 13) of the experiments. The PCR products were loaded onto 6% acrylamide-bis-acrylamide (37.5:1) DGGE gels with a vertical denaturing gradient from 38% to 45% (100% denaturant consisting of 7 M urea and 40% formamide). The running conditions were 150 V at 60°C in 1x TAE buffer for 4.5 h. The gels were stained with GelStar nucleic acid stain (Rockland, ME) for 40 min and photographed under UV light. Some of the most prominent bands with interesting positions in the gels were then excised for sequencing. The excised bands were stored in 50 µl of Tris-EDTA buffer at 20°C.
For sequencing, the partial 16S rRNA genes from the DGGE bands were amplified as described above, using 5 µl of the DGGE band sample as a template. To enhance liberation of the template from the gel, the melted sample was kept in a lab bench shaker for 30 min at room temperature. The PCR products were purified for sequencing with Ultrafree-DA columns (Millipore, Billerica, MA). The sequencing was carried out with an ABI Prism 310 Genetic Analyzer (PE Applied Biosystems, Foster City, CA) with the ABI Prism BigDye Terminator Cycle Sequencing Ready Reaction kit according to the manufacturer's recommendations (PE Applied Biosystems). The above-mentioned primers were used for sequencing reactions, and the amplicons were resolved in both directions. The sequences from each band were checked by aligning them with the PILEUP program of GCG package version 10.1 (Accelcrys, San Diego, CA [formerly Genetics Computer Group, WI]) and manually edited using the GeneDoc multiple sequence alignment editor.
In order to enhance detection of bands in the DGGE gels, all lanes of the gel images were scanned with public domain imageJ software (available at http://rsb.info.nih.gov/ij/), and the bands were detected from intensity histograms. To reveal similarities between different communities, band presence/absence data were subsequently used for cluster analysis (hierachical clustering, Ward linkage, and percent distance) using Systat 7.0 software (SPSS; Munich, Germany).
Nucleotide sequence accession numbers.
The sequences described above were deposited in GenBank under accession numbers AY271857 to AY271864.
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FIG. 1. Total bacterial number (TBN) and average bacterial cell volume (BVOL) in the open-water (W) and ice (I) series of experiments 1 and 2. d, day.
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Similar to leucine incorporation, thymidine incorporation was significantly higher in the two lower-salinity units than in the two higher-salinity units (P < 0.016 [separate Mann-Whitney U tests for days 7 to 13]).
Community structure.
In the DGGE band pattern intensity histograms of experiments 1 and 2, 23 and 32 bands were detected in the initial water samples and 30 and 24 bands were detected in the ice samples, respectively (Fig. 3 [experiment 1 DGGE band pattern is shown]). The water and ice communities were initially rather similar; however, certain bands, including a multiple band marked "unidentified" (Fig. 3), were present in the ice community only. During the course of the experiment, the community structures changed (Fig. 3). Bands present in the starting communities, such as BSW1 and BSW2, either were not found in the communities on day 10 or were less intense. Alternatively, bands such as BSW14 were more intense on day 10 than at the start. Differences in the band patterns between the W and I communities on day 10 were also detected. The band BSW43 showed higher intensity in the W community, whereas the bands BSW35 and BSW45 and the unidentified band showed higher intensities in the I series (Fig. 3). The most explicit differences in band intensities in both experiments along the salinity gradient were observed in band BSW18, which showed the highest intensities in the highest salinities (19 and 26 psu).
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FIG. 3. DGGE band pattern of PCR-amplified partial 16S rRNA genes of eubacteria from the initial (Start), open-water (W), and ice (I) series communities of experiment 1 with the melted ice sample (Ice) and those from the W and I communities on day 10 of the experiment 1 (Day 10) grown with salinities of 5, 12, 19, and 26 psu. The lanes with standards are marked with St and the sequenced bands are indicated with lines and codes on the gel below, with the exception of the not-sequenced multiple band marked as "unident."
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FIG. 4. Cluster analysis dendrograms of the open-water (W) and ice (I) series initial (Start) and end communities based on band presence/absence data in DGGE gel images of experiments 1 and 2.
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View this table: [in a new window] |
TABLE 1. Partial 16S rRNA gene sequences derived from Baltic Sea water and ice communities and their closest matches in GenBank
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The close association between our phylotypes from the Baltic Sea and from both polar areas corresponds with the recent findings of Brinkmeyer et al. (6) on phylogenetic convergence between Arctic and Antarctic sea ice bacterial communities. As found in previous studies of polar sea ice (3, 6, 7, 27), the majority of sequenced clones belonged to the
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-proteobacteria and the Cytophaga-Flavobacterium-Bacteroides group. BSW35 was the only exception, showing 99% sequence similarity with environmental clones of ß-proteobacteria from glaciers from the Southern Hemisphere and 98% sequence similarity with an environmental clone from Arctic sea ice (6).
Ice-derived bacterial communities.
In contrast to the water column bacterial communities, the major part of the sea ice bacterial community is believed to be metabolically active and cultivable (6). Sea ice bacteria added to the I units were metabolically active, which was shown by the higher initial leucine and thymidine incorporation rates observed in the I series than those observed in the W series. It was further assumed that this active 10% subpopulation of sea ice bacteria was able to overgrow the more slowly growing open-water-derived bacterial assemblage in the I units as described previously (13), leading to formation of an ice-derived bacterial assemblage in the I series. This assumption is supported by the earlier onset of increase of bacterial cell abundance and leucine and thymidine incorporation observed in the I series compared with that of the W series (Fig. 1 and 2).
Ice-derived bacterial communities were able to adapt to salinity change without major changes in growth rates or maximal bacterial cell numbers, which is consistent with the results from experimental work with a single sea ice bacterial species (38, 40). The significantly lower leucine and thymidine incorporation rates in the two units with higher salinity, however, suggest that the sea ice-derived assemblage could grow more efficiently in the upper end of the salinity range used. The physiological differences between low- and high-salinity units in the I series may have resulted from changes in community structure (Fig. 3). In I series, two separate groups corresponding to the significant differences observed in the leucine and thymidine incorporation were found in the cluster analysis. The most notable response of an organism to the salinity change was observed in band BSW18 associated with Colwellia spp. (Table 1). The intensity of the band increased along with increasing salinity in both W and I series (Fig. 3). The low intensity of BSW18 at low salinity may be due to the sea salt requirement of Colwellia spp., with a reported lower salinity limit of 25% of oceanic water (9 psu) for growth (2). The occurrence of band BSW18 in the initial open-water community at the depth of 10 m and ambient salinity of 5.3 psu remains unexplained.
Open-water bacterial communities.
In all the W series units, average bacterial cell volume increased sharply prior to bacterial abundance, with the increase being pronounced in the two units with the highest salinity (Fig. 1). This bacterial cell volume increase and lower maximal cell numbers in the unit with the highest salinity may be related to salinity stress. The overall physiological responses of the open-water assemblages (W series) were markedly different from those of the I series. This may be a reflection of different salinity adaptation strategies in these two adjacent wintertime bacterial communities. Current knowledge on the phylogenetic succession of bacterial assemblages in aquatic ecosystems and the transition mechanisms between phylogenetically distinct assemblages is limited. However, severe physiological stress to the bacteria is assumed to be accompanied by phylogenetic succession (10, 39). In comparison to the I series, the W series end communities showed a more variable clustering pattern along with the salinity increase (Fig. 4), which is parallel to the physiological responses observed and may have resulted from salinity stress encountered by the open-water bacterial assemblage. All end communities clustered apart from the initial communities, which probably reflected the effects of the experimental conditions. Clearly, conditions in batch cultures differ from those in the natural environment and are thus to some degree selective; however, all end communities were subsets of the initial communities and thus represent major components of the initial communities, as only the prominent species present in a bacterial community are assumed to be visible in PCR-DGGE. The advantage of this type of batch experiment is that it allows testing of specific factors, in this case, salinity, while other conditions are kept constant (33).
Conclusions.
In this study, we present the first results on physiological and community structure responses of sea ice bacterial communities to salinity change. The results show that under experimental conditions, the sea ice-derived natural bacterial communities were able to maintain balanced growth over the salinity range used with small changes in community structure and physiology especially within the two groups observed, which points to effective adaptation to salinity fluctuations. The open-water bacterial assemblages seemed to suffer from osmotic stress along with the salinity rise and responded to increased salinity with greater changes in community structure and physiology. The parallel physiological and community structure responses in both the ice and open-water bacterial assemblages point to a clear linkage between the phylogenetic structure and physiological responses of these bacterial communities, as suggested previously by Del Giorgio and Bouvier (10) for estuarine bacterioplankton. Adaptation to salinity fluctuations is crucial for sea ice organisms living in a constantly changing salinity environment, while open-water assemblages tend to respond with changes in community structure. Results of this study well support the earlier assumptions on the role of salinity fluctuation as a major selective factor shaping the sea ice bacterial community structure.
The assistance of Tvärminne Zoological Station staff in logistics and sampling is gratefully acknowledged.
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3). Int. J. Syst. Bacteriol. 48:1171-1180.
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