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Applied and Environmental Microbiology, October 2006, p. 6716-6724, Vol. 72, No. 10
0099-2240/06/$08.00+0 doi:10.1128/AEM.01275-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Genetics, University of Debrecen, P.O. Box 56, H-4010 Debrecen, Hungary, and Research Group of Microbial Developmental Genetics, Hungarian Academy of Sciences, P.O. Box 56, H-4010 Debrecen, Hungary
Received 3 June 2006/ Accepted 7 August 2006
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Fruit-borne strains of Metschnikowia pulcherrima can be effective in protecting apples, peaches, and grapes against postharvest rot caused by Botrytis cinerea and other postharvest pathogens (14, 36, 48). The related species Metschnikowia fructicola is an effective biocontrol agent for postharvest diseases of grapes (25). M. pulcherrima, but not M. fructicola, produces a red pigment, pulcherrimin, that accumulates in the cells and in the medium near a colony (26, 27). Pulcherrimin is a large complex formed nonenzymatically from a dibasic acid, pulcherriminic acid, and ferric ions (11, 29). The mechanism of the antifungal antagonism and its relationship to the production of pigment have not been studied yet.
M. pulcherrima is common on wine grapes at the time of harvest (for a review, see reference 20) and in grape must during the early stages of wine fermentation (9, 10, 19, 31). M. pulcherrima occurs more frequently on damaged berries (37), on berries used to produce ice wine (7), and in botrytized (noble-rotted) wines (1). Ice wine is a late-harvest wine produced from grapes left on the vine until the first frost hits. These grapes are overripe and frequently rupture and partially desiccate before harvest. Noble rot of grapes occurs when the berries are infected by B. cinerea. Water evaporates through the Botrytis-generated skin lesions, and the grapes desiccate, resulting in high levels of sugar. The ability of M. pulcherrima to survive under these low-water-availability conditions (41) may be a reason for its prevalence on noble-rotted and ice wine grapes.
The objectives of this study were (i) to isolate pigment-producing strains of Metschnikowia from noble-rotted grapes, (ii) to test these isolates to determine their ability to antagonize the growth of filamentous fungi, yeasts, and bacteria, (iii) to determine the role of pigment production in the antagonism observed, and (iv) to identify the cytological target(s) of the inhibitory agent. Since pulcherrimin is a nondiffusible complex (11, 26, 29), I propose that Metschnikowia inhibits the growth of other microbes by immobilizing iron in the medium. This possibility has not been considered in previous reports on the antifungal antagonism of Metschnikowia strains. The proposed mechanism of iron depletion is different from the mechanisms operating in microbes that release siderophores (low-molecular-weight, ferric ion-specific chelators) into the environment for the purpose of absorbing iron (for a review, see reference 24). As iron is essential for the growth of many microorganisms and microbial pathogenesis, iron sequestration by nonpathogenic microbes can be exploited in novel and more environmentally benign systems for postharvest protection against destructive fungi.
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TABLE 1. List of strainsa
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Tests for pigment production.
To compare pigment production in colonies growing on agar plates, cells of the isolates either were streaked on agar plates or were suspended in sterile water (
107 cells per ml), and 15-µl samples of the suspensions were dropped onto the surfaces of agar plates. The widths of the reddish halos around the yeast colonies were measured after 5 to 10 days of incubation at 25°C. Pigment production also was tested in shake cultures at 25°C (50 ml medium in a 200-ml Erlenmeyer flask; incubation at 100 rpm in a gyratory shaking incubator for 14 h; inoculum, 104 cells/ml).
Tests for antagonism.
Inhibition of conidial germination was examined on PDA plates flooded with suspensions of conidia. One yeast isolate was streaked or dropped on each plate and incubated at 25°C. To examine the inhibition of hyphal growth, spores were streaked on PDA plates and incubated for 2 days at 25°C to allow them to develop mycelia. The yeast isolates tested were inoculated as colonies from 15-µl spots placed 5 mm ahead of the growing edges of the mycelia. The plates were checked for inhibition twice a day for 7 days because the growth rates of the fungal strains differed.
The effects of Metschnikowia isolates 02.11.1.21 and 02.4.3.38 on yeasts and bacteria were tested on plates flooded with cells of the test organisms. The media used were PDA for yeasts, MRS agar for O. oeni, and LB agar for E. coli. One yeast isolate was streaked or dropped on each plate. The incubation temperatures were 25°C for yeasts, 30°C for O. oeni, and 37°C for E. coli.
Effect of iron and tropolone on pigment production and antagonism.
The effect of ferric ions on pigment production was studied on PDA plates supplemented with FeCl3. The plates were flooded with conidia. One yeast isolate was then inoculated into the center of each plate. The sensitivity of conidial germination to tropolone was tested by placing 50-µl samples of aqueous solutions of the compound into wells (diameter, 5 mm) cut into PDA plates previously flooded with suspensions of Botrytis conidia. The widths of the pigmented halos and inhibition zones were measured after 3 to 10 days of incubation at 25°C.
Mutagenesis and mutant characterization.
Yeast cells in overnight YPDL cultures (50 ml medium in a 200-ml Erlenmeyer flask; incubation at 100 rpm in a gyratory shaking incubator for 14 h at 25°C; inoculum, 104 cells/ml) were collected by centrifugation (1,500 x g, 5 min, 10°C), resuspended in fresh YPDL (107 cells/ml) supplemented with 300 µg/ml 1-methyl-3-nitro-1-nitrosoguanidine (catalog no. 12,994-1; Sigma-Aldrich), and incubated in a shaking incubator (100 rpm) at 25°C with daylight (on a laboratory bench in an air-conditioned room). After 30 min, samples were diluted and spread on PDA plates supplemented with 10 µg/ml FeCl3. After 5 days of incubation at 25°C in continuous darkness, colonies that differed from the wild type in colony color or in the size of the pigmented halo were isolated. Colonies with these morphological properties occurred with a frequency of 8 x 104. The survival rate was 23%. The 26S rRNA gene from these colonies was sequenced, and strains that had sequences that were different from that of the mutagenized wild type were discarded. Pigmentation, halo formation, and antifungal activity of the mutants were tested as described above. Because of the lack of hybridization methods for Metschnikowia, the mutants were not tested for allelism or to determine the numbers of mutations in their genomes.
Nucleotide sequence accession numbers.
Partial 26S rRNA gene sequences of the following strains were deposited in the GenBank database: Metschnikowia strains 02.4.3.38 (accession no. DQ666681) and 02.11.1.21(DQ666682) and B. cinerea strain 3318 (DQ666677).
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FIG. 1. Halo formation and inhibition of germination of B. cinerea conidia by Metschnikowia isolate 02.11.1.21. (A) Pigmented halo on YPD supplemented with 0.005 mg/ml FeCl3. (B) Inhibition zone on YPD. (C to F) Microscopic images of conidia on PDA. m, Metschnikowia colony; n, group of nongerminating conidia (within a colored halo); d, conidia with dying germination tubes (at the edge of a colored halo); g, group of germinating conidia developing mycelium (outside a colored halo). (C) Bar = 120 µm. (F) Bar = 50 µm.
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Pigment production in cultures of the isolates.
Pulcherrimin production is a characteristic of M. pulcherrima, but the intensity of pigmentation varies and depends on medium composition (21, 26). The strains isolated in this study varied in color intensity and in the size of the reddish halos that surrounded the colonies (Table 2). The most pigment was produced on YPD, while colonies on PDA and SMA plates either were colorless (white) or turned slightly pink with a barely visible pink halo. Supplementation of the media with FeCl3 enabled pigment production on these media, and the color intensity increased with the iron concentration (Table 2). This finding is consistent with the proposed role of iron in the chemical structure of pulcherrimin (26).
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TABLE 2. Formation of pigmented halo and inhibition of the growth of B. cinerea around the colonies of selected Metschnikowia isolates on PDA platesa
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If the pigment is insoluble in water and cannot diffuse into the medium, then it must be formed in situ from its soluble precursors. Pulcherrimin is formed from leucine through the intermediates cyclo-L-leucyl-L-leucyl and pulcherriminic acid (29). Since all of these compounds are water soluble, any of them could be the secreted precursor from which the pigmented halo is formed around the colonies. To test the possibility that leucine is the secreted precursor, the most active Metschnikowia isolates were streaked on SMA plates seeded with cells of the leucine-dependent strain Schizosaccharomyces pombe leu1. No cross-feeding of the Schizosaccharomyces mutant was observed around the Metschnikowia colonies, indicating that the Metschnikowia cells did not excrete leucine and that the secreted precursor of pulcherrimin is not leucine.
Inhibition of germination of Botrytis conidia.
Fifteen colonies with Botrytis morphology were isolated, and their D1/D2 rRNA gene domains were sequenced, which confirmed their identification as B. cinerea (100% identity with the accession no. AF250919 sequence, the sequence of a B. cinerea [Botryotinia fuckeliana] strain isolated from Californian grapes). One of these isolates, strain 3318, was used as a tester (GenBank accession no. DQ666677). The other tester was strain 980, a strain isolated from grapes in France (22).
All Metschnikowia isolates inhibited germination of the conidia of both B. cinerea testers (Fig. 1C and D) if the spores were within 0 to 7 mm (depending on the strain and the amount of FeCl3 added to the medium) of the Metschnikowia colony. At 0 to 6.5 mm from the Metschnikowia colony (depending on the strain and the amount of FeCl3 added to the medium), the conidia germinated but died after forming short germination tubes (Fig. 1E), suggesting that the presence of the Metschnikowia isolates could inhibit hyphal growth. The distance across which the Metschnikowia isolates caused this antagonistic effect varied by strain. Strains that produced larger halos usually also had larger inhibition zones (Table 2). Outside the inhibition zones, the conidia germinated uniformly and formed dense mycelium (Fig. 1B and F). After 5 to 6 days of incubation, the mycelium began to grow slowly into the inhibition zone and gradually reduced the size of the zone. No differences were detected between the two Botrytis tester strains.
Inhibition of growth of Botrytis hyphae.
The Metschnikowia isolates also were inoculated ahead of the growing front of the Botrytis mycelium. After a few hours of incubation, mycelia near the yeast colony stopped growing and the hyphal morphology changed (Fig. 2A). Many hyphae lysed at the tip, and in others extensive protoplasmic coagulation occurred. Forty-eight to 72 h later some hyphae resumed growing and grew slowly toward the yeast colony.
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FIG. 2. Degeneration of hyphae at the edge of the inhibition zone around a colony of Metschnikowia isolate 02.11.1.21. (A) B. cinerea 3318. (B) A. pullulans 27/2.36. (C) M. piriformis. v, viable hypha; r, hypha ruptured near its tip; c, hypha with coagulated cytoplasm. Bar = 20 µm.
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FIG. 3. Effect of FeCl3 on halo formation and inhibition of the growth of B. cinerea on PDA. (A) Without FeCl3. (B) With 0.005 mg/ml FeCl3. (C) With 0.02 mg/ml FeCl3. m, Metschnikowia colony; b, Botrytis mycelium.
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FIG. 4. Inhibition of B. cinerea by tropolone. Fifty microliters of a solution containing 0.5 mg tropolone was placed into a hole in the middle of the plate. The asterisk indicates the ring of stimulated mycelial growth. The arrow indicates hyphae growing into the inhibition zone. b, Botrytis mycelium.
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TABLE 3. Production of pigmented halos and the inhibition of B. cinerea growth around colonies of wild-type Metschnikowia isolates and mutants on PDA platesa
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TABLE 4. Antagonistic effects of Metschnikowia against various microorganisms
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FIG. 5. Effect of Metschnikowia isolate 02.11.1.21 on yeasts. (A) S. cerevisiae. (B) C. zemplinina. (C) A. pullulans (yeast phase). m, Metschnikowia colony. There is a zone (marked with an asterisk) in which there is increased melanin production in the A. pullulans lawn.
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The reduction in halo size observed when the medium was supplemented with FeCl3 suggests that the cells do not secrete the pigment but instead secrete a soluble, diffusible precursor that forms the pigment in the medium when it encounters iron. At low iron concentrations the precursor diffuses further from the yeast colony before it is immobilized by iron, resulting in a wider but paler halo. At higher iron concentrations the halos are smaller because the precursor molecules do not diffuse as far before they bind sufficient iron for pigment production. Since the pigment in these cases is concentrated in a smaller area, the color of the resulting halos is more intense. At even higher concentrations of iron, no halo is produced, suggesting that the entire precursor pool is converted to pigment within the cells. At these concentrations the yeast colonies are dark red (maroon).
The pigment, pulcherrimin, is synthesized from L-leucine through cyclo-L-leucyl-L-leucyl and pulcherriminic acid (29). Since the Metschnikowia colonies do not cross-feed yeast leucine auxotrophs, leucine can be ruled out as the secreted precursor. Chemical analysis of the medium is needed to determine which of the other two intermediates is released.
As indicated by Kluyver et al. (26), Beijerinck hypothesized that pigment production is a defense reaction of the M. pulcherrima cells against the presence of excess iron. However, both Beijerinck and Kluyver et al. (26) described colorless colonies in their M. (Torula, Candida) pulcherrima cultures, which argues against such a role. If the organism does need protection against iron, then the inability to form pigment should be selected against. The pigmentless mutants isolated in this study grew like the wild type even at iron concentrations that turned the wild-type colonies dark red. Thus, pigment production is not essential for growth, even under high-iron conditions, so a protection function is unlikely and pigment production must benefit the organism in some other manner.
The antimicrobial activity of the isolates suggests that a biological function for pigment production might be to inhibit the growth of other microbes that are potential competitors for nutrients. The pulcherrimic acid-ferric ion complex formed in the halos depletes the iron in the substrate and creates an environment unsuitable for growth of microbes that require more iron for growth. This hypothesis is based on the observed correlation between the size of the pigmented halos around the Metschnikowia colonies and the size of the zones within which the growth of Botrytis was inhibited. Metschnikowia isolates that produced wider halos also had a stronger antagonistic effect on B. cinerea. The mutants that lacked pigment did not affect Botrytis, and strains producing low levels of pigment also had lower levels of antifungal activity. Any reduction in halo size due to supplementation of the medium with iron also reduced the size of the inhibition zone.
An alternative hypothesis is that either the pigment or its precursors have antimicrobial activity and that iron depletion is an incidental and harmless side effect. I cannot exclude this possibility as I have not tested purified pigment or its precursors for this activity; however, the iron-binding agent tropolone (17) also inhibits the germination of conidia and the growth of the test organisms. Iron also may be involved in plant antifungal defense mechanisms since infection by B. cinerea increased the Fe(III) levels in tissues of Capsicum annuum and Arabidopsis thaliana (15, 32).
Sequestration of iron is a widespread mechanism of antimicrobial antagonism. Siderophores (low-molecular-weight, ferric ion-specific chelating agents) that deplete the iron in the environment by transporting it into the cells of the siderophore-excreting microorganisms can inhibit the growth of other microbes that do not have similar mechanisms (6, 23, 24, 33). The ferrisiderophore complexes are water soluble, which makes them accessible to the specific membrane receptor and transport systems that mediate their transport into the cell (for a review, see reference 51). The pigment produced by the Metschnikowia cultures also might act as a siderophore, but the results of this study make this possibility unlikely. The Metschnikowia pigment is not soluble in water and cannot diffuse in the agar medium, so rather than solubilizing the iron in the environment, it immobilizes it. Nevertheless, low-molecular-weight forms of the pigment complex might diffuse to the cell and deliver ferric ions.
The accumulation of the pigment within a Metschnikowia colony at higher iron concentrations also argues against a siderophore function. Microscopic observations made by Kluyver et al. (26) indicate that in highly pigmented colonies the pigment is encrusted on the cell wall and partially covers the outside of the cell. Siderophore-iron complexes do not accumulate in the cell but instead dissociate to free the iron for cellular metabolism (13). Another difference between the Metschnikowia pigment and siderophores is in the regulation of their production. Siderophores usually are produced under iron-limiting conditions (for a review, see reference 24), whereas the Metschnikowia pigment is formed constitutively, at both low and high ferric ion concentrations.
Based on microscopic observations of the test organisms, the iron-limited environment created by a Metschnikowia colony is lethal to germinating conidia. This finding is consistent with the results of Charlang et al. (8), who found that the conidia of Aspergillus nidulans and Penicillium chrysogenum required intake of a large amount of iron for germination. More recently, rhodotorulic acid, a siderophore produced by Rhodotorula glutinis, was shown to reduce conidial germination of Penicillium expansum (6) and B. cinerea (43). However, there have been no studies of the cytological effects of iron limitation on mycelium. The observation that hyphae crack when they enter the pigmented zones that form around the Metschnikowia colonies is a new finding and demonstrates that iron starvation elicits complex physiological changes in the fungal cells.
Interestingly, the inhibition of hyphal growth is transitory, and after a lag period of a few days the mycelium recovers from the shock and begins to grow slowly into the inhibition zone. The pigment may degrade with time (and release iron), or iron may be supplied to the growing hyphal tips by cytoplasmic transport from pigment-free areas of the medium. Since recovery also was observed at the edges of the tropolone-generated inhibition zones, the latter possibility is more likely. Numerous fungi can transport nutrients, including iron, between various parts of the mycelium (5, 17).
Some test organisms (O. oeni, B. cinerea, and C. zemplinina) formed rings of thicker growth around the inhibition zones. The mechanism of this stimulation is not known, but the stimulation may be attributable to the diffusion of nutrients from the inhibition zones. For example, for O. oeni, a bacterium that is common on grapes and in wines (28), the ring of facilitated growth was much wider than the inhibition zone. The polymorphic organism A. pullulans also responded to the presence of Metschnikowia in two ways. In addition to growth inhibition, the presence of Metschnikowia also elicited melanin production by the yeast-like cells, a process characteristic of chlamydospores (39).
In summary, Metschnikowia yeasts growing on noble-rotted grapes can strongly antagonize the growth of various filamentous fungi, yeasts, and bacteria by producing an insoluble pigment that depletes the iron in the environment. The immobilization of iron rather than incorporation of iron into the antagonizing strain is a novel method of extracting iron from the environment for biological control. Such a mechanism has not been demonstrated previously and may provide a new strategy for use in the biological control of various plant pathogens.
This research was supported by grant GND RET provided by the Hungarian National Office for Research and Technology.
Published ahead of print on 21 August 2006. ![]()
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