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Applied and Environmental Microbiology, December 2006, p. 7925-7929, Vol. 72, No. 12
0099-2240/06/$08.00+0 doi:10.1128/AEM.01548-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Characterization of a Vibrio alginolyticus Strain, Isolated from Alaskan Oysters, Carrying a Hemolysin Gene Similar to the Thermostable Direct Hemolysin-Related Hemolysin Gene (trh) of Vibrio parahaemolyticus
Narjol González-Escalona,1,2*
George M. Blackstone,2 and
Angelo DePaola2
Department of Food Science, North Carolina State University, Raleigh, North Carolina,1
FDA Gulf Coast Seafood Laboratory, Dauphin Island, Alabama2
Received 5 July 2006/
Accepted 9 October 2006

ABSTRACT
A
Vibrio strain isolated from Alaskan oysters and classified
by its biochemical characteristics as
Vibrio alginolyticus possessed
a thermostable direct hemolysin-related hemolysin (
trh) gene
previously reported only in
Vibrio parahaemolyticus. This
trh-like
gene was cloned and sequenced and was 98% identical to the
trh2 gene of
V. parahaemolyticus. This gene seems to be functional
since it was transcriptionally active in early-stationary-phase
growing cells. To our knowledge, this is the first report of
V. alginolyticus possessing a
trh gene.

INTRODUCTION
Vibrio parahaemolyticus is a gram-negative, estuarine bacterial
species and is the leading cause of seafood-associated bacterial
gastroenteritis worldwide (
3,
4). During a
V. parahaemolyticus outbreak associated with Alaskan oysters in 2004 (
12), numerous
V. parahaemolyticus strains were isolated from oysters. Many
of these strains carried both thermostable direct hemolysin
(
tdh) and thermostable direct hemolysin-related hemolysin (
trh)
genes, which are associated with pathogenicity (
1,
11,
13,
17).
The
tdh gene can be subdivided by sequence similarities into
five subtypes (
tdh1 through
tdh5), sharing 96 to 98% identity
(
14). In contrast, there exists among the
trh genes a significant
nucleotide sequence variation, and they can be clustered into
two main subgroups,
trh1 and
trh2, which share 84% identity
(
9).
During investigation of the Alaskan V. parahaemolyticus outbreak of 2004, two strains isolated from oysters tested positive for the presence of the trh gene but were negative for the presence of the tlh gene (thermolabile hemolysin), reportedly in all V. parahaemolyticus strains (2, 21, 22, 26). These strains were also urease positive, indicating the presence of the ure gene, which is genetically linked to the trh gene in V. parahaemolyticus (6, 7). The trh gene was detected using an alkaline phosphatase-labeled DNA probe designed specifically for the detection of trh (16). The presence of the trh but not the tlh gene in those isolates was very unusual, since the trh gene has been reported only in V. parahaemolyticus. These results suggest that vibrios other than V. parahaemolyticus could be a reservoir for trh in the environment.
In the present study, we described the characterization of a Vibrio alginolyticus strain isolated from Alaskan oysters that possesses and expresses a trh gene with 98% homology to the trh2 gene of V. parahaemolyticus.

Bacterial strains and phenotypic characterization.
V. parahaemolyticus strain 93A-5807 (clinical isolate) was obtained
from the GCSL culture collection. This strain and those described
below were originally isolated from thiosulfate citrate bile
sucrose agar. Individual colonies were selected and streaked
for purification on T1N1 agar as recommended in the FDA's Bacteriological
Analytical Manual (BAM) (FDA/CFSAN;
http://www.cfsan.fda.gov/
ebam/bam-9.html).
Single-well-isolated colonies were selected for all phenotypic
and genotypic assays.
V. parahaemolyticus strains Vp 28 (AK
2228-1 0826), Vp 32 (AK 2162-1B 1054B), and Vp 33 (AK 2162-1A
1054A) were isolated from Alaskan oysters during the 2004 outbreak
and were
tdh,
trh,
tlh, and urease positive. The presence of
tdh and
tlh was determined using alkaline phosphatase-labeled
DNA probe colony hybridization as described in the BAM. The
presence of
trh was determined using alkaline phosphatase-labeled
DNA probe colony hybridization (
16). This assay was conducted
twice to confirm that there was no error in the detection of
this gene. Urease production was determined as recommended in
the BAM.
V. alginolyticus ATCC 33787 was kindly provided by
Marlene Janes of Louisiana State University.
V. alginolyticus strains Va 29 (AK 1296-A2-1 1296) and Va 30 (AK 2208-1B 1073B)
were also isolated from Alaskan oysters during the 2004 outbreak
and were
trh positive but
tlh and
tdh negative by the hybridization
assay described in the BAM. They produced yellow colonies on
thiosulfate citrate bile sucrose agar and grew in the presence
of 10% NaCl, and biochemical characterization with API-20E (bioMérieux,
Inc., Hazelwood, MO) (Table
1) indicated that these two isolates
were
V. alginolyticus. All strains were grown at 37°C in
Luria-Bertani medium (LB).

DNA extraction, PCR amplification, cloning, and sequencing of the trh-like gene.
In order to confirm the presence of structural
trh genes in
V. alginolyticus strains Va 29 and Va 30, we designed a pair
of primers, trh_1F and trh_570R (Table
2), that amplified both
trh subgroups (
9) and hybridize at the 5' and 3' ends, respectively,
of the
trh genes reported in GenBank (
http://www.ncbi.nlm.nih.gov).
V. parahaemolyticus strains Vp 93A-5807, Vp 28, Vp 32, and Vp
33 were used as a positive control for the
trh gene. Bacterial
DNA was extracted using a DNeasy tissue kit (QIAGEN, Valencia,
CA). Figure
1A shows the relative positions of the primers employed
in this study. The PCR amplification and analysis of amplicons
were performed as previously described (
18).
For the two
V. alginolyticus strains, only the Va 29 isolate
yielded a positive reaction when these primers were employed
(Fig.
1B), although the observed band was smaller than those
obtained for Vp 28, Vp 31, Vp 32, and Vp 93A-5807. The
trh PCR
amplification was repeated five times with the same results,
confirming the presence of the
trh gene in Va 29 (results not
shown). Additional primers (Table
2 and Fig.
1A) targeting other
regions of reported
trh sequences were also employed and indicated
that strain Va 30 possesses a
trh-like gene. The target sequence
for the trh_570R primer located near the 3' end of the
trh gene
appears to be missing or modified in this strain (Fig.
1C).
As only Va 29 appeared to carry the entire
trh gene, it was
selected for further study. The sequence of the
trh-like gene
for this isolate was determined. The
trh amplification products
of strains Vp 28, Vp 29, and Vp 93A-5807 were used for cloning.
PCR products were purified with a QIAquick PCR purification
kit (QIAGEN) and later cloned into the TOPO TA-cloning vector,
according to the manufacturer's recommendations (Invitrogen,
Carlsbad, CA). Clones were screened for the presence of plasmid
with inserts by PCR as indicated above (Invitrogen), except
that the primers used for PCR were trh_1F and trh_570R. Plasmids
containing the fragment of interest were purified with a QIAprep
Spin Miniprep kit (QIAGEN). Clones containing the
trh genes
from strains Vp 28, Va 29, and Vp 93A-5807 were selected and
sequenced in both directions. The sequencing reactions were
run by MCLAB (San Francisco, CA), employing primers M13F, M13R,
trh_20F, and trh_292R (Table
2). DNA sequences were inspected
individually and manually assembled. The alignments and sequence
similarities were determined using BioEdit (
5). Sequence analysis
indicated that
V. parahaemolyticus strains Vp 28 and Vp 93A-5807
carried a
trh1 gene, which is typical of most
V. parahaemolyticus isolates that also possess
tdh (
17). However, the
trh-like gene
of the Va 29 strain was 98% identical to a
trh2 gene of
V. parahaemolyticus reported in GenBank (Fig.
2).

Determination of V. parahaemolyticus species DNA-specific marker pR72H.
Previous results obtained by Ruimy et al. (
20) showed that the
16S rRNA gene sequences of
V. alginolyticus and
V. parahaemolyticus are highly similar (99%) and consequently are unreliable phylogenetic
markers for differentiating those species (
20). To further exclude
the possibility that this was an atypical
V. parahaemolyticus strain, we examined Va 29 for an additional (other than
tlh)
V. parahaemolyticus species-specific DNA marker, pR72H (
10).
This test was previously validated using DNA-DNA hybridization
between
V. alginolyticus and
V. parahaemolyticus (
19). PCR was
used to amplify a fragment (320 or 387 bp long) of an unknown
function that is highly conserved in
V. parahaemolyticus and
absent in
V. alginolyticus. Primers Vp33 and Vp32 (Table
2)
were used under PCR conditions similar to those for the
trh gene, except that 60°C was used as the annealing temperature.
PCR products (10 µl each) were separated by agarose gel
electrophoresis in a 2% agarose gel (Invitrogen) run at 75 V
for 1.5 h in 1
x Tris-acetate-EDTA. Amplification products were
visualized by ethidium bromide staining. Figure
3 shows that
only strains Vp 93A-5807, Vp 28, Vp 32, and Vp 33 possess this
fragment, indicating that strains Va 29 and Va 30 were not
V. parahaemolyticus.

Determination of the transcriptional activity of the trh2 gene in Va 29.
To determine whether the
trh2 gene of Va 29 was actively expressed,
we isolated total RNA from early-stationary-phase (optical density
at 600 nm = 1.0) cells of the Vp 28 and Va 29 strains. The presence
of
trh mRNA was determined by reverse transcription (RT)-PCR
using primers trh_1F and trh_570R (Table
2) for the
trh gene.
Briefly, strains Vp 28 and Va 29 were incubated at 37°C
in LB until reaching an optical density at 600 nm of 1.0. One
milliliter of each culture was centrifuged for 5 min at 5,000
x g. The pellets were resuspended in 100 µl of Tris-EDTA
buffer. RNA extraction was carried out using an RNeasy mini
kit (QIAGEN). The RNA was eluted with 50 µl of nuclease-free
water. Prior to RT-PCR, 10-µl portions of each RNA solution
were treated with DNase I (Invitrogen) for 15 min at room temperature,
according to the manufacturer's instructions. DNase I was then
inactivated by adding 1 µl of 25 mM EDTA solution to each
reaction mixture and heating it for 10 min at 65°C. Portions
(3 µl) of each reaction mixture were used as a template
for RT-PCR. RT-PCR was carried out with a OneStep RT-PCR kit
as indicated by the manufacturer (QIAGEN), using primers trh_1F
and trh_570R. The amplification products were examined by electrophoresis
in polyacrylamide gels and visualized by staining them with
silver nitrate as previously described (
18). After the RT-PCR,
a single band equal in size to the band observed after
trh DNA
PCR amplification using the same primers was observed for each
strain (Fig.
1A, lanes 2 and 3, and
4, lanes 2 and 3). This
indicates that the
trh gene in each strain was actively expressed
in early-stationary-phase cells. DNA contamination was ruled
out, as PCR amplification of the same RNA samples used in the
RT-PCR did not give any product (data not shown). While transcriptional
activity does not always result in full translational expression
and function, it is likely that a functional protein is produced
in this case, because the two
trh genes have 98% identical DNA
sequences and differ at only two amino acid residues. Additionally,
V. alginolyticus is the closest relative of
V. parahaemolyticus,
further increasing the likelihood that a functional
trh2-like
toxin will be produced in
V. alginolyticus.

Concluding remarks.
Being an autochthonous marine bacterium,
V. alginolyticus is
probably subjected to a high level of recombination with the
diverse, closely related bacterial strains populating marine
environments. Marine environments provide a habitat where vibrios
can be exposed to high levels of gene transfer by transduction
(
8), and consequently, putative transfers of virulence factor
genes like
trh can occur between marine bacteria.
This is the first report of Vibrio spp. other than V. parahaemolyticus possessing and expressing the pathogenicity marker trh of V. parahaemolyticus. The tdh gene has been reported in vibrios other than V. parahaemolyticus (26), and some authors (15, 23) have suggested that tdh and possibly trh were acquired by ancestral V. parahaemolyticus strains from another organism. The presence of a trh2 gene actively expressed in a V. alginolyticus strain supports the hypothesis that this gene is transferred among vibrios. Xie et al. (25) showed that V. alginolyticus often possessed homologues of virulence genes (other than trh) of V. parahaemolyticus and V. cholerae, suggesting that V. alginolyticus can be a reservoir for these genes in the aquatic environment. The practical implications of these results are that detection of the trh gene in mixed cultures, such as broth enrichments or nucleic acid extracts of seafood or environmental samples, does not always imply that pathogenic V. parahaemolyticus is present.

Nucleotide sequence accession numbers.
The
trh gene sequences have been deposited in GenBank under
accession numbers DQ359748 (
trh1 Vp 93A-5807), DQ359749 (
trh1 Vp GCSL28), and DQ359750 (
trh2 Va GCSL29).

ACKNOWLEDGMENTS
We thank J. L. Nordstrom for technical assistance and K. Calci
for his assistance with the preparation of the manuscript. We
thank the Alaska Department of Environmental Conservation for
providing strains.
This study was supported by a grant from the U.S. Department of Agriculture, National Research Initiative, Competitive Grants Program, Epidemiological Approaches to Food Safety, project no. 2004-35212-14882.

FOOTNOTES
* Corresponding author. Mailing address: FDA Gulf Coast Seafood Laboratory, 1 Iberville Dr., Dauphin Island, AL 36528. Phone: (251) 690-3074. Fax: (251) 694-4477. E-mail:
narjol{at}gmail.com.

Published ahead of print on 20 October 2006. 

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Applied and Environmental Microbiology, December 2006, p. 7925-7929, Vol. 72, No. 12
0099-2240/06/$08.00+0 doi:10.1128/AEM.01548-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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