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Applied and Environmental Microbiology, December 2006, p. 7933-7940, Vol. 72, No. 12
0099-2240/06/$08.00+0 doi:10.1128/AEM.00659-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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Lidia Muscariello,2
Frederique Lorquet,1,
Aline Stukkens,1
Deborah Prozzi,1
Margherita Sacco,2
Michiel Kleerebezem,3 and
Pascal Hols1*
Unité de Génétique, Institut des Sciences de la Vie, Université Catholique de Louvain, Croix du Sud 5, B-1348 Louvain-la-Neuve, Belgium,1 Dipartimento di Scienze Ambientali, Seconda Università di Napoli, Via Vivaldi 43, 81100 Caserta, Italy,2 Wageningen Centre for Food Sciences, NIZO food research, P.O. Box 20, 6710 BA Ede, The Netherlands3
Received 22 March 2006/ Accepted 25 September 2006
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P) by pyruvate oxidase (POX), and dephosphorylation of acetyl
P to acetate by acetate kinase (ACK). This last step produces ATP, which is believed to provide the cells with the additional energy needed for survival in the stationary phase. Acetate itself could also be involved in increased survival by maintaining the pH homeostasis (12, 20). Concerning applications, the maintenance of a high viability in the stationary phase under aerobic conditions could be relevant in the development of long-shelf-life probiotic dairy products containing L. plantarum (14, 29). Besides its implication in cell survival, acetate is also an important flavor compound of fermented products (e.g., sourdoughs) in which L. plantarum plays a major role (4, 5). Therefore, a better understanding of the pathways involved in acetate production in this species could contribute to the improvement of fermentation processes and products. Previously, it has been established that the oxidative decarboxylation of pyruvate catalyzed by POX is a key step in the lactate-to-acetate conversion pathway (12, 27). A null mutant for the gene encoding PoxB, the major POX of L. plantarum, shows a decrease in acetate production up to 80% compared to the parent strain, depending on the growth conditions (12).
This LDH-POX-ACK pathway is under control of two environmental factors: sugar and oxygen availability. Regulation takes place essentially at the level of POX activity, which is induced by oxygen or hydrogen peroxide and repressed by glucose (12, 19, 20, 27). In the presence of excess glucose, POX activity is strongly repressed as a result of the carbon catabolite repressor protein CcpA binding to the cre sequence located in the poxB promoter (12). The repression is relieved when glucose concentration becomes limiting for growth, explaining the peak levels of poxB mRNA and the corresponding POX activity in the early stationary phase of growth. This CcpA/cre-dependent repression of poxB expression is not observed when cells are grown with a non-PTS sugar such as maltose (12). Oxygen regulation takes place at two levels: first, it is required as a substrate of the POX enzyme and, second, it strongly induces transcription from the poxB promoter by an unknown mechanism (12).
Previous work suggested the presence of multiple POX-encoding genes in L. plantarum since disruption of the poxB gene alone did not completely abolish POX activity (12). Indeed, the genome sequence of L. plantarum WCFS1 revealed the presence of four other putative POX-encoding genes (lp_3587 [poxC], lp_0849 [poxD], lp_0852 [poxE], and lp_2629 [poxF]) (9, 12). This high redundancy of putative POX genes in L. plantarum is unique among lactic acid bacteria since similarity searches for orthologous genes in all publicly available genome sequences revealed the presence of not more than two pox genes per genome.
The present study focuses on the contribution of each additional pox gene to the global POX activity and evaluates the physiological importance of POX activity and acetate production by L. plantarum cells during the stationary phase of aerobic growth.
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FIG. 1. Transcriptional analysis of poxF in L. plantarum. (A) Northern blot analysis of poxF expression in the wild-type Lp80 strain. Cells were grown in aerobiosis with glucose 0.2% and harvested at different times during growth (indicated at the top). Escherichia coli rRNA 16S (1.60 kb) and 23S (3.20 kb) and Caenorhabditis elegans rRNA 18S (1.82 kb) and 28S (3.65 kb) were used as molecular markers (left). (B) RNA electrophoresis gel used in the Northern blots presented in panel A. (C) Primer extension analysis of poxF mRNA. Primer extension products were obtained by using oligonucleotide poxF1 and the total RNA extracted from L. plantarum LM3 or LM3-2 ( ccpA) grown with glucose 2% (H) or 0.2% (L). The poxF transcription start nucleotide is indicated by an asterisk. As a reference, a sequencing reaction was performed on poxF using the same primer. (D) Nucleotide sequence of the poxF promoter region in L. plantarum Lp80. Putative 35 and 10 boxes of a vegetative promoter are underlined; the ribosome-binding site (RBS) and cre sequence are boxed. The transcription start nucleotide (+1) is in boldface. The N-terminal PoxF deduced amino acid sequence is shown.
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Since it was found that only PoxF contributed significantly to POX activity (see below), only the transcription analysis for the poxF gene will be presented here. The poxF mRNA was detected as a single band with a size of approximately 2 kb, indicating that poxF is transcribed as a monocistronic mRNA (Fig. 1A). The abundance of the poxF transcript displayed a profile similar to that of the poxB mRNA (12): it was barely detectable during exponential growth (3 h) and became strongly expressed upon glucose exhaustion (5 h). Unlike the poxB mRNA level, which was decreased strongly in stationary phase (11 h of growth) (12), the poxF transcript was stably maintained until 11 h of growth (Fig. 1A).
The transcription start of the poxF transcript was mapped by primer extension (12) (Fig. 1C and D). This analysis was carried out by using RNA obtained from L. plantarum strain LM3 since a ccpA mutant derivative of this strain was already available (LM3-2) (21). No extension product could be observed in cells grown in the presence of 2% glucose (Fig. 1C), supporting the regulation of poxF expression by carbon catabolite repression. As a control, the same analysis was carried out on total RNA extracted from L. plantarum Lp80 grown on 0.2 and 2% glucose. As expected, the transcription start was found to be identical in strains LM3 and Lp80, in agreement with the fact that the LM3 poxF promoter region is 100% identical to the corresponding region of L. plantarum Lp80. Similar to what was observed in L. plantarum LM3, expression of the poxF gene in L. plantarum Lp80 was repressed by high glucose concentrations (data not shown). Derepression of poxF expression in the ccpA mutant strain (LM3-2) when grown in excess glucose conditions further confirmed the role of CcpA in poxF transcription control (Fig. 1C).
These data established ccpA-mediated carbon catabolite control of poxF expression. Similar transcriptional patterns with an absence of extension products in the presence of 2% glucose were observed for the poxC and poxE genes (data not shown), while no transcript of poxD could be detected in strains Lp80 and LM3 under any condition tested. These results support a role of CcpA in the global control of pox-like gene expression in L. plantarum.
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TABLE 1. Bacterial strains, plasmids, and primers used in this study
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TABLE 2. POX activity and acetate production of L. plantarum wild-type and pox mutants
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These results show that PoxF is involved in POX activity in L. plantarum grown on glucose, whereas PoxC, PoxD, and PoxE do not seem to participate in the POX activity. In addition, PoxB and PoxF appear to be differentially regulated when maltose is used as a carbon source: PoxF activity seems to be repressed, whereas PoxB activity is not affected, confirming that PoxB is the major POX under these conditions (12). Although the negative effect of maltose on POX activity has been previously reported in the L. plantarum poxB mutant (12), we are not aware of other observations of such a maltose repression effect, and there is no obvious hypothesis on its mechanism.
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poxB mutant background (FL104) using pGIF031 as described above, generating the double poxB poxF mutant strain FL112. No POX activity could be detected in the poxB poxF mutant background in cells grown on either glucose or maltose (Table 2), demonstrating that PoxB and PoxF are the two major POXs in L. plantarum under the conditions tested. As expected, lactate-to-acetate conversion in the POX-deficient FL112 strain was dramatically affected: this metabolite only accounted for 4 and 3% of the fermentation end products after 30 h of growth on glucose and maltose, respectively (Table 2).
To evaluate the effects of the reduced acetate production on the physiology of L. plantarum, the optical density (OD) at 600 nm and cell viability (measured as CFU/ml) of the wild-type and its single and double poxB poxF mutant derivatives were monitored throughout aerobic growth in MRS-CA supplemented with 0.2% glucose. Moreover, lactate and acetate concentrations in the supernatant of these cultures were measured by high-pressure liquid chromatography, while cell lysis in stationary phase was monitored by assaying the NAD-dependent LDH activity in the supernatant as described previously (12).
No significant difference could be observed between the four strains during the exponential phase of growth (Fig. 2). Glucose was completely exhausted and converted to lactate after 6 h (data not shown). Lactate concentrations peaked between 6 and 7 h of growth and were equivalent in all strains (Fig. 2C). As previously reported (12), the wild-type strain rapidly converted lactate to acetate during the stationary phase, whereas this process was slowed down in the poxB mutant strain (Fig. 2C). Conversion of lactate to acetate also occurred in the poxF mutant strain but was only slightly delayed compared to the wild-type strain (Fig. 2C). In these three strains, it appeared that more acetate was produced than lactate consumed, resulting in an apparent carbon balance greater than 1 (Fig. 2C) (12). This suggests that the additional acetate was produced at the expense of one or more compounds present in the growth medium, as previously reported (6, 12, 20). Recently, Liu et al. showed that the catabolism of amino acids was responsible for acetate production by growing and nongrowing cells of L. plantarum (10). In addition, L-serine catabolism was shown to play a key role for acetate production in this species (10). The authors of that study suggested that L-serine was deaminated via a serine dehydratase into pyruvate, which was subsequently converted into acetate by the POX enzyme (11).
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FIG. 2. Growth and acetate production by L. plantarum strains affected in POX activity. The wild-type Lp80 ( ), poxB mutant ( ), poxF mutant ( ), and poxB poxF double-mutant ( ) strains of L. plantarum were grown in aerobic conditions at 28°C in MRS-CA supplemented with 0.2% glucose (A, C, E, and G) or 0.2% maltose (B, D, F, and H). Growth was monitored as the OD at 600 nm (A and B). Lactate (solid lines) and acetate (dashed lines) concentrations were measured in the culture supernatants (C and D). Concentrations are given as the difference between the measured concentration and the initial concentration in the culture medium. (E and F) The release of LDH in the supernatant was assayed. The viability (CFU/ml) of the different strains is presented in panels G and H. The data presented are from one of at least three independent experiments that gave essentially the same results.
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-ketobutyrate) (28). It is interesting that the functionality of the POX enzymes could not be inferred from the in silico analysis of their primary sequence. Indeed, among all residues suggested to be required for the POX activity of PoxB (15-17, 31), PoxF did not show a higher level of conservation than PoxC, PoxD, or PoxE (see additional comments, Fig. S1, and Fig. S2 in the supplemental material). This emphasizes the need for in vitro and in vivo analyses, which is of particular importance for the construction of metabolic models based on automated annotation of a genome sequence. Acetate production was strongly reduced in the poxB poxF double mutant, showing that the LDH-POX-ACK enzyme combination is by far the major pathway for lactate-to-acetate conversion in L. plantarum. However, although no POX activity could be detected, acetate production was not completely abolished. Acetate production in this strain was very slow, and it cannot be excluded that this could be due to undetectable levels of POX activity. In addition, it should be noted that the assay used for POX activity determination is specific for H2O2-producing POX (24), possibly suggesting that acetate production in the poxB poxF double mutant is dependent on the presence of an H2O-producing POX such as PoxB of E. coli (25). Nevertheless, this H2O-producing POX activity should still be extremely low to account for the very low rates of acetate production observed in the poxB poxF double mutant. Finally, acetate could also be produced by a POX-independent pathway such as a combination of pyruvate dehydrogenase, phosphotransacetylase, and ACK. However, all attempts to detect pyruvate dehydrogenase activity in L. plantarum have been unsuccessful (3, 12, 19).
A strong correlation between acetate production rate and cell viability was revealed, i.e., the slower lactate was converted to acetate, the longer cells retained viability. The improved survival of the POX-deficient L. plantarum strain is reminiscent of the phenotype of a Staphylococcus aureus mutant defective for its cidC-encoded POX (22). However, improved cell viability of the S. aureus cidC mutant was correlated with the ability to utilize acetate, whereas in the POX-deficient L. plantarum strain, it is correlated with the inability to produce acetate.
This situation was unexpected since previous hypotheses from the literature in which acetate production from lactate during the stationary growth phase of L. plantarum cell cultures was associated with the maintenance of ATP production and pH homeostasis and thus believed to improve survival (12, 20). In our experimental setup with a low glucose concentration, the pH homeostasis hypothesis could not be invoked since the conversion of lactate to acetate has a marginal impact on the final pH of the culture medium. For instance, wild-type cells displayed a pH of 4.9 at the onset of the stationary phase when lactate production is maximal and a pH of 5.2 after 30 h when most of the lactate was converted into acetate. Similarly, all constructed pox mutants did not display external pH variations of more than 0.3 U during the stationary phase (data not shown).
An alternative hypothesis could be linked to the production of H2O2, a major product of the reaction catalyzed by POX, which is known to have toxic effects on many species of bacteria (13). In a strain with reduced POX activity, the production of this compound could be lowered (or slowed down), leading to better survival. However, we do not favor this hypothesis since L. plantarum is known to resist to high levels of H2O2 (18, 19). Moreover, studies on the POX (SpxB) of Streptococcus pneumoniae have shown that POX activity itself contributes to hydrogen peroxide resistance in this species by providing acetyl
P, which can serve as an alternative source of ATP during the oxidative stress generated by H2O2 (23).
Acetate itself does not seem to be responsible for cell death in the stationary phase since the addition of acetate (30 mM, corresponding to the maximal concentration observed for the wild-type strain after complete lactate consumption) to a glucose-grown culture of the poxB poxF double-mutant strain at the onset of the stationary phase did not revert the observed survival phenotype. Another possible explanation is that a product of the LDH-POX-ACK pathway acts as a messenger to regulate cell death and lysis in L. plantarum. As previously suggested (12), this could be achieved through ATP, i.e., the slow production of acetate observed in the poxB poxF double mutant would delay ATP depletion, and hence the proton motive force would not be dissipated as fast as in the wild-type strain, resulting in delayed autolysis.
We are grateful to K. Schanck, B. Delplace, and E. Viaene for technical assistance. We warmly thank J. Delcour for fruitful discussions and scientific advice. F.L. and P.G. hold doctoral fellowships from FRIA. P.H. is a research associate at FNRS.
Published ahead of print on 29 September 2006. ![]()
Supplemental material for this article may be found at http://aem.asm.org/. ![]()
Present address: Wageningen Centre for Food Sciences, NIZO food research, PO Box 20, 6710 BA Ede, The Netherlands. ![]()
Present address: Génétique Microbienne, INRA, 78352 Jouy en Josas Cedex, France. ![]()
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