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Applied and Environmental Microbiology, February 2006, p. 1157-1163, Vol. 72, No. 2
0099-2240/06/$08.00+0 doi:10.1128/AEM.72.2.1157-1163.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Biochemistry and Microbiology and Biotechnology Center for Agriculture and the Environment, Rutgers, The State University of New Jersey, New Brunswick, New Jersey 08901;,1 Department of Environmental Science, Faculty of Science, Kasetsart University, Bangkok, Thailand;,2 Department of Isotope Biogeochemistry, UFZ Centre for Environmental Research, Permoserstrasse 15, D-04318 Leipzig, Germany3
Received 24 June 2005/ Accepted 15 November 2005
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) estimated for each enrichment were almost identical (13.4
value of 14.4|
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Monitored natural attenuation is being increasingly implemented for a number of environmental pollutants. Natural processes, including dispersion, sorption, dilution, volatilization, and biodegradation, control plume migration and reduce MTBE concentration. Among these processes, biodegradation is the most effective in reducing the mass of contaminant in the environment in a sustainable way. One challenge, however, is to accurately assess the efficiency of the remediation techniques in situ. Generally, the contaminant concentration needs to be recorded to demonstrate losses over time. Other lines of evidence to demonstrate in situ biodegradation may be the detection of degradation intermediates, as well as the depletion of the electron acceptor. In the case of MTBE, the information collected is not always conclusive. tert-Butyl alcohol (TBA), the intermediate of MTBE degradation (7), is also a by-product of MTBE production. Moreover, the biodegradation of relatively more biodegradable gasoline components, such as benzene, toluene, ethylbenzene, and xylene, might lead to the depletion of electron acceptors. Therefore, novel techniques are needed as a tool to assess ongoing in situ MTBE biodegradation and to document in situ MTBE biodegradation in natural attenuation approaches.
Compound-specific stable isotope analysis has been proposed as a potential tool to demonstrate active in situ MTBE degradation. Moreover, with the appropriate isotopic enrichment factor (
), the extent of biodegradation can be estimated by using the following equation:
![]() | (1) |
-13C] represents the carbon isotope ratios of MTBE, C is the MTBE concentration, and the index value (0 or t) describes the beginning (0) or the reaction time (t). To date, there have been only four studies reporting carbon isotope fractionation studies during anaerobic MTBE degradation (16-17, 27, 35). We have previously demonstrated that anaerobic MTBE transformation to TBA under methanogenic conditions is accompanied with significant enrichment of 13C in the residual MTBE (27). Similar fractionation was also observed when methanogenesis was inhibited. Kolhatkar et al. (16) demonstrated carbon isotope fractionation during anaerobic MTBE degradation at a field site and in laboratory microcosms, although the electron-accepting processes were not identified. Kuder et al. (17) monitored carbon isotope fractionation during anaerobic MTBE by enrichments compared to fractionation in groundwater at nine gasoline spill-sites. The stable isotope fractionation studies of other environmental contaminants, such as chlorinated solvents (4, 12-13, 25) and petroleum hydrocarbons (1, 14, 18, 20, 24), suggest that a number of factors impact isotope fractionation. These factors include the microorganism, degradation mechanisms, growth conditions, and terminal electron-accepting processes. Anaerobic MTBE degradation has been demonstrated under methanogenic (21, 26-27, 32, 34), sulfate-reducing (26), denitrifying (5-6), manganese(IV)-reducing (6), and iron(III)-reducing (6, 8) conditions. Thus, to accurately assess anaerobic in situ MTBE degradation through carbon isotope analysis, the isotope enrichment factor needs to be determined for different microbial communities and electron-accepting conditions.
In this study, carbon isotope fractionation during MTBE degradation under sulfate-reducing and methanogenic conditions was studied with anaerobic cultures enriched from two different sediments. The isotopic enrichment factor (
) was estimated for each anaerobic condition. Evaluating the influence of cultures and electron-accepting conditions on carbon isotope fractionation contributes crucial information that strengthens the prospect of applying carbon isotope fractionation as a tool to demonstrate in situ MTBE biodegradation.
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A second set of enrichments were developed from microcosms established using sediment from CC. MTBE-degrading microorganisms were enriched under two different anoxic conditions, sulfate reduction and methanogenesis, following procedures previously described (26-27). For each enrichment condition, five replicate microcosms were set up, each with 5 g of wet sediment and 5 ml of appropriate medium. To investigate the role of sulfate reduction on carbon isotope fractionation, 20 mM sodium molybdate, a specific inhibitor of sulfate reduction, was added to methanogenic microcosms to suppress sulfate reduction. Two autoclaved controls were prepared for each condition. Live and killed sediments were spiked with MTBE to a final concentration of 20 mg liter1. After >200 days of incubation, complete loss of MTBE was observed in two of the methanogenic microcosms and two of the sulfate-reducing microcosms. TBA was detected in all four microcosms, indicating biological MTBE transformation. Methane was detected in the headspace of methanogenic microcosms, confirming methanogenesis as the terminal electron acceptor of the community when sulfate reduction was inhibited. For the sulfate-reducing conditions, a reduction of 0.20 mM sulfate was calculated for MTBE transformed (only utilization of the methyl group was assumed), according to Somsamak et al. (26). This amount of sulfate depletion could not be measured accurately from the large sulfate pool (20 mM). To verify sulfate reduction as the terminal electron-accepting process, 5 mM lactate was added to sediment in a separate experiment. The sulfate concentration decreased stoichiometrically with the amount of lactate utilized. No significant loss of sulfate was observed in the presence of sodium molybdate, indicating inhibition of sulfate reduction. The active microcosms were re-fed with 10 mg liter1 MTBE three more times before fresh medium was added to give a final volume of 100 ml (1:10 dilution). After a lengthy lag period of 75 to 120 days, all active enrichments utilized 20 mg liter1 MTBE within 20 days (data not shown). The lag period was significantly shorter upon respiking. Before the beginning of the carbon isotope fractionation experiment, the supernatant liquid of all four enrichments was discarded, and fresh medium was replenished to a final volume of 100 ml.
Experimental setup.
To examine the carbon isotope fractionation during anaerobic MTBE degradation, eight batch experiments were set up. Four serum bottles, each containing 100 ml of sulfate-reducing AK enrichment, were prepared as described above. Sodium molybdate (20 mM), a specific inhibitor of sulfate reduction, was added to two sulfate-reducing AK cultures. The two remaining cultures were kept under conditions promoting sulfate reduction. From the CC enrichment, two of the 100-ml cultures were prepared for each methanogenic and sulfate-reducing enrichment. Each culture had been enriched individually from separate CC sediment microcosms and had never been combined. Methanogenic and sulfate-reducing media were used as abiotic controls. Anaerobic MTBE stock solution was added to all live enrichments and abiotic controls to a final concentration of 25 to 30 mg liter1. All vials were shaken for 12 h and allowed to settle on the bench top for 30 min, and then liquid sample was taken for analysis of MTBE and TBA concentrations at day 0. For carbon isotope composition analysis, 7-ml samples were taken and added to 15-ml serum vials containing 0.6 g NaCl. The serum vials were precapped with gray Teflon-lined butyl rubber septa and crimped with aluminum seals. The samples were adjusted to pH 1 by the addition of 3N HCl. The cultures and abiotic controls were incubated in the dark, unshaken, at 37°C. The headspace MTBE concentrations of the cultures were monitored over time. After approximately 50% of MTBE utilization was observed, liquid samples were taken at selected time points for immediate MTBE and TBA analysis and for later carbon isotope composition analysis. These samples were stored at 20°C until analysis.
Analytical methods.
The concentration of MTBE was determined by a static headspace method. A 100-µl headspace sample was analyzed for MTBE with a Hewlett-Packard 5890 gas chromatograph (GC) equipped with a DB1 column (0.53 mm by 30 m; J&W Scientific, Folsom, CA) and a flame ionization detector with He as the carrier gas. The GC column temperature was first held at 35°C for 3 min, increased to 120°C at a rate of 5°C min1, and then held for 1 min. In addition, the concentrations of MTBE and TBA were confirmed by direct injection of 1 µl aqueous sample using the same instrument and temperature program. TBA was identified by comparison of its retention times to an authentic standard. For quantification, external aqueous standards of 3.0, 9.0, 15.0, and 30.0 mg liter1 for each compound were used. Detection limits were 0.5 mg liter1 for MTBE and 1.0 mg liter1 for TBA, respectively.
Stable isotope analyses were conducted at the Stable Isotope Laboratory of the UFZ Centre for Environmental Research, Leipzig-Halle, Germany. The system consisted of a GC (6890 series; Agilent Technology) coupled with a combustion interface (ThermoFinnigan GC-combustion III; ThermoFinnigan, Bremen, Germany) and a Finnigan MAT 252 isotope ratio mass spectrometer (ThermoFinnigan, Bremen, Germany). The organic substances in the CG effluent were oxidized to CO2 on a CuO-Ni-Pt catalyst held at 960°C. A Poraplot Q column (0.32 mm by 25 m; Chrompack, The Netherlands) was used for separation. Helium at a flow rate of 1.5 ml/min was used as carrier gas. The GC temperature program was held at 150°C for 15 min, increased to 220°C at a rate of 3°C min1, and then held for 10 min isothermally. Samples were injected in split mode with a split ratio 1:1 into a hot injector held at 220°C. Headspace injection volumes ranged from 0.2 to 1 ml, based on the concentration of MTBE determined previously. Each sample was analyzed at least in triplicate.
The direct headspace method had a detection limit of approximately 4 mg liter1 for MTBE. The carbon isotopic compositions (R) are reported as
notation in parts per thousand (indicated as per mille values) enrichments or depletions relative to the Vienna Pee Dee Belemnite standard of the International Atomic Energy Agency (2).
values of carbon were calculated as follows:
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FIG. 1. MTBE (solid symbols) and TBA (open symbols) concentrations during anaerobic MTBE biodegradation by sulfate-reducing Arthur Kill enrichment (replicate 1, circles; replicate 2, triangles), sulfate-reducing Arthur Kill enrichment with molybdate (squares), and abiotic controls (diamonds). The data for enrichment with molybdate and abiotic controls are the average of duplicates.
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FIG. 2. MTBE (solid symbols) and TBA (open symbols) concentrations during anaerobic MTBE biodegradation by sulfate-reducing (a) and methanogenic (b) Coronado Cay enrichment cultures (enrichment 1, circles; enrichment 2, triangles; abiotic control, squares). The data points of abiotic controls are the averages of duplicate cultures.
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-13C] of MTBE used as reference compound was 30.6
-13C] of all samples (enrichments and abiotic controls) collected on day 0 was 28.6
13C values was observed at 50% of MTBE degradation. The enrichment in the residual fraction was >30
-13C] values of MTBE in abiotic control vials collected on day 40 and day 60 (28.8
-13C] of abiotic control sample collected on day 190 (27.1
-13C] values of MTBE in abiotic controls at the beginning and the end of the experiment were minimal, the isotope ratios were not analyzed for other abiotic controls collected during the course of experiment.
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FIG. 3. [ -13C] value of residual MTBE versus the fraction of MTBE remaining in the sulfate-reducing Arthur Kill (circles) and methanogenic (triangles) and sulfate-reducing (squares) CC cultures. Duplicate enrichments are represented by solid and open symbols. The uncertainty of [ -13C] measurement is 0.4 ).
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) was based on the Rayleigh equation for a closed system (19, 23):
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t/1,000 + 1)/(
0/1,000 + 1). When ln Rt/R0 versus ln Ct/C0 was plotted, the isotopic enrichment factor (
) could be determined from the slope of the curve (b), with b = 1/
1 and
= 1,000 x b (Fig. 4). Linear regression was used to estimate the slope of each data set.
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FIG. 4. Double logarithmic plots according to Rayleigh equation of the isotopic composition versus the residual concentration of substrate: sulfate-reducing AK duplicate enrichments (a and b), sulfate-reducing CC enrichments (c and d), and methanogenic CC enrichments (e and f).
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) of each enrichment is listed in Table 1. The
values varied from 13.4|
View this table: [in a new window] |
TABLE 1. Isotopic enrichment factors ( ) for anaerobic biodegradation of MTBE
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-13C]) in relation to the fraction of MTBE remaining (Ct/C0) can be applied to approximate the extent of in situ MTBE degradation once the carbon isotope ratios of MTBE from contaminated sites are available. At 50% of anaerobic MTBE degradation, the residual MTBE fraction may become enriched in about 15
-13C] from environmental samples should undoubtedly demonstrate that >90% of the original amount of MTBE has been degraded (Ct/C0, <0.1). Since the carbon isotopic fractionation is conducted on residual MTBE, it does not provide any information about biodegradation of TBA, which is also reportedly persistent in the environment.
As shown in Table 1, the isotopic enrichment factors (
) estimated for the sulfate-reducing AK enrichment and the methanogenic and sulfate-reducing CC enrichments are almost identical. The
values obtained in this study are also similar to ones previously estimated from methanogenic AK cultures and under conditions when methanogenesis was inhibited (27). These
values are also similar to the values estimated by Kolhatkar et al. (16) and Kuder et al. (17), taking the uncertainty of previously reported isotope enrichment factors into account.
The evaluation of the isotope fractionation of enrichment cultures using various electron acceptors is very important for a reasonable application of isotope fractionation factors in field studies. To apply a representative fractionation factor (
or
), it is important to understand the specific isotope fractionation associated with a degradation pathway. The carbon isotope fractionation technique can be applied to calculate the extent of in situ MTBE degradation by using equation 1. In this case, an appropriate
value for the environmental conditions of the contaminated site is crucial in obtaining an accurate estimation. The similar magnitude of carbon isotope fractionation in all enrichments regardless of culture type or electron-accepting condition suggests that environmental condition may not significantly affect carbon isotope fractionation during anaerobic MTBE degradation. When all data from the current study and from our previous experiment (27) are combined, an
value with 95% confidence intervals of 14.4
± 0.7
is obtained from regression analysis (r2 = 0.97; 55 samples). This
value reflects the strong correlation and low variation. Since the
of 14.4
± 0.7
determined in our studies is more negative than that reported by Kolhatkar et al. (16) and demonstrates a greater degree of isotope fractionation, a higher
value is more sensitive to trace in situ biodegradation and less likely to overestimate the extent of in situ MTBE degradation. One should note that if the initial step of anaerobic MTBE degradation were governed by different mechanisms, this would be reflected in significantly different magnitude of carbon isotope fractionation and thus compromise the estimation. Our results, however, suggest that this is not the case.
Unlike other major environmental contaminants, there is very limited information available for anaerobic MTBE degradation. To date, none of the anaerobic MTBE-degrading cultures have been microbially characterized, and the mechanisms of anaerobic MTBE degradation have yet to be elucidated. Attempts to isolate the MTBE-utilizing organisms in pure culture and to study the microbial community using 16S rRNA gene analysis are under way. Nonetheless, the information currently available suggests that the initial step of degradation is similar among studied MTBE-degrading cultures. For instance, all enrichments produce TBA as an intermediate or end product of degradation, suggesting that cleavage of ether linkage is the initial step of MTBE degradation. Both the methanogenic and sulfidogenic enrichments continued to utilize MTBE even when the electron-accepting process of the community was inhibited, although retardation of overall utilization rate occurred. The finding suggests that MTBE degradation is not directly coupled to sulfate reduction or methanogenesis. It is thus possible that the same microorganisms are responsible for MTBE degradation in both methanogenic and sulfate-reducing communities. The possible hypothesis is that MTBE-degrading microorganisms cleave the ether linkage and produce a C-1 compound or acetate through acetogenic pathways (10), which consequently serve as a carbon source for the overall methanogenic or sulfate-reducing communities. Therefore, these MTBE-utilizing microorganisms could function in various types of environments and electron-accepting conditions. As the initial step of MTBE degradation was mechanistically independent from the terminal electron-accepting process as shown by the inhibitor studies, the overall terminal electron-accepting process and associated microbial community did not significantly influence carbon isotope fractionation. According to our current knowledge, isotope fractionation is dependent to a large extent on the biochemistry of the initial step in the degradation pathway. However, it is clear that also other factors, in addition to the biochemical mechanism, can effect isotope fractionation; it will be important to study more anaerobic cultures for a more complete view.
Further studies of MTBE-degrading microorganisms, including microbial community structure and function and biochemical reaction mechanisms of MTBE-degrading pure culture, are essential to understanding anaerobic MTBE degradation. Our results provide undeniable evidence of strong and almost identical carbon isotope fractionation during anaerobic MTBE degradation among different microbial communities, demonstrating the usefulness of this technique in demonstrating and estimating the extent of in situ MTBE degradation. Isotope fractionation factors of MTBE can be used to evaluate MTBE contaminated sites and contribute to the development of appropriate remediation measures.
P.S. was a recipient of a Royal Thai Government Graduate Fellowship. This work was supported in part by the New Jersey Water Resources Research Institute. Work at the UFZ was supported by the German Federal Ministry of Education and Research (grants 02WN0348 and 02WT0041).
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