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Applied and Environmental Microbiology, April 2006, p. 2876-2884, Vol. 72, No. 4
0099-2240/06/$08.00+0 doi:10.1128/AEM.72.4.2876-2884.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Ian R. Monk,1,2,
Sinéad C. Corr,1,2
Colin Hill,1,2* and
Cormac G. M. Gahan1,2,3
Alimentary Pharmabiotic Centre,1 Department of Microbiology,2 School of Pharmacy, University College Cork, Cork, Ireland3
Received 25 August 2005/ Accepted 16 January 2006
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Various reporter systems have been used to identify regulatory sequences and to monitor gene expression. Historically, bacterial promoters have been studied by insertion of random or defined chromosomal DNA fragments upstream of promoterless reporter genes, such as genes encoding chloramphenicol acetyltransferase (1, 27, 42), alanine racemase (7, 8), and different sugar hydrolases (19, 27, 32). These reporter systems are convenient tools for semiquantitative, plate-based assessment of promoter activities. However, more accurate quantification of promoter strength usually requires relatively laborious enzymatic assays, which typically involve bacterial cell disruption and addition of a substrate to drive the enzymatic reaction, followed by measurement of the optical density (27, 32).
Another group of reporter systems is based on the emission of light. Variants of green fluorescent protein from Aequorea victoria have been used to monitor bacterial promoter activity during infection of eukaryotic cell lines (14, 35). Unfortunately, naturally occurring fluorescence can lead to high background levels during in vitro and in vivo measurements. Alternative strategies for both gram-negative and gram-positive bacteria have involved the luciferase-encoding luxAB genes, typically derived from Vibrio fischeri, Vibrio harveyi, or Photorhabdus luminescens (25). Although the level of the background bioluminescence is extremely low compared to the level of endogenous background fluorescence, luxAB systems require addition of an exogenous aldehyde as a substrate in the light emission reaction (17, 28, 30, 33). This aldehyde requirement can be overcome by using the synthetic operon luxCDABE, as luxCDE encodes a fatty acid reductase complex involved in synthesis of the fatty aldehyde substrate for the bioluminescence reaction catalyzed by the luxAB-encoded luciferase (25). The luxCDABE system has been utilized in a noninvasive, real-time fashion for tagging and assessing promoter activities of several gram-negative bacteria, including Escherichia coli (6, 43, 45), Salmonella enterica serovar Typhimurium (3), Citrobacter rodentium (46), and Campylobacter jejuni (2). Moreover, after introduction of gram-positive ribosome binding sites and shuffling of the gene order to luxABCDE, the luciferase system also appeared to be functional in gram-positive bacteria (11, 34). Transposon mutagenesis strategies have been employed to integrate the luxABCDE system into the chromosome of several gram-positive bacteria, including Staphylococcus aureus (11), L. monocytogenes (18), and Streptococcus pneumoniae (12). These tagged pathogens could be monitored in intact animal models, which allowed temporal and spatial assessment of the infection processes.
Here we describe construction of a luciferase-based reporter system, pPL2lux. This vector is based on the listerial site-specific integration vector pPL2 (22) and the luxABCDE system (34). Derivatives of pPL2lux harboring the listerial secA and hlyA promoters translationally fused to luxABCDE were constructed and integrated into the L. monocytogenes chromosome. The strains that were constructed allowed us to assess the functionality of pPL2lux as a reporter system in three model systems used routinely in listerial research: growth in laboratory media, invasion assays with a Caco-2-derived cell line, and animal experiments using BALB/c mice. The experiments demonstrated the utility and advantages of pPL2lux as a real-time, noninvasive reporter system for quantitative assessment of listerial promoters.
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TABLE 1. Strains, plasmids, and primers used in this study and their relevant characteristics
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Construction of pPL2lux and derivatives.
Plasmid pPL2secA2-FLAG (23) was digested with PstI, and the 6.1-kb fragment containing the pPL2 backbone was self-ligated, yielding pPL2a. Except for the modified multiple cloning site, pPL2a is otherwise identical to pPL2 (22). The unique SwaI site present in the PSA integrase-encoding gene of pPL2a was removed by site-directed mutagenesis in a PCR using pPL2a as the template and primers IM101 and IM102. The resulting 0.94-kb amplicon was digested with SphI, and the 0.73-kb fragment was ligated into SphI-SwaI-digested pPL2a, yielding pPL2SwaI. Compared to parental plasmid pPL2a, the newly constructed plasmid had one point mutation in the SwaI site (introduced by the IM102 primer during the PCR), which did not change the protein sequence of the PSA integrase. Subsequently, pSB2025 (34) was digested with SalI and PstI, and the resulting 5.6-kb fragment harboring the synthetic luxABCDE operon was cloned into complementary digested pPL2SwaI, yielding pPL2luxSwaI+. Finally, the SwaI site in the luxC gene harbored by pPL2luxSwaI+ was removed using a site-directed mutagenesis approach essentially as described above to introduce a point mutation into the SwaI site, using pPL2luxSwaI+ as the template and primers IM103 and IM104, as well as exchange of the native and mutated fragment by cloning the SalI-digested amplicon into the SalI-SwaI-digested backbone of pPL2luxSwaI+. The resulting vector was designated pPL2lux (Fig. 1) and contains a unique SwaI restriction site that overlaps the start codon of luxA (introduced by the IM103 primer), which allows exact translational fusion of listerial promoters to the luxABCDE operon (see below).
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FIG. 1. Plasmid map of pPL2lux. The luxABCDE operon was derived from pSB2025 (34) with a blunt-end SwaI restriction site introduced overlapping the ATG start codon of luxA. Cloning of PCR-amplified promoter elements into the SalI and SwaI restriction sites allowed construction of exact translational fusions of listerial promoters to luxABCDE.
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RNA isolation.
Levels of luciferase and hemolysin transcription were determined in EGD-e::pPL2lux-PhlyA grown with or without 25 mM D-(+)-cellobiose (Calbiochem, San Diego, CA) or 0.2% activated charcoal (0.3 to 0.5 mm; Merck, Nottingham, United Kingdom). Full-grown LB medium cultures were diluted 50-fold in fresh medium and grown statically at 37°C. Growth was monitored by determining the optical density at 600 nm (OD600), and at the beginning of the stationary phase (OD600, 0.3) cells were harvested from 10 ml after addition of 40 ml of quench buffer (60% methanol, 66.7 mM HEPES [pH 6.5]; 40°C). Following quenching (31), the cells were immediately pelleted by centrifugation at 3,220 x g for 10 min, and the cell pellets were resuspended in 0.2 ml of ice-cold distilled H2O. The cell suspensions were added to ice-cold tubes containing MagNA Lyser green beads (Roche Diagnostics), 400 µl of acidified phenol (Sigma), 100 µl of chloroform (Sigma), 30 µl of 10% sodium dodecyl sulfate (Sigma), and 30 µl of 3 M sodium acetate (pH 5.2) (Merck). The cells were disrupted with three 40-s treatments in a MagNA Lyser (Roche Diagnostics) separated by 1 min on ice. After centrifugation, 100 µl of the aqueous phase was used for RNA isolation with QIAGEN RNeasy columns (Crawley, United Kingdom). After elution, 0.5 µl of protector RNase inhibitor was added to all RNA samples (Roche Diagnostics), and 1 µg of RNA was subjected to DNase I treatment according to the manufacturer's instructions (Ambion, Huntingdon, United Kingdom).
cDNA synthesis and reverse transcriptase PCR.
cDNA was synthesized in a 40-µl reaction mixture containing 0.2 nmol of random hexamer primer, 10 mM dithiothreitol, 1x Expand reverse transcriptase (RT) buffer, 50 U Expand reverse transcriptase (Roche Diagnostics, Mannheim, Germany), each deoxynucleoside triphosphate at a concentration of 0.25 mM, and 0.7 µg DNase I-treated RNA. Reverse transcription was initiated by 10 min at 30°C, followed by 45 min at 42°C and inactivation of the reverse transcriptase by incubation at 95°C for 2 min. Subsequently, 1 µl of the cDNA synthesized was used in PCR mixtures containing 1x PCR mixture (Promega) and 1 pmol of the 16S RNA (IM109-IM110), luxA (IM111-IM112), or hlyA (IM113-IM114) primer pair (Table 1).
Cell invasion assay.
C2Bbe1 cells (CRC-2102; American Type Culture Collection), a clone of the Caco-2 human adenocarcinoma cell line, were used for invasion assays. The cells were maintained in Dulbecco's modified Eagle's medium (DMEM) containing 4.5 g/liter Glutamax (Gibco Laboratories, Grand Island, NY), 10% fetal bovine serum (Gibco), 1% (vol/vol) nonessential amino acids (Gibco), 1% (vol/vol) penicillin-streptomycin (Gibco), and 0.01 mg/ml human transferrin (Calbiochem) at 37°C in a 5% CO2 atmosphere. For cell invasion assays, C2Bbe1 cells were trypsinized (Gibco), harvested by centrifugation at 400 x g for 8 min, and resuspended in 1 ml antibiotic-free DMEM containing 10% fetal bovine serum. Cells were seeded onto 24-well flat-bottom tissue culture plates (Sarstedt, Leicester, United Kingdom) at a concentration of 3 x 105 cells per well. The plates were incubated for 72 h at 37°C in a 5% CO2 atmosphere until confluence was reached. An overnight BHI medium culture of EGD-e::pPL2lux-PhlyA or EGD-e::pPL2lux was diluted 1:20 in fresh BHI medium and incubated until the OD600 was 1.0 (1 x 109 CFU/ml). Subsequently, bacterial cells were washed twice in DMEM and added at a multiplicity of infection of 100:1, and the plates were incubated at 37°C in a 5% CO2 atmosphere. At several times gentamicin was added to a final concentration of 100 µg/ml, and the cells were incubated for 30 min (21). Subsequently, the cells were washed three times with phosphate-buffered saline (PBS), and the levels of bioluminescence were determined using a Xenogen IVIS 100 system (Xenogen, Alameda, CA). After this monolayers were lysed with 1 ml of ice-cold distilled H2O, and serial dilutions were plated on BHI agar to assess the number of viable intracellular bacteria.
Animal experiments.
Overnight cultures of either L. monocytogenes EGD-e:: pPL2lux-PhlyA or L. monocytogenes EGD-e::pPL2lux were pelleted by centrifugation (7,000 x g for 5 min), washed with PBS, and used to inoculate 8- to 12-week-old BALB/c mice intraperitoneally with 2 x 106 CFU in 200 µl of PBS. Three days after infection, the mice were sacrificed by cervical dislocation, and individual organs were examined for bioluminescence using a Xenogen IVIS 100 system. Organs were then homogenized in PBS, and serial dilutions were plated onto BHI agar, which was followed by overnight incubation at 37°C. The resulting colonies were used to calculate the number of bacterial cells per organ.
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To demonstrate the functionality of the luciferase reporter system in L. monocytogenes, the expression profiles of hlyA and secA were assessed. The latter gene encodes SecA, which is essential in L. monocytogenes as it is required for the initial binding of preproteins to the inner membrane and their subsequent translocation across this structure (23). Hence, this gene should be expressed in all growth phases and was used primarily as a positive control. hlyA, encoding hemolysin, plays an important role during listerial escape from the phagosomal compartment and intracytoplasmic growth (15, 44). The original vector, pPL2lux, and its derivatives, pPL2lux-PsecA and pPL2lux-PhlyA, were constructed and integrated into the chromosome of L. monocytogenes EGD-e as described in Materials and Methods.
The stability of the integrated pPL2lux derivatives in the absence of antibiotic selection pressure was evaluated. Cultures of L. monocytogenes EGD-e::pPL2lux, EGD-e::pPL2lux-PsecA, and EGD-e::pPL2lux-PhlyA were grown for 50 generations in BHI medium without antibiotic selection, dilutions of the cultures were plated, and the presence of the integrated plasmids in the resulting colonies was assessed by scoring for the chloramphenicol resistance encoded by the pPL2 backbone. All 100 colonies tested for each of the three strains were chloramphenicol resistant after 50 generations of growth (data not shown), indicating that the integrated plasmids were stably maintained without antibiotic selection pressure. This high level of stability allowed use of the luciferase reporter system in experiments in which antibiotic selection pressure could not be maintained, such as cell invasion assays and animal experiments (see below).
Overnight cultures of the constructed strains were diluted 1:50 in LB medium buffered at pH 7.4, and growth and bioluminescence were monitored over time (Fig. 2). Notably, relatively low levels of hemolysin-coupled bioluminescence were observed in our initial experiments using the luciferase reporter system and unbuffered BHI and LB media. In contrast, higher levels of bioluminescence were observed in BHI and LB media buffered at pH 7.4; the levels of expression in LB medium were the highest, while the secA transcription profiles appeared to be similar in the unbuffered and buffered LB and BHI media (data not shown). The growth rates of EGD-e::pPL2lux-PsecA and EGD-e::pPL2lux-PhlyA in the different media were not affected compared to the growth rate of EGD-e::pPL2lux (data not shown). Apparently, luciferase expression at the levels reached during the experiments described here does not influence the growth rate of L. monocytogenes. No bioluminescence was detected at any time for the negative control strain EGD-e::pPL2lux, indicating that there was no background signal (data not shown). For strain EGD-e::pPL2lux-PsecA, bioluminescence was detected throughout the growth curve, as expected for this essential system (Fig. 2). However, bioluminescence declined during the late logarithmic phase of growth and decreased considerably after the strain entered the stationary phase, until it was eventually undetectable. In contrast, bioluminescence was not present in EGD-e::pPL2lux-PhlyA in the early logarithmic growth phase and was detected only from the mid-logarithmic growth phase onward (Fig. 2). Higher levels of expression were observed at the end of the logarithmic phase and upon entry into the stationary phase. Although the hemolysin levels fluctuated during the stationary phase, equally high levels of expression were detected after 24 h of growth compared to the levels at the beginning of the stationary phase (Fig. 2). The bioluminescence profiles for EGD-e::pPL2lux-PsecA and EGD-e::pPL2lux-PhlyA differed significantly throughout the different growth phases, suggesting that differential expression can be monitored using the luciferase reporter system.
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FIG. 2. Hemolysin expression profiles during growth at 37°C in LB medium buffered at pH 7.4. The triangles and diamonds indicate the average growth of quadruplicate cultures and the gray and black bars indicate the average luciferase expression profiles for EGD-e::pPL2lux-PsecA and EGD-e::pPL2lux-PhlyA, respectively. BLC, bioluminescence counts; OD600nm, optical density at 600 nm. The data are representative of the data from three independent experiments. At times 1, 2, and 3, samples were taken from the cultures for RNA isolation. Subsequently, luciferase transcript levels were assessed by RT-PCR analysis (inset).
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Previous studies have demonstrated that hlyA transcription is induced in the presence of activated charcoal and is repressed by cellobiose (10, 26, 37). To further investigate the potential of pPL2lux as a quantitative reporter system, EGD-e::pPL2lux-PhlyA was grown in media with and without added cellobiose or activated charcoal. At the beginning of stationary phase the levels of bioluminescence were determined, and the results revealed that addition of cellobiose and charcoal to the medium resulted in a 16-fold decrease and a 28-fold increase, respectively, in the levels of bioluminescence compared to growth in the control medium (Fig. 3A). Despite the fact that the levels of bioluminescence in LB medium containing activated charcoal appeared to be 448-fold higher than the levels in LB medium containing cellobiose, both levels could be conveniently measured, indicating the suitability of the luciferase reporter system for assessing levels of hemolysin expression in a wide dynamic range. Simultaneously, RNA was isolated from the cultures, and after cDNA synthesis the correlation between bioluminescence and luxA or hlyA levels was evaluated by PCR analysis. Control PCRs with cDNA derived from the cultures were performed with 16S RNA primers (Table 1), and the results confirmed that the cDNA concentrations were comparable in all samples (Fig. 3B). The relatively high intensity of the amplicon obtained using the luxA primers (Table 1) and cDNA derived from the culture to which activated charcoal had been added indicates that the levels of luxA mRNA were significantly higher than the levels in the control culture. Moreover, the intensity of the amplicon from the culture grown in LB medium containing cellobiose was significantly lower, indicating that the levels of luxA mRNA were decreased in the presence of cellobiose. These experiments revealed that the levels of bioluminescence obtained using the pPL2lux reporter system strongly correlated with the levels of luxA mRNA in the same cultures. Using the same cDNA samples with primers specific for hlyA (Table 1), very similar relative expression profiles were obtained, namely, decreased and increased levels of hlyA mRNA in the cultures containing cellobiose and charcoal, respectively (Fig. 3B). From these data, we concluded that at least in this instance, measuring bioluminescence provides an accurate depiction of transcription of the single-copy, chromosomally located luxABCDE operon, which in turn correctly reflects the transcription profile of the native promoter in its normal chromosomal locus. Taken together, the experiments described above demonstrate that pPL2lux can be used effectively as a quantitative reporter system for real-time, noninvasive detection of promoter activities during in vitro growth of L. monocytogenes.
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FIG. 3. Correlation between bioluminescence and mRNA levels. EGDe::pPL2lux-PhlyA was grown in LB medium, LB medium containing 0.2% activated charcoal (LBAC), or LB medium containing 25 mM cellobiose (LBcell). Upon entry into the stationary phase, 1-ml portions of the cultures were imaged using the IVIS 100 system (A), and cDNA was synthesized from RNA extracted from 10-ml portions of the cultures, which was followed by PCR analysis to assess levels of 16S RNA, luxA, and hlyA transcription (B). The images in panel A were obtained using an IVIS 100 system with 5 min of exposure and a binning value of 8. The color bar indicates the bioluminescence signal intensity (in photons s1 cm2). Fold induction indicates the levels of bioluminescence relative to the levels observed in LB medium.
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FIG. 4. Hemolysin expression during cell invasion. EGDe::pPL2lux-PhlyA was used to infect monolayers of C2Bbe1 cells, and bioluminescence was monitored 0, 30, 60, and 120 min postinfection. The images were obtained using an IVIS 100 system with 5 min of exposure and a binning value of 8. BLC, bioluminescence counts (in photons s1). The color bar indicates bioluminescence signal intensity (in photons s1 cm2). ND, not detectable (bioluminescence counts, <1 x 104 photons s1). The values for bioluminescence counts and CFU are the means ± standard deviations from triplicate wells. The data are representative of the data from three independent experiments.
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FIG. 5. In vivo analysis of L. monocytogenes hemolysin expression and organ-specific colonization in BALB/c mice. Two mice were inoculated with 2 x 106 bacteria via the intraperitoneal route using either EGD-e::pPL2lux (Control) or EGD-e::pPL2lux-PhlyA (hlyA). Three days postinfection, the mice were euthanized, and bioluminescent imaging was performed for 5 min at a binning value of 4 using an IVIS 100 system. BLC, bioluminescence counts (in photons s1). The color bar indicates the bioluminescence signal intensity (in photons s1 cm2). Subsequently, the numbers of bacterial CFU were determined for the individual organs. Results for the left and right kidneys were combined to obtain total BLC and CFU values. ND, not detectable (bioluminescence counts, <1 x 104 photons s1). The data are representative of the data from three independent experiments.
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A previous study in which ß-glucuronidase was used as a reporter system in L. monocytogenes revealed that hemolysin expression could be conveniently detected in LB broth buffered at pH 7.4 1 h into the stationary phase (5). Similar conditions were used here for the luciferase reporter system, and our results corroborated the previous findings. In addition, our experiments revealed that hemolysin expression is initiated during the mid-log phase in LB broth buffered at pH 7.4 and is still detectable after prolonged incubation in the stationary phase. Previously, the levels of bioluminescence from luxABCDE systems have been reported to decrease in the stationary phase in several gram-positive bacteria, including Streptococcus pneumoniae (12), Lactobacillus casei (28) and L. monocytogenes (18). To our knowledge, the hemolysin-coupled luciferase expression profiles described here are the first examples of relatively high levels of luciferase expression in a gram-positive bacterium in the stationary phase and thus overcome a final technical hurdle for the use of luciferase reporter systems to monitor bacterial gene expression in broth.
A luxAB-based luciferase reporter system (28) and (quantitative) RT-PCR strategies (4, 8, 28, 38, 40) have been employed previously to monitor in situ gene expression in bacteria during residence in their hosts. Both approaches have been applied only to the murine gut and require extensive homogenization of this organ prior to analysis. In contrast, hemolysin expression profiles could be obtained for intact organs using the luciferase reporter system. Hence, the system described here has great potential for direct comparison of different bacterial promoter activities in intact organs. However, organ-specific variation in quenching of bioluminescence signals does not allow quantitative interorgan comparison for each specific promoter element. Such an analysis would require homogenization of the organs prior to measurement of bioluminescence. Although the quenching differences mentioned above prevent direct correlation of the in vitro and in vivo hlyA promoter strengths observed in our experiments, it is remarkable that the highest relative levels of luciferase found per CFU in vitro are more than 100-fold lower than the levels found in C2 cells and the organs of mice (data not shown). Therefore, our findings further enhance previous experimental suggestions that hemolysin expression might be dramatically elevated in vivo (37).
Overall, the luciferase reporter system described here is a valuable addition to the genetic toolbox available for L. monocytogenes, as it can be employed for in situ real-time investigation of listerial promoter activities after infection of mice. Currently, the luciferase reporter system is being exploited in our laboratory to obtain and compare quantitative, organ-specific expression profiles for the majority of L. monocytogenes virulence genes and regulators, including cwhA, prfA, yycF, inlA, and actA. In parallel, the expression profiles of several household genes, such as atpI and ftsA, are being obtained, which allows normalization of the expression profiles found for the virulence genes (I. R. Monk, P. A. Bron, P. G. Casey, C. G. M. Gahan, and C. Hill, unpublished data). The wealth of in situ information about spatial and temporal gene expression that will become available from this type of animal experiment is expected to contribute significantly to our understanding of the molecular mechanisms involved in the in situ behavior of L. monocytogenes during infection.
This research was funded by the Irish Government under the national development plan (2000-2006) and by Science Foundation Ireland.
P.A.B. and I.R.M. contributed equally to this work. ![]()
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B regulates stress response and virulence functions. J. Bacteriol. 185:5722-5734.
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