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Applied and Environmental Microbiology, May 2006, p. 3259-3267, Vol. 72, No. 5
0099-2240/06/$08.00+0 doi:10.1128/AEM.72.5.3259-3267.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Aspergillus Unit,1 Electron Microscopy Platform, Institut Pasteur, 25-28 Rue du Dr Roux, 75724 Paris Cedex 15,2 Department of Microbiology and Immunology, Georgetown University Medical Center, Washington, D.C. 200073
Received 22 August 2005/ Accepted 24 February 2006
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This study investigates Ecm33p, a GPI-anchored protein that was originally identified in S. cerevisiae in a screen of Tn3 transposon-mutagenized cells for altered sensitivity to calcofluor white (CFW) (19). Although the biochemical function of this protein is not known, many phenotypes of the ecm33 (YBR078w) mutant suggest a putative role of ECM33 in cell wall assembly. Moreover, ECM33 belongs to the S. cerevisiae SPS2 and Schizosaccharomyces pombe meu10 families, which play essential roles in the sporulation of these two yeast species, in particular, the formation of the ascospore cell wall (15, 37). These data have led us to investigate the role of the ECM33 ortholog in A. fumigatus. In this report, we describe the disruption of the ECM33 gene in A. fumigatus (AfECM33) and the phenotype of the mutant. We show that mutation of the AfECM33 gene results in a conidium phenotype that is associated with a differential sensitivity of the mutant to phagocytes.
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(Biolabs). Cells were grown at 37°C in LB medium (2.5% Luria broth base) supplemented with 100 µg/ml ampicillin if required. The following plasmids were used: pCR2.1 vector (Topo TA Cloning kit; Invitrogen, Carlsbad, CA) to clone PCR products, pUC18 plasmid (Invitrogen) to clone AfECM33, and pAN7.1 and pAN8.1 plasmids (22, 31) to disrupt the AfECM33 gene and complement the Afecm33 mutant.
Oligonucleotides, cloning procedures, and DNA manipulations.
DNA manipulations were done following an established protocol (33). The sequences of the oligonucleotides used in this study are listed in Table 1. Genomic DNAs of A. fumigatus transformants were prepared according to the method of Girardin et al. (12). For PCR experiments, the samples in a 50-µl reaction volume containing 20 µM of each deoxynucleoside triphosphate, 50 pmol of each primer, 100 ng of cDNA or genomic DNA, and 1 unit of Taq DNA polymerase (Amersham Pharmacia Biotech) were subjected to 30 cycles of amplification consisting of the following steps: 5 min of denaturation at 95°C, 30 cycles of amplification (1 min of denaturation at 95°C, 1 min of annealing at 50°C or 55°C depending on the primer pair used, and 1 min of elongation at 72°C), and 5 min of elongation at 72°C.
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TABLE 1. Oligonucleotides used in this study
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gt11 (Invitrogen Corp.) A. fumigatus cDNA library (a kind gift from M. Monod, CHUV, Lausanne, Switzerland) by PCR using primers deduced from the genomic DNA sequence (ECM33-c/ECM33-e, ECM33-l/ECM33-i, and ECM33-m/ECM33-i). This analysis showed that the position of the ECM33-b primer was outside the open reading frame, due to a wrong annotation in the GTC database.
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FIG. 1. Disruption of the AfECM33 gene (black arrow) by double-crossover events. (a) Restriction maps of the AfECM33 deletion constructs and cloning steps during AfECM33 gene deletion. Restriction enzyme abbreviation: B (BamHI), N (NcoI), E (EcoRI), X (XbaI), H (HindIII), and Bg (BglII). See Materials and Methods for the amplification of PCR hi and jk fragments, and ab and hi probes. (b) Restriction map after the integration of the HPH gene marker (gray box) at the AfECM33 locus.
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Transformation of A. fumigatus using pUC18/Afecm33 was performed using the protoplast procedure previously described (25). Protoplasts were obtained after treatment with Glucanex enzyme (Novo Nordisk Ferment Ltd., Switzerland) for 2.5 h at 30°C with gentle agitation. After an overnight expression of the HPH gene, the transformants were selected on MM supplemented with 1 M sucrose and 200 µg/ml hygromycin B.
Transformants (127) were first tested by PCR to verify the integration of the HPH marker gene at the AfECM33 locus by using the oligonucleotides ECM33-c and ECM33-e (Fig. 1a), and then genomic DNAs of the PCR-selected transformants were digested by BamHI, HindIII, and NcoI for Southern blotting using the hi PCR fragment to confirm the integration of HPH at the right locus. The presence or absence of AfEcm33p was verified by Western blotting using an anti-AfEcm33p hyperimmune rabbit antiserum. Anti-AfEcm33p hyperimmune rabbit antiserum was produced by Millgen (Toulouse, France) following immunization with the peptide CKAAEPNPTTKDGSSG coupled by glutaraldehyde treatment to thyroglobulin. An increase in specific antibodies was determined by Western blotting; sufficient titers of antibody were obtained after 3 months of immunization. For Western blotting experiments, mycelial extracts were obtained in the following way: after 24 h of growth in Sabouraud medium, the mycelium was disrupted in 0.2 M Tris HCl, pH 8.0, 20 mM EDTA, 1 mM phenylmethylsulfonyl fluoride buffer in a CO2-cooled MSK Braun homogenizer using 0.5-mm glass beads. After verification of cell breakage under light microscopy, the mycelial slurry was centrifuged at 4,000 x g, leading to a 4,000 x g intracellular (IC) supernatant and cell wall (CW) pellet. Both fractions were tested by Western blotting after extensive washing of the pellet.
To complement the Afecm33 mutant, the cosmid 47H3 (containing the AfECM33 gene) and the plasmid pAN8.1 (containing the phleomycin resistance marker) were used to cotransform the Afecm33 mutant by the protoplast procedure described above. After overnight expression of the phleomycin gene, the transformants were selected on MM supplemented with 1 M sucrose with 40 µg/ml phleomycin. Restoration of the wild-type conidial phenotype was searched for among the transformants, and the ectopic integration of an intact copy of the ECM33 gene was verified by Southern blotting as described above.
Analysis of the mutant phenotype. (i) Conidial germination.
A. fumigatus conidia of the WT, Afecm33 mutant, and ecm33::ECM33 revertant strains, grown at room temperature for 6 days on 2% malt agar slants, were recovered in 0.05% Tween 20 water. Homogeneous conidial suspensions of each strain were collected following filtration through a 40-µm-pore-size filter (Falcon) and then through sterile filter paper (MN617; Macherey-Nagel, Germany). If necessary, conidia were labeled with fluorescein isothiocyanate (FITC) (Sigma) or Texas Red (Texas Red-X; succinimidylester mixed isomers; Molecular Probes) (17, 28): freshly harvested conidia (2 x 107 conidia/10 ml of 0.1 M Na carbonate buffer, pH 10.2) were incubated with the fluorescent dye at a final concentration of 0.1 mg/ml at 37°C for 45 min and washed by centrifugation three times in 0.1% Tween 20-PBS. Five microliters of a conidial suspension at 106/ml was spotted on Sabouraud agar and incubated at 37°C. The percent germination was assessed microscopically every hour for 14 h. If needed, the lengths of germ tubes were measured under a light microscope (DL; Leica) coupled to a cool-snap Cf monochrome camera (Photometrics; Roper Scientific, France). Images were obtained with Metavue software (Universal Imaging Corporation, Dowingstown, PA). Conidia of different ages from slants stored for up to 2 months either under normal aeration conditions or in the absence of aeration were tested. For that purpose, tubes were inverted and partly dipped into paraffin oil to avoid the entrance of air.
(ii) Analysis of the cell wall phenotype.
To measure the amount of chitin in the conidial cell wall, conidia were disrupted in water in a CO2-cooled MSK Braun homogenizer using 0.5-mm glass beads. After verification of cell breakage under light microscopy, the mycelial slurry was centrifuged at 4,000 x g, and the cell wall pellet was extensively washed with 0.5 M NaCl and water and freeze-dried. Total hexosamine was measured after hydrolysis with 8 N HCl for 4 h at 100°C (11). The hexosamine content was estimated as the amount of chitin per conidium. To visualize the presence of chitin in the cell wall, A. fumigatus conidia of wild-type and Afecm33 strains were labeled with calcofluor white at a final concentration of 100 µg/ml. Conidia were observed with a Leica DL fluorescence microscope as described above.
To test the susceptibility of the ecm33 mutant to various cell wall inhibitors, 6 x 103 6-day-old conidia were inoculated in 200 µl 1% yeast extract medium containing twofold dilutions of the cell wall-perturbing agents Congo Red (0 to 1 mg/ml), CFW (0 to 1 mg/ml), nikkomycin (0 to 500 µg/ml), caspofungin (0 to 100 µg/ml), mulundocandin (0 to 200 µg/ml), Lilly 303366 (0 to 200 µg/ml), glucanex (0 to 5 mg/ml), and polyoxin (0 to 250 µg/ml) in enzyme-linked immunosorbent assay plates. The plates were incubated at 37°C for 48 h, and the MICs were determined by quantification of the growth estimated as the optical density at 600-nm absorbance in a microtiter plate reader.
(iii) Conidial cell wall ultrastructure.
Conidia were processed for transmission electron microscopy as previously described (17, 28). Briefly, the conidia were fixed overnight at 4°C with 2.5% glutaraldehyde in 0.1 M phosphate buffer and washed in the same buffer. Postfixation (30 min) in aqueous 1% osmium tetraoxide (OsO4) in 0.1 M cacodylate buffer, pH 7.4, was followed by several washes (5 min each) in sodium acetate buffer (50 mM, pH 5, at 0 to 2°C). Dehydration in an ethanol gradient preceded infiltration in Epon resin. Ultrathin (50- to 60-nm) sections were stained with 4% uranyl acetate followed by lead citrate. The sections were examined using a Jeol GEM-1010 transmission electron microscope.
(iv) Sensitivity of the Afecm33 mutant to phagocytes.
The susceptibility of the conidia to alveolar macrophages (AM) and polymorphonuclear phagocytes (PMNs) and of the mycelium to PMNs was evaluated under different experimental setups either in vitro or in vivo.
(v) Killing of swollen conidia by AM of the MH-S cell line.
To obtain swollen conidia, FITC conidia were incubated in RPMI medium (RPMI 1640 Glutamax medium; Gibco, Invitrogen Corp.) supplemented with 10 mM sodium pyruvate, 1 mM HEPES, 50 U/ml penicillin (Gibco) and streptomycin (Gibco), and 10% heat-inactivated fetal bovine serum (FBS) (Gibco, Invitrogen Corp.) for 3 h at 37°C in an atmosphere of 5% CO2. AM from the MH-S murine cell line were cultured in RPMI plus 10% FBS medium at 37°C under 5% CO2. The MH-S cells were plated 24 h prior to each experiment. For the killing assay, 5 x 104 FITC-labeled swollen conidia were added to 5 x 105 MH-S cells (ratio, 1:10) and incubated at 37°C in RPMI plus 10% FBS medium for 6 h. After disruption of the cells by water, the conidia were incubated overnight on Sabouraud agar at 37°C. Conidial killing was estimated as a percentage of germinated conidia counted under a light fluorescence Leica DL microscope [(number of nongerminated conidia/total number of conidia phagocytosed by the macrophages) x 100] (17, 28).
(vi) Killing of resting conidia by mouse AM.
FITC-labeled conidia were used to infect immunocompetent OF1 mice (Janvier, France) anesthetized with an intramuscular injection of 0.1 ml of a solution containing 10 µg/ml ketamine (Mérial, France) and 2 µg/ml xylazine (Bayer Leverkusen, Germany) per mouse. For each mouse, 25 µl (107 conidia) of 0.1% Tween 20-PBS FITC-labeled conidial suspension was inoculated intranasally, using an automatic pipetting device. After 24 h, AM were harvested from the mouse lungs with 15 ml of ice-cold Ca2+- and Mg2+-free PBS (Gibco, Invitrogen Corp.) through an 18-gauge plastic catheter inserted into the trachea after the mouse was killed with 100 µl of pentobarbitol. The cells were separated from the lavage fluid by centrifugation at 400 x g for 8 min at 4°C, and conidial germination was assessed as described above.
(vii) Killing of conidia by human neutrophils.
Human PMNs were isolated from the peripheral blood of healthy volunteers using dextran sedimentation and centrifugation through Lymphocyte Separation Medium (Mediatech Cellgro, Virginia). The percentage of neutrophils was estimated to be greater that 90%. The cells were suspended in RPMI 1640 medium, and 0.2 ml of medium containing 5 x 105 PMNs/ml and 5 x 104 conidia of A. fumigatus/ml was incubated at 37°C for 6 h. The cells were then lysed with an aqueous solution containing 0.5% Tween 20 and homogenized before being plated on petri dishes containing 2% malt agar. CFU were counted, and the results were estimated as the percentage of killing according to the following formula: (number of CFU conidia at zero time [T0] number of CFU conidia after 6 h of incubation with PMN/number of CFU conidia at T0) x 100.
(viii) Killing of mycelium by human neutrophils.
Human PMNs were isolated as described above and suspended in RPMI 1640 medium. A conidial suspension of A. fumigatus was adjusted to 2.5 x 104/ml in RPMI 1640, and the suspension was dispensed into 96-well microtiter plates and incubated for 20 h at 37°C (0.2 ml/well) in order for conidia to germinate. The plates were centrifuged in situ, the supernatants were aspirated, and 0.2 ml of PMNs (2.5 x 105/ml) was added to each well containing germinated conidia. One control lacking PMNs was also used. In another control, plates without PMNs were incubated with H2O2 (0.25 to 2.5 mM). After 24 h at 37°C under CO2, the plates were centrifuged, the supernatants were aspirated and discarded, and deionized water was added to lyse the neutrophils. This step was repeated. Then, 0.2 ml of Na-methoxy-nitro-sulfophenyl-tetrazolium-carboxanilide (XTT) at 1 mg/ml in 1% phenazine methosulfate (Tox2 kit; Sigma) per well was added, and the cultures were incubated for 20 h at 37°C. Absorption at 450 nm was determined with a 96-well plate reader. Readings at 690 nm (the reference wavelength) for each well were also recorded and subtracted from the absorbance at 490 nm. The percent growth inhibition for each strain was calculated using the formula (A450 of fungi incubated without PMNs A450 of fungi incubated with PMNs)/A450 of fungi incubated without PMNs x 100.
(ix) Mycelial growth in the lungs of immunocompromised mice.
Previous studies have shown that the best comparison of the pathobiologies of a mutant and a parental strain occurs when the mutant and parental strains are inoculated together into the same mouse immunosuppressed by an intraperitoneal injection of 25 mg of cortisone acetate (Sigma) at day 4 and day 0 before intranasal inoculation (day 0) (1). On day 0, 25 µl of a 0.05% Tween 20 aqueous solution containing 5 x 106 Texas Red-labeled wild-type conidia and 5 x 106 FITC-labeled mutant conidia was inoculated intranasally into an OF1 mouse. Bronchoalveolar lavages were performed 10 h after conidial inhalation, as described previously (28). After centrifugation (at room temperature for 10 min at 1,400 rpm), germ tubes of the two strains were differentially identified under a light fluorescence Leica DL microscope, and their lengths were measured.
Statistical analysis.
All experiments were repeated at least three times, and the statistical significance of the results was determined by one- or two-way variance analysis using JMP5 of SAS (Cary, NC). The results were expressed as means ± standard error values.
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ECM33 was found in all yeast and mold fungal genomes sequenced to date (S. cerevisiae, S. pombe, C. albicans, Candida glabrata, Magnaporthe grisea, Neurospora crassa, and Fusarium graminearum, as well as other Aspergillus spp.) with different numbers of orthologs per species. In Fig. 2, a comparative tree shows the sequences of A. fumigatus ECM33 with six other yeast ECM33 orthologs (four in S. cerevisiae and two in S. pombe) that have been functionally analyzed. In S. cerevisiae, Ecm33p belongs to a family which contains four members that are separated into two clusters (Sps2p and YCL048wp; Pst1p and Ecm33p) and that are associated with a sporulation function, at least for the first cluster (A. M. Neiman, personal communication; 6). The two orthologs identified and studied in S. pombe (meu10 and SPAC23H4.19) are also involved in ascospore formation (37). The sizes of the Ecm33p proteins in yeast and molds were similar, approximately 400 amino acids. The levels of identity between proteins of the different species varied from 23% to 57%, with the highest similarity found for Ecm33p and Pst1p of S. cerevisiae. A. fumigatus Ecm33p was more closely related to S. pombe Meu10p and SPAC23H4.19p than to the S. cerevisiae orthologs, a common observation in all sequence comparisons of these three species. However, the insulin-like domain that was considered to be important functionally in S. pombe (37) was not found in A. fumigatus.
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FIG. 2. Dendrogram composed of A. fumigatus Ecm33p and six yeast orthologs: the four members of the SPS2 family in S. cerevisiae (Sps2p, Pst1p, Ecm33p, and YCL048wp) and the two homologs (Meu10p and SPAC23H4.19p) of S. pombe.
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FIG. 3. Southern and Western blot analyses of the AfECM33 gene and protein. (a) Southern blot of the Afecm33 mutant (m) and WT strains. Genomic DNA of each strain was digested with BamHI, HindIII, or NcoI and hybridized with the radioactively labeled hi probe (see Fig. 1 for the identification of the probe). (b) Western blots of the IC and CW fractions obtained after 4,000 x g centrifugation from the WT strain and the Afecm33 mutant (m) after incubation of electrotransferred proteins with an anti-AfEcm33p hyperimmune antiserum.
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FIG. 4. Light microscopy of 6-day-old A. fumigatus WT and Afecm33 mutant (m) conidia under phase-contrast (a) or fluorescence imaging microscopy after labeling of the conidia with CFW (b). Note that the conidia of the mutant are larger, less refractile (a), and more labeled by CFW (b) than the conidia of the wild-type strain. Bars, 2 µm.
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FIG. 5. Measurements of the resting (T = 0) and swollen (after 5 h 30 min of incubation at 37°C in Sabouraud medium) (T = 5h30) conidia of the parental strain (WT), the ecm33 mutant ( ), and the ecm33::ECM33 revertant (R). Means ± standard errors are indicated. The asterisk indicates that the conidium diameter of the Afecm33 mutant is significantly different from the diameters of the conidia of the parental and revertant strains.
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FIG. 6. Electron microscopy images of 6-day-old conidia from A. fumigatus WT and the Afecm33 mutant (m1 to m3) showing the incomplete separation of the conidia apparently caused by melanin bridging between adjacent conidia. The conidia of the revertant looked like those of the wild-type strain (data not shown). Bars, 2 µm.
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FIG. 7. Sensitivity of the WT, the ecm33 mutant ( ), and the ecm33::ECM33 revertant (R) strains to phagocytes. Killing of resting conidia (Co) and mycelium (Myc) by mouse AM and human PMNs was estimated as percent germination and percent mycelial-growth inhibition using the XTT assay. Values are expressed as means plus standard errors. The asterisks indicate that the values obtained with the ecm33 mutant were significantly different from the ones obtained with the parental and revertant strains.
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ECM33 was initially identified as a calcofluor white-sensitive mutant during a screen of a transposon-mutagenized yeast library (19). The ecm33 mutant had other phenotypes often encountered after disruptions of cell wall-encoding genes that result in a weakened cell wall, among which are (i) a reduction in the mannose/glucose ratio; (ii) a hypersensitivity to zymolyase, hygromycin, and caffeine; (iii) an increased release of ß1-3/1-6 glucans in the culture medium; (iv) an increased phosphorylation of Slt2p, indicating the activation of the cell wall integrity pathway; and (v) disorganization of the mannoprotein outer layer and defects in N-glycosylation (9, 19, 24). These data would suggest that Ecm33p is directly involved in cell wall biosynthesis. Other phenotypes of the ecm33 mutant, such as the temperature sensitivity of the growth phenotype (36) or hypersensitivity to oxidative stress (16), suggest only a membrane defect. Meu10p from S. pombe and Pst1p and Ecm33p of S. cerevisiae have a domain that is homologous to the mammalian insulin receptor, suggesting that Ecm33p and its homologs could function as a receptor to sense environmental information, such as the nutrient conditions of the medium. Moreover, the absence of any of the ECM33 sequences in the CAZYME database (http://afmb.cnrs-mrs.fr/CAZY/) suggests that this protein does not enzymatically modify a glycosylated molecule (B. Henrissat, personal communication). In C. albicans, deletion of ECM33p impacts cell wall integrity and morphogenesis (20). Mutant yeasts are more rounded and bigger than the wild-type yeasts. They exhibit cell wall defects and a marked tendency to flocculate. Moreover, the yeast-to-hypha transition is inhibited only in solid media, not in liquid media. These results are very reminiscent of those obtained with A. fumigatus with higher cell volumes of the conidia and variability of the mycelial phenotype based on the environmental growth conditions. Because the biochemical function of Ecm33p is unknown in A. fumigatus and other fungi, it is impossible to say that the differences in the cell walls of the Ecm33p mutants are due to a direct effect of the gene deletion rather than a secondary downstream event resulting from the perturbation of sensing mechanisms.
The Ecm33p proteins of A. fumigatus, Candida albicans, and S. cerevisiae are GPI anchored (4, 6, 9, 10, 13, 24, 35). Ecm33p of S. cerevisiae has a dibasic KK motif upstream from the GPI cleavage site that is a signature sequence of proteins that are localized at the membrane. Anchoring to the plasma membrane is essential for Ecm33p function: replacement of the G406 residue (to which GPI binds) with another amino acid residue leads to the loss of a complementation function of the temperature-sensitive phenotype (36). The GPI anchoring of the Ecm33 orthologs of S. pombe has not been investigated. Hydropathy plots, however, showed that Meu10p has hydrophobic C and N termini, suggesting that Meu10p is also GPI anchored to the membrane. Moreover, the GPI anchor also seems functionally important in this protein, since removal of a 40-amino-acid residue at the C terminus (the putative GPI domain) is sufficient to decrease ascospore viability, whereas the cell wall localization of the protein is conserved. The dibasic KK residue is found in Ecm33p of C. albicans but is not found in AfEcm33p. Indeed, membrane-anchored GPI proteins of A. fumigatus, such as Gelps, Crhps, and acid phosphatase (I. Mouyna, unpublished data; 2), do not possess a dibasic protein, indicating that the dibasic rule does not apply to all fungi, at least not to A. fumigatus. The analysis of the ecm33 mutant in A. fumigatus is another example of the diversity of the functions of GPI proteins in this filamentous fungus. Some of the GPI proteins have enzymatic activities, such as phosphatase, phospholipase B, or proteases that are involved in fungal nutrition (2, 4, 18). Others are associated with cell wall construction, such as the glucanosyltransferase encoded by GEL or the CRH family gene products (14, 21, 32).
This is the first demonstration that conidia and mycelia of a mutant and a parental strain of A. fumigatus exhibit different susceptibilities to phagocytes. Since previous studies have shown that reactive oxidants are essential for the killing of this fungus by phagocytes (28), the different susceptibilities of the two fungal morphotypes could be associated, at least partly, with a higher sensitivity of mycelia to reactive oxidants. In agreement with the PMN data, the germ tubes of the mutant were indeed more susceptible to reactive oxidants in vitro than those of the wild-type and revertant strains (93% germination for the wild type and revertant versus 33% for the mutant after 8.5 h in Sabouraud medium in the presence of 1.5 mM H2O2). The higher resistance of mutant conidia to the phagocyte remains unexplained but could be due to major differences in cell wall organization that would lead to a lower permeability of the mutant cell wall to phagocyte toxic metabolites or a lower sensitivity to host enzymes, such as chitinases, that are present in high concentrations in the lung macrophages. A detailed chemical analysis of the mycelial and conidial mutant and wild-type strains is under way to explain these differences.
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(1-3) glucan synthases with different functions in Aspergillus fumigatus. Appl. Environ. Microbiol. 71:1531-1538.This article has been cited by other articles:
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