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Applied and Environmental Microbiology, May 2006, p. 3558-3565, Vol. 72, No. 5
0099-2240/06/$08.00+0 doi:10.1128/AEM.72.5.3558-3565.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.

School of Biological Sciences, University of Canterbury, Christchurch, New Zealand
Received 26 September 2005/ Accepted 26 February 2006
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B. gladioli pv. agaricicola is an important pathogen in the mushroom industry. It causes soft rotting symptoms on a number of commercially important mushrooms, such as Lentinula edodes, Pleurotus ostreatus, Flammulina velupies, Pholiota nameko, Hypsizygus marmoreus, and Grifola frondos in Japan and on different cultivated Agaricus species in New Zealand and Europe (14). While soft rot appears to be less prevalent than most of the other mushroom diseases and is only sporadically reported from farms in the United Kingdom and other European countries (9), when it occurs, it can cause devastating effects within very short periods of time. Thus, B. gladioli pv. agaricicola is now considered to be a pathogen that has the potential to cause significant crop losses in the mushroom industry (9, 14).
Cavity disease was first reported in 1992 (13). The causal microorganism was initially identified as Pseudomonas cepacia. The strain, designated CANU-PMS164, was isolated from New Zealand mushrooms with symptoms ranging from mild lesions to deep pitting (13), and it was shown to inhibit the growth of mushroom mycelia in vitro (14). Strain CANU-PMS164 rapidly degraded mushroom sporocarps, which resulted in marked tissue damage within 72 h of infection. Although cavity disease was originally thought to be a novel disease (18), it was later reclassified (as reported by Gill and Tsuneda [14]) as "rapid soft rot disease of edible mushroom." The causative agent was subsequently renamed Pseudomonas gladioli pv. agaricicola (14) and is now known as B. gladioli pv. agaricicola following the new genus nomenclature of members of the "pseudomallei group" proposed by Yabucchi et al. (35) and accepting the proposal of Lincoln et al. (21) that assigns the mushroom soft rotting bacteria to a third pathovar, "agaricicola" (21, 35).
In this study, we identify four genes necessary for the virulence of B. gladioli pv. agaricicola BG164R, the causative agent of a mushroom soft rot disease (21), also described as cavity disease of the white button mushroom Agaricus bitorquis (13). Avirulent mutants of B. gladioli pv. agaricicola were generated to answer three fundamental questions arising from previous work. First, what are the genes essential for the expression of cavity disease symptoms? Second, are the virulence factors necessary for cavity disease also required to inhibit mycelial growth? Last, why is there such a marked variation in disease severity? In other words, are environmental factors responsible for this variation, or is the differential intensity of disease an attribute of multiple pathovars that exhibit different but overlapping symptoms? We anticipated that identification of the virulence genes and investigating conditions related to disease expression would possibly provide an explanation for the variation in disease severity and explain why the disease is so infrequently reported.
Our findings reconcile the confusing history associated with the observed variation in the intensity of disease expression by the causative agent and advance the understanding of virulence at a molecular level. The ability of B. gladioli pv. agaricicola to inhibit mushroom mycelia has also always been associated with its ability to cause cavity disease (14). From these observations, it has been thought that the pathogen produces both hypha-degrading enzymes and toxins and that cavity disease symptoms are a combined effect of the toxin and the enzymes. The avirulent mutants are affected in the ability to secrete some virulence factors required for the symptoms of cavity disease yet retain inhibitory activity toward fungal mycelia.
(This research was conducted by P. Roy Chowdhury in fulfillment of the requirements for a Ph.D. from the University of Canterbury, Christchurch, New Zealand, 2004.)
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TABLE 1. List of strains, plasmids, cosmids, and vectors used
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For screening of mutants, 10,000 transconjugants arising from 66 independent experiments carried out in 16 attempts were screened for the transposition of the mini-Tn5, resulting in "no-cavity" phenotypes.
Transposon mutagenesis.
The transposon mini-Tn5KmlacZ2 (7), borne by pUTZ2 (Table 1) and maintained in E. coli S17-1
pir (32), was introduced into the recipient, BG164R, by conjugation. The conjugation procedure was as follows. The donor, E. coli S17-1
pir, and the recipient, BG164R, were grown in liquid broth supplemented with antibiotics for 18 h at the respective temperatures mentioned above. One milliliter of donor and recipient bacteria, harvested by centrifugation (2,000 x g for 3 min in a Bio-Rad mini benchtop centrifuge), was washed with fresh LB broth to remove antibiotics. The recipient was heat shocked at 43°C for 15 min, mixed with the donor in a ratio of 4:1 (1 ml of recipient to 250 µl of donor), and concentrated to 400 µl. Aliquots of 200 µl were applied on a sterilized filter paper placed on top of LB plates as a single droplet without any antibiotics and incubated at 30°C for 4 h. The mating mixture was recovered from filter paper by washing the filter with 1.5 ml of fresh LB broth; the mixture was concentrated to 200 µl, and 100-µl aliquots were spread on plates supplemented with rifampin, kanamycin, and chloramphenicol (15 µg ml1) and incubated at 30°C for 36 h to select for BG164R transconjugants.
Screening and isolation of avirulent mutants.
Transconjugants arising from independent matings were screened for mutations with an avirulent no-cavity phenotype in the mushroom bioassay. The number of mutations resulting in at least one auxotrophy was determined by transferring transconjugants to minimal agar plates.
Phenotyping.
All phenotypes were determined in comparison to wild-type BG164R.
Morphological changes in mutants were assessed using transmission electron microscopy. Bacterial cells from a 24-h incubation on LB plates were stained with 1% phosphotungstic acid and observed under bright-field conditions with either a Hitachi H-600 electron microscope or a JEOL JEM-1200EX electron microscope.
Motility, or the capacity of mutant bacteria to move away from the point of inoculation on the motility agar plates (0.1% [wt/vol] Bacto tryptone, 0.05% [wt/vol] yeast extract, and 0.5% [wt/vol] NaCl) supplemented with 0.3% agar, was monitored to assess any change in this ability.
Any alteration in the capacity of mutants to interact with the host tissue was monitored with scanning electron microscopy using a Leica s440 SEM, and tissue samples were prepared according to Atkey et al. (2).
The ability of the mutants to produce chitinase was monitored on 1% chitin extract plates (19) incubated at 30°C for 4 days and then scored in terms of the clearing of colloidal chitin around the colonies spotted on the plates. Protease secretion was studied by transferring the test colonies onto 0.1% skim milk agar plates and looking for the capacity of the strains to clear casein around the test colonies.
DNA manipulation and cloning.
The genomic DNA was prepared by the guanidium thiocyanate method (27), and plasmid DNA was prepared by the standard alkaline lysis method (29). For sequencing, plasmid DNA isolated using the alkaline lysis method was further purified by lithium chloride precipitation (29). DNA samples were routinely quantified using a deuterium lamp LKB Ultraspec Plus spectrophotometer. Restriction digestions were set up using the manufacturer's recommendations, analyzed by agarose gel electrophoresis (29), and visualized on a Sigma T2210 UV transilluminator. Gels were photographed using a Kodak Electrophoresis Documentation and Analysis System 120.
For regular cloning, vector DNA was dephosphorylated using calf intestinal phosphatase (Böehringer Mannheim) prior to ligation with the inserts following standard conditions described by Sambrook et al. (29).
Shotgun clones of the mutated genes in BG164R mutants were isolated by transforming DH5
electrocompetent cells (36) with ligation mixtures containing SalI-digested genomic DNA and the vector (pBluescript KS+). Desired clones were isolated by selecting colonies resistant to ampicillin (on vector) and kanamycin (in the transposon). The fact that each mutant had a single transposon insertion was confirmed by a Southern hybridization, in which genomic DNA of the mutants was hybridized to a probe (Table 1) of the kanamycin resistance (nptII) gene originally isolated from Tn5 (data not shown). SalI-generated DNA fragments of variable sizes (Table 1) spanning the transposon insertion sites in the genome of each of the avirulent mutants were "shotgun" cloned into pBluescript KS+.
Construction of a genomic library.
A genomic library of BG164R in cosmid pLAFR3 (33) was constructed and maintained in E. coli DH5
lacking recA activity (16) according to the method outlined by Fleischman et al. (10), except for the extraction of genomic DNA, which was done according to the guanidium thiocyanate method (27). Ligated DNA was packaged in vitro into phage heads using Packagene Lambda DNA Packaging System packaging extract (Promega), following the manufacturer's protocol (Promega Technical Bulletin 005).
Cosmid isolation by colony hybridization.
A total of 3,200 individual clones representing the B. gladioli pv. agaricicola library were screened by colony hybridization (24) with a 1.5-kb EcoRI/SalI probe constructed from pSPRC12. A random primed DNA labeling kit from Böehringer Mannheim was used to label 50 ng of the probe DNA with 32P, following the manufacturer's protocol. Approximately 200,000 cpm of [
-P32]dCTP-labeled probe was used, and membranes were hybridized to the probes for 16 h following the standard techniques of Sambrook et al. (29).
Cosmid mapping by Southern hybridization.
The 1.5-kb SalI-EcoRI fragment from the clone pSPRC12, which served as the gspF probe, had a single BamHI site and hybridized to two bands, 2.3 kb and 7.2 kb (see Fig. 3B), in the BamHI-digested cosmid DNA. Hence, these two bands were placed contiguously on the physical map of the cosmid. The gspK probe, constructed from pSPRC88, hybridized with a 6.5-kb BamHI fragment, as predicted from the restriction map.
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FIG. 3. (A) Clones aligned to the corresponding fragment of genomic DNA on the cosmid map of pCosBG. (B) Cosmid map. Sites on the map are as follows: B, BamHI; E, EcoRI; H, HindIII; S, SalI. (C) Arrangement of gsp gene cluster in B. cepacia strain KFI, which has 83 to 98% sequence similarity with BG164R gsp genes. The arrows indicate the positions of insertions of the transposon into the GSP operon.
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donor harboring the cosmid in the presence of a helper plasmid pRK2013 and were maintained in E. coli HB101 (3) following Carruthers et al. (4). The resultant transconjugants were selected from plates supplemented with appropriate antibiotics, purified, and checked for complementation using the assays described above.
DNA sequencing.
The clones were sequenced with IRD41-labeled T3 and T7 primers with a SequiTherm Long-Read Sequencing Kit LC from Epicenter Technologies in a Li-COR automated sequencer following the manufacturer's instructions, exploiting the dideoxy chain termination method of Sangers et al. (30). Sequences were analyzed using DNAMAN, version 4.02 (Lyonnon BioSoft). The BLASTN and BLASTX (www.ncbi.nlm.nih.gov/BLAST) programs were used to search for similar sequences in public databases (1).
Antifungal assay.
Colonies of test bacteria were streaked with a sterile loop approximately 1 cm away from 7-day-old actively growing mushroom mycelia on compost malt agar plates (15) and further incubated for 5 days at 23°C.
Mutant rescue experiments.
Overnight cultures of BG4-12Cos, BG12-88Cos, and BG15-40Cos were diluted 100-fold and grown at 30°C in LB broth in the absence of any antibiotic selection. Aliquots (100 µl each) were aseptically removed from the cultures at 24-h intervals for 3 days, serially diluted 106-fold, spread on LB plates, and incubated for a further 24 h. Individual colonies arising on the plates were screened for kanamycin (on transposon) and tetracycline (on pCosGSP) susceptibilities, indicating loss of both the transposon and the cosmid. All such kanamycin- and tetracycline-susceptible colonies were tested using the mushroom bioassay and scored for strains exhibiting wild-type phenotypes, suggesting the recreation of the wild-type strain by a double-crossover event or allelic exchange between the mutated genes and the complementing fragment of DNA present in pCosGSP. Recreation of wild-type strains was later confirmed by Southern blot analysis.
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FIG. 1. The mushroom bioassay that demonstrates the effect of mutations on cavity disease symptoms: control (A), BG164R (wild type) (B), BG4-12 (C), BG12-88 (D), BG12-147 (E), BG15-40 (F), BG15-87 (G), and BG16-787 (H).
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FIG. 2. Complementation assays with the wild-type BG164R (A), the representative GSP mutant BG4-12 (B), the complemented mutant BG4-12Cos (C), and BG4-12LAF3 (D). Results shown are for the following: mushroom assay (row 1), transmission electron microscopy observations (row 2), protease assay (row 3), and chitinase assay (row 4). The arrow (row 4) indicates the region of chitin degradation around the complemented BG4-12Cos colony.
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Cloning and identification of transposon-tagged genes in cavity disease mutants.
To identify the mutated genes, DNA flanking the transposon was sequenced in all the clones. BLAST analysis of the sequences suggested that the transposon insertions were located in homologs of different general secretory pathway (gsp) genes. The mutations were mapped to the gspF gene (BG4-12), gspK gene (BG12-88 and BG12-147), gspE gene (BG15-40 and BG16-787), and gspD gene (BG15-87) (Fig. 3). The DNA sequences of these four genes were 83 to 98% identical to corresponding gsp genes of two other species belonging to the genus Burkholderia, namely, B. cepacia strain KF1 (GenBank accession number AB050004.1) and Burkholderia pseudomallei strain 1026b (GenBank accession number AF110185).
Each mutation could be complemented using a single genomic clone carried by the cosmid pCosGSP. The genomic fragment of 23.4 kb was isolated from a pLAFR3-based genomic library of B. gladioli BG164R. pCosGSP was introduced by triparental mating, and the presence of the cosmid in the mutants was confirmed by subsequent reisolation and restriction analysis. The cosmid restored the virulent cavity-causing phenotype in each mutant. Since all the mutations mapped to the gsp operon (Fig. 3), only three of four mutantsBG4-12 (gspF), BG12-88 (gspK), and BG15-40 (gspE)were used for further experiments. The extent of degradation of milk proteins and colloidal chitin by the mutants and the numbers of flagella (Fig. 2) were restored back to the levels of the wild type when mutants were complemented in trans by the cosmid pCosBG. All three representative gsp mutants could be rescued by recombination of the cosmid with the chromosome, which was confirmed by Southern hybridization (data not shown), and when they were compared in a bioassay to the original mutants BG4-12, BG12-88, and BG15-40, no differences in the intensity of cavity formation were observed.
Mapping of the gsp genes in the cosmid pCosGSP.
The relative order of the genes coding for the different components of the type II GSP machinery appears to be highly conserved, as does the size of the gsp operons in the different species of Burkholderia, which varies from 9 to 14 kb (8) (GenBank accession number AB050004). The gspF, gspK, and gspE genes also define the ends and middle of the GSP cluster in closely related members of Burkholderia (28). The cosmid pCosGSP probably carried the full GSP locus of BG164R, because it complemented these three genes in the different BG164R mutants. The GSP locus in B. gladioli was also physically mapped by Southern hybridization, and the relative order of the different SalI fragments of DNA cloned from the mutants could be arranged along the 23.4-kb cosmid pCosGSP.
The genomic insert in the cosmid was later subcloned (pGSP ME H-H16.7, pGSP ME H-H2, pGSP ME1.7, pGSP KS B-B 2.2, and pGSP KS B-B 7.2) as smaller fragments, and the ends of each fragment were sequenced. The above data, together with the end-sequencing data of the cosmid subclones, were used to map (Fig. 3B) the entire 23.4-kb cosmid, pCosGSP, which revealed the presence of the entire gsp gene cluster of BG164R on the cosmid.
Factors involved in the inhibition of mushroom mycelia are different from those involved in the expression of cavity disease.
The no-cavity-forming gsp mutants, BG4-12 and BG15-40, still retained the capacity to inhibit mushroom mycelia (Fig. 4). The extent of inhibition was similar to that expressed by the wild-type cavity-forming strain, BG164R, thereby indicating that the two processes are independent of each other.
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FIG. 4. Inhibition of mushroom mycelia by BG164R and its no-cavity-forming mutants: BG164R (A), BG4-12 (B), BG15-40 (C), and P. putida (D).
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It is normally expected that a small number of pathogenic bacteria would initially colonize a mushroom and multiply to reach the threshold concentration to cause disease. To test this hypothesis, mushrooms were inoculated with various concentrations of BG164R, and disease progression was observed at regular intervals over 5 days (Table 2). Surprisingly, no disease symptoms were observed when as few as 20 cells of BG164R were used. This was in contrast to the results presented by Atkey et al. (2), who initiated soft rot disease within 72 h using only 3 to 5 cells of the strain RR3.
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TABLE 2. Cavity formation as a function of inoculum size
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TABLE 3. Interactions between bacteria on mushrooms influence severity of cavity disease
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The GSP of gram-negative bacteria is the main terminal branch of a two-step secretion process. It generally consists of 12 invariant proteins spanning the cell envelope to form the core secreton, plus some associated proteins present in specific cases for the efficient functioning of the secretory machinery (26). The GSP apparatus in the different bacteria studied shows a high species specificity. The gsp operon of B. pseudomallei (1026b) is a well-characterized and mapped operon in the genus Burkholderia. The gspC gene in B. pseudomallei 1026b is transcribed in a direction opposite to the other genes in the gsp gene cluster (8). The two boundaries of this gsp operon were identified by constructing mutants specifically in the orfC and the orfD genes present in the left and right ends of the gene cluster, respectively, which did not have any effect on secretion. We present a physical map of the gsp operon of B. gladioli pv. agaricicola which demonstrates that the organization of the gsp genes in B. gladioli is similar to that of B. pseudomallei 1026b.
In all members of the genus Burkholderia studied so far, the virulence factors that are secreted through the GSP include proteases, lipases, and phospholipase C. The most common virulence factors in all of these cases have been the different types of proteases (5, 8, 20, 31). Although the above-mentioned secreted factors have been reported to be dependent on the GSP for secretion, there are two different schools of thought about their roles in pathogenesis. In some cases, the secreted products could be directly linked to pathogenesis (31, 8), while in others they were not (12). Reports on the secretion of virulence factors by the GSPs in the different Burkholderia strains have always been correlated to the pathogenicity in animal models. This is the first report linking the type II secretion system to a disease in mushrooms. We have shown through the characterization of avirulent mutants that the GSP in BG164R is necessary for secretion of the cavity disease virulence factors, which may or may not be the protease and chitinase activities monitored in this study.
The complementation experiments confirm that each tested mutant carried a mutation in only the 23.4-kb region corresponding to the gsp locus. Therefore, we expect that the virulence factors themselves are probably still produced by BG164R avirulent mutants. We also agree with Gill and Tsuneda (14), who hypothesized that cavity disease is a manifestation of the combined action of more than one factor. The secreted proteins are capable of causing disease symptoms only when present together on the mushroom. Their hypothesis is strengthened by the finding that gsp mutants were avirulent because the inability to secrete certain proteins would affect several virulence factors simultaneously.
Gill and Tsuneda (14) also proposed that the expression of cavity disease is a combined effect of mushroom tissue-degrading enzymes and toxic compounds that inhibit the growth of the mycelia. We provide evidence that the mechanism of inhibition of mushroom mycelia is different from that of degradation of sporocarps, since the avirulent mutants still inhibited mushroom mycelia.
The avirulent mutants isolated in the course of this study had mutations in gspD, gspE, gspF, and gspK. The role and localization of these proteins are known by comparison to their description in other species. The GspD protein (BG15-40) is the only outer membrane-associated protein forming the secreton. The GspF and GspK proteins (BG4-12, BG12-88, and BG12-147) are associated with the inner membrane (26). The GspE protein (BG15-40 and BG15-87) is cytoplasmic. It possesses a conserved ATP-binding motif providing an autokinase activity; evidently it energizes the secretion process or assembly of the secretory apparatus (34).
This is the first observation associating a reduction in flagella number to mutations in the gsp genes. The only gene that is known to be linked to flagella number is the fleN gene in Pseudomonas aeruginosa. The FleN protein regulates flagella number by acting as a negative regulator of fleQ, the transcriptional activator of the flagellar synthesizing genes (6). The fleN mutants of P. aeruginosa strains PAK and PAO1 had an increase in flagella number. Interestingly, Dasgupta et al. (6) also suggested that motility and flagella number were not necessarily linked. All our mutants were motile (data not presented) despite a reduction in the number of flagella.
The occurrence and severity of cavity disease are highly variable, and the reason for the variability has gone unexplained until now. We provide evidence that antagonistic interactions between B. gladioli and endogenous flora account for this variability. Healthy New Zealand mushrooms appear to be colonized consistently by E. americana. This bacterium significantly impaired B. gladioli from creating the conditions necessary for cavity disease symptoms. Possibly E. americana prevents B. gladioli from reaching the necessary population density to cause symptoms, either passively through resource competition or actively by expression of a toxin. Other mushroom diseases, such as brown blotch caused by Pseudomonas tolaasii (25) and internal stipe necrosis caused by E. americana (18), require a very high number of cells (
108) for their initiation under test conditions. Thus, either quantitative or qualitative differences in the native flora from mushroom to mushroom may account for all or some of the variability in the disease.
E. americana PRC120 is the first report of a New Zealand isolate of E. americana from mushrooms, and it has been deposited in the New Zealand Culture Collection (accession number of NZRM 4225). Interestingly, PRC120 isolated from button mushrooms in New Zealand did not cause any necrotic symptoms (17, 18) in our assay.
While we present evidence that E. americana inhibits cavity disease on New Zealand mushrooms, it remains formally possible that other bacteria, not as consistently distributed, augment the ability of B. gladioli to establish the conditions necessary for the disease. Moquet et al. (25) in their study of blotch disease observed a species-specific difference in symptom intensity to disease caused by P. tolaasii. Inglis et al. (18) mentioned a variation in the intensity of disease symptoms by E. americana and reported an interaction between P. fluorescens and E. americana in the formation of internal stipe necrosis of mushrooms. They also suggested a contributory role played by P. fluorescens in the expression of disease symptoms. To the best of our knowledge, this is the first report of an interaction on mushrooms that is antagonistic.
We are indebted to H. K. Mahanty for his mentorship in this project. We thank A. L. J. Cole for providing the strain BG164, Mark Silby for critical review of the manuscript, and Scott Godfrey and Mark Braithwaite (MAF-New Zealand) for the identification of the mushroom isolates PRC120, PRC121, and PRC122.
Present address: Bioprotection and Ecology Division, P.O. Box 84, Lincoln University, Christchurch, New Zealand. ![]()
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