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Applied and Environmental Microbiology, June 2006, p. 4096-4104, Vol. 72, No. 6
0099-2240/06/$08.00+0 doi:10.1128/AEM.00066-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
International Center for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh,1 Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland,2 Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, Maryland,3 University of Maryland Institute for Advanced Computer Studies, College Park, Maryland4
Received 10 January 2006/ Accepted 13 March 2006
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Despite being autochthonous to the aquatic environment (6, 7), toxigenic strains of V. cholerae O1 are only infrequently isolated from surface waters by culture methods (7, 21) and are rarely isolated during interepidemic periods (18). It was when fluorescent-antibody (FA) and molecular-based detection methods were used that the presence of V. cholerae O1 in the environment was unequivocally demonstrated (3, 18) and its viable but not culturable state was discovered (5, 7, 18, 29). V. cholerae O139 has been shown to behave similarly to V. cholerae O1, since detection and isolation of V. cholerae O139 from water samples were negative by culture methods between epidemics (19, 21).
The correlation of sea surface temperature and sea surface height in the Bay of Bengal with the occurrence of cholera in Bangladesh has been established (8). Field studies in Bakerganj, which is located 70 km north of the Bay of Bengal coast, showed correlation of selected environmental parameters with the ecology and epidemiology of V. cholerae and cholera, respectively (19). In 1992, V. cholerae serogroup O139 was first isolated in Bangladesh in the vicinity of the Bay of Bengal. With the resurgence of V. cholerae O139 in 2002, the number of cholera cases caused by this serogroup surpassed the number caused by V. cholerae O1 in Bangladesh. This phenomenon is believed to have been the result of rapid genetic changes in V. cholerae O139, with at least seven different ribotypes detected (10, 11, 13). The reservoir for V. cholerae O139 is not known (11). Therefore, combined epidemiological and ecological surveillance was undertaken in two sites where cholera is endemic, Bakerganj and Mathbaria, which are located near the Bay of Bengal and have not been studied previously. The seasonality of cholera in the coastal ecosystem of Mathbaria and the subcentral Bakerganj is such that seasonal outbreaks are caused alternatively by V. cholerae O1 El Tor and O139. Results of direct culture, coupled with colony blot hybridization (CBH), selective culture, and direct FA assay (DFA), obtained in the study reported here demonstrate that V. cholerae O1 El Tor and O139 are present in the aquatic environment of both Bakerganj and Mathbaria, Bangladesh, throughout the year.
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FIG. 1. Map of Bangladesh showing areas where the NIH epidemiological and ecological surveillance was conducted. Bakerganj and Mathbaria are the two southern foci of endemic cholera. The central foci of endemic cholera, Matlab and Dhaka (the capital of Bangladesh), are also shown.
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Collection and analysis of clinical specimens.
Biweekly clinical surveillance was carried out routinely in Bakerganj and Mathbaria between January 2004 and May 2005, for a period of 17 months. Rectal swabs were obtained every 2 weeks from patients admitted to the THCs of Bakerganj and Mathbaria. The rectal swabs, from suspected cholera patients with watery stool, were collected for three consecutive days and after each collection were immediately placed into Cary-Blair medium (35, 36) and transported to the central laboratory of the International Center for Diarrhoeal Disease Research, Bangladesh (ICDDR, B), in Dhaka. In the laboratory, the rectal swabs were placed in alkaline peptone water (APW) (Bacto Peptone, 10 g/liter; sodium chloride, 10 g/liter; pH 8.8) and incubated at 37°C for 4 h. The rectal swabs, as well as the 4-h broth enrichments, were inoculated by streaking on taurocholate-tellurite-gelatin agar (TTGA) (Trypticase, 10 g/liter; sodium chloride, 10 g/liter; sodium taurocholate, 5 g/liter; sodium carbonate, 1 g/liter; gelatin, 30 g/liter; agar, 15 g/liter; pH 8.5) (after autoclaving, the agar was cooled to 50°C and 5 ml of 0.1% potassium tellurite solution added and mixed well, after which the agar was poured into plates). Suspected colonies resembling V. cholerae were subjected to slide agglutination using polyvalent anti-O1 and anti-O139 sera.
Collection of environmental samples and processing.
Water and plankton samples were collected monthly between March 2004 and May 2005 from seven ponds and one river in Bakerganj and biweekly from six ponds in Mathbaria (Fig. 1). All samples were collected with aseptic technique using sterile dark Nalgene bottles (Nalgene Nunc International, St. Louis, Mo.), placed in an insulated plastic box, and transported overnight at ambient air temperature ranging from 20 to 35°C from the site of collection to the Dhaka laboratory of ICDDR, B. All samples were processed the following morning, with approximately 20 h elapsing between sample collection in the field and processing in the laboratory.
For sample collection, 100 liters of water was filtered successively through 64-µm and 20-µm mesh nylon nets (Millipore Corp., Bedford, MA) (placing the 64-µm net sequentially in front of the 20-µm nylon net, with each having a collection bucket at the base), and 50 ml of the concentrates was collected initially as a crude measure of zooplankton and phytoplankton, respectively. However, it was observed that the small-size fraction contained nauplii of zooplankton in large numbers. Also, during the process of filtration, 500 ml of filtrates from the 20-µm mesh net was collected as the representative water to be analyzed for planktonic (unattached, free-living) bacteria. Both the 64-µm and 20-µm plankton samples were further concentrated in the laboratory by using respective plankton nets (specially devised, netted plastic beakers) to a final volume of 5 ml each. For bacteriological analysis, the plankton samples were crushed using a glass homogenizer (Elberbach Corp., Ann. Arbor, Mich.) to release the attached bacteria. The homogenates were used for DFA, direct plating, and enrichment for V. cholerae. Water samples were concentrated by being filtered through a 0.22-µm bacteriological membrane filter (Millipore Corp., Bedford, MA), and the retained content on the membrane filter was washed into phosphate-buffered saline (pH 8.0) for the purpose stated above. DFA was also carried out on whole plankton samples when homogenates tested positive for V. cholerae O1 and/or O139.
Enrichment and plating.
Samples were enriched in APW (Difco Laboratories, Detroit, Mich.) at 37°C for 6 to 8 h before plating, as described previously (18, 21). About 5 µl of enriched APW broth was streaked, using an inoculating loop, onto both thiosulfate-citrate-bile-salts-sucrose (TCBS) and TTGA and incubated at 37°C for 18 to 24 h. Colonies with the characteristic appearance of V. cholerae were confirmed by standard biochemical (35, 36) and serological tests (and, in the case of the latter, by testing with polyvalent and monoclonal antibodies specific for V. cholerae O1 or O139) and, finally, by molecular methods (26).
CBH.
Digoxigenin (DIG) labeling of the ctxA probe and detection were performed following the manufacturer's protocol supplied with the DIG DNA labeling and detection kit obtained from Boehringer Mannheim Corp. Briefly, neat or appropriately diluted samples were spread plated directly onto Luria-Bertani agar (LA) plates and incubated overnight at 37°C. Colonies (between 100 and 300) from each culture plate were lifted onto a nylon membrane (Magna; Osmonics Inc.) by impression. The membranes with adherent colonies were placed, keeping the colony side up, onto no. 3 Whatman filter paper presoaked with lysis buffer (0.5 M NaOH and 1.5 M NaCl), followed by placing twice onto no. 3 Whatman filters presoaked with neutralizing solution (0.5 M Tris [pH 7.2] and 1.5 M NaCl). Finally, the filters were rinsed twice in 1x SSC buffer (0.15 M NaCl plus 0.015 M sodium citrate). The filters were dried (28) and treated with 100 ml of proteinase K solution (40 µg/ml in 1x SSC) for 30 min at 42°C with gentle shaking. The filters were rinsed three times in 1x SSC in a shaking water bath for 10 min at room temperature and were then air dried.
Oligonucleotides used as primers for PCR amplification of 302 bp of ctxA were 5'-CTCAGACGGGATTTGTTAGGCACG-3' (forward) and 5'-TCTATCTCTGTAGCCCCTATTACG-3' (reverse) (16). The amplified target DNA was purified, and DIG labeling was performed following the manufacturer's protocol supplied with the DIG DNA labeling kit. After prehybridization, hybridization, and stringency washing, blots were developed following the immunochemical detection protocol supplied by the manufacturer.
DFA.
DFA counts were done as described elsewhere (3). Briefly, samples were preincubated overnight in the dark with 0.025% yeast extract (Difco Laboratories, Detroit, Mich.) and 0.002% nalidixic acid (Sigma). The samples were then centrifuged and the pellet stained, using fluorescein isothiocyanate-conjugated V. cholerae O1- or O139-specific antiserum obtained from New Horizon Diagnostic Corp. (Columbia, MD). Stained samples were counted under UV light, using an epifluorescence microscope (Olympus BX51, Japan) connected to a digital camera (Olympus DP20).
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TABLE 1. Isolation of V. cholerae O1 and O139 from clinical and environmental samples collected at Bakerganj and Mathbaria between January 2004 and May 2005a
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FIG. 2. Isolation of V. cholerae O1 and O139 Bengal by month from clinical (Clin) and environmental (Env) samples collected in Bakerganj, a subcentral, southern focus of endemic cholera in Bangladesh. Rectal swabs (n = 182) from suspected cholera patients, collected biweekly (January 2004 to May 2005) for three consecutive days at the Thana Health Complex, were maintained in Cary-Blair medium for microbiological analysis. Environmental samples (n = 360; 120 each of water and of two size fractions of plankton), collected monthly (March 2004 to May 2005) from eight water bodies, were transported to Dhaka for microbiological analysis. For isolation of V. cholerae, clinical samples were streaked directly and environmental samples were either plated directly on LA for CBH or subjected to selective enrichment before being plated on TCBS and TTGA. Suspected V. cholerae colonies were identified by standard biochemical (35, 36), serological, and molecular methods (26).
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FIG. 3. Isolation of V. cholerae O1 and O139 Bengal by month from clinical (Clin) and environmental (Env) samples collected in Mathbaria, a coastal focus of endemic cholera located adjacent to the Bay of Bengal. Rectal swabs (n = 194) from suspected cholera patients, collected biweekly (January 2004 to May 2005) for three consecutive days at the Thana Health Complex, were maintained in Cary-Blair medium for microbiological analysis. Environmental samples (n = 495; 165 each of water and of two size fractions of plankton), collected biweekly (March 2004 to May 2005) from six water bodies, were transported to Dhaka for microbiological analysis. For isolation of V. cholerae, clinical samples were streaked directly and environmental samples were either plated directly on LA for CBH or subjected to selective enrichment before plating on TCBS and TTGA. Suspected V. cholerae colonies were identified by standard biochemical (35, 36), serological, and molecular methods (26).
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Environmental surveillance in Bakerganj.
Of the 360 environmental samples collected in Bakerganj (120 each of water and of two size fractions of plankton) between March 2004 and May 2005, over a period of 15 months, 32 (9%) yielded cholera vibrios, of which 31 (97%) were V. cholerae serovar O1 and 1 was serovar O139 (Table 1). Isolation of V. cholerae was accomplished by employing direct culture of samples on L agar, followed by CBH and APW enrichment, followed by selective culture. Of the 32 cholera vibrios, 24 (75%) of the V. cholerae O1 strains were isolated by enrichment and selective culture and 7 (22%) of the V. cholerae O1 strains and 1 (3%) of the V. cholerae O139 strains were isolated by direct culture, based on positive CBH (Table 2). Of the 31 strains of V. cholerae O1, 12 (39%) were isolated from water and the 20-µm size fraction plankton, and the remaining 7 (23%) were isolated from 64-µm size fraction plankton samples. The single strain of V. cholerae O139 isolated in Bakerganj was from 64-µm size fraction plankton. The distribution of cholera vibrios by month is shown in Table 1.
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TABLE 2. Isolation and detection of Vibrio cholerae from water, 64-µm size fraction plankton, and 20-µm size fraction plankton samples collected from the aquatic environment of Bakerganja
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TABLE 3. Isolation and detection of Vibrio cholerae from water, 64-µm size fraction plankton, and 20-µm size fraction plankton samples collected from the aquatic environment of Mathbariaa
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As shown in Table 2, of the 360 environmental samples (120 each of water and of two plankton size fractions) collected in Bakerganj, 70 (19%) were V. cholerae, of which 59 (84%) were V. cholerae O1 and 11 (16%) were V. cholerae O139 Bengal. Of the 59 DFA-positive V. cholerae O1 strains, 20 (34%) were from the 64-µm size fraction plankton samples, 20 (34%) were from the 20-µm size fraction, and 19 (32%) were from water. Of the 11 V. cholerae O139 strains, 4 (36%) were from the 64-µm size fraction, 2 (18%) were from the 20-µm size fraction, and 5 (45%) were from water.
Of the 495 environmental samples (165 each of water and of two plankton size fractions) collected biweekly in Mathbaria, 141 (29%) V. cholerae strains were detected by DFA, of which 95 (67%) were V. cholerae O1 and 46 (33%) were O139 Bengal (data by month are shown in Table 3). Of the 95 DFA-positive V. cholerae O1 strains, 36 (38%) were from the 20-µm size fraction, 27 (28%) were from the 64-µm size fraction, and 32 (33%) were from water. Of the 46 DFA-positive V. cholerae O139 strains, 19 (41%) were from the 20-µm size fraction, 18 (39%) were from the 64-µm size fraction, and 9 (20%) were from water.
DFA results both for Bakerganj and Mathbaria showed V. cholerae O1 and O139 cells of various sizes and shapes, either as single cells or in biofilms (1). Although the numbers of V. cholerae O1 and O139 varied from month to month, the single cells or cluster of cholera vibrios was notable during cholera outbreaks, in both Bakerganj (Table 2) and Mathbaria (Table 3). Most significant was the fact that the cholera vibrios were present in the aquatic environment throughout the year.
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Hospital surveillance data in Bakerganj have shown a marked seasonality in the numbers of cholera cases attributed to V. cholerae O1 biotype El Tor. A recent study conducted in Bakerganj (31) produced similar results on the incidences of V. cholerae O1 and O139. However, V. cholerae O139 was not linked to cholera cases in Bakerganj during the present study; that is, sporadic cases of cholera continued to occur during the interepidemic periods. Nevertheless, seasonality was clearly noted, beginning with the spring peak (before monsoon) and with a sharp rise in the number of cases during the fall peak (after monsoon). Based on surveillance data coupled with data published from an earlier study, Bakerganj can be considered to be an area where V. cholerae O139 is endemic, even though V. cholerae O139 was not isolated from any of the cholera cases in Bakerganj.
In contrast to results obtained in the previous ecological study, which reported poor recovery of cholera vibrios from water in Bakerganj (19), isolation of V. cholerae O1 biotype El Tor was achieved for 9% of the environmental samples. A significant proportion of these were isolated by direct culture, using positive CBH as the indication of the presence of V. cholerae and with subsequent intense culture methods being applied. Antibiotic-supplemented primary isolation media gave improved recovery of cholera vibrios, referred to as "conditionally viable environmental cells" (12), because conventional culture methods underestimate the conditionally viable environmental cells without use of antibiotic-supplemented media to suppress competition from other aquatic bacteria. Nonetheless, isolation of a large number of V. cholerae O1 El Tor strains from environmental samples collected in September 2004, followed by a large outbreak of cholera caused by V. cholerae O1 El Tor in October to December 2004, points to surface water as the habitat of V. cholerae of both serotypes (6, 7). Isolation of V. cholerae O1 from environmental samples was successful also in April 2005, when the first seasonal cholera outbreak for Bakerganj occurred.
The association of V. cholerae with planktonic copepods (7, 16, 18, 19) and aquatic flora (20) is now well established. However, successes in recoveries of cholera vibrios from water and the two plankton size fractions were essentially similar, with no significant increase in the abundance of V. cholerae in one or the other of the two plankton size fractions. Because a significant proportion of zooplankton eggs and nauplii were observed in the 20-µm size fraction, separation into phytoplankton and zooplankton by size was overridden by the presence of a dominance of zooplankton in both fractions.
The data obtained in this study clearly show V. cholerae to be native to the aquatic environment of Bakerganj (6, 7, 15, 17, 20, 29). The coexistence and environmental reservoir for the cholera vibrio serogroups O1 and O139 were confirmed by DFA detection (3, 18) in the environmental samples, even when the samples were collected during the interepidemic period.
This report is the first to provide surveillance data for the coastal ecosystem of Mathbaria, demonstrating two well-defined seasonal peaks of cholera (31, 34). The first seasonal peak of 2004, recorded in April to May, was caused by V. cholerae O1 biotype El Tor. The second peak, which began and ended in November 2004, was also caused by V. cholerae O1, as in Bakerganj. V. cholerae O139 was not recovered during these two yearly outbreaks of cholera in Mathbaria. The most important observation was, however, in March 2005; V. cholerae O139 reemerged as the sole cause of a large outbreak of cholera in Mathbaria, whereas the two immediate past outbreaks were attributed to V. cholerae O1. This resurgence of V. cholerae O139 as the causative agent of cholera in Mathbaria occurred when it had consistently been absent from all other endemic focal points in Bangladesh since 2002 (11, 30). Thus, a coastal reservoir for V. cholerae, in particular V. cholerae O139, is concluded to exist (31, 34).
The presence of V. cholerae O139 in the aquatic environment is particularly important. First, isolation of toxigenic V. cholerae O1 and O139 from surface water samples by culture is rarely, if ever, achieved (7, 16, 21). Second, V. cholerae O139 has remained consistently absent from areas of Bangladesh where cholera is endemic since it was last recorded in the spring of 2002 (11, 30). Third, in spite of being ctx+ (1) and metabolically active in the environment, V. cholerae O139 did not cause either of the two seasonal peaks in cholera cases in 2004. Thus, the coastal ecosystem, which is believed to be the traditional breeding ground for the cholera bacteria, serves as the ultimate reservoir of cholera vibrios of both serogroups (2, 4, 28, 34).
V. cholerae abundance appears to be triggered by environmental signals. The central role of a climatic factor(s) (8, 11, 19) in the clonal selection of an epidemic strain becomes evident from the reemergence of V. cholerae O1, which eventually displaced the epidemic clone of V. cholerae O139 and remained the sole causative agent of cholera in Mathbaria. Thus, there is ample reason to believe that V. cholerae O139 can displace the currently prevalent seventh-pandemic O1 El Tor strains and initiate an proposed eighth pandemic of cholera (2, 34).
The isolation of V. cholerae O1 and O139 by culture coupled with CBH and the year-round detection of culturable cells or viable but nonculturable cells by DFA (3, 5, 18), either as single cells or as clusters of cells within structured biofilms (1), leads to the conclusion that cholera bacteria (6, 7) are native to the coastal aquatic ecosystem of Bangladesh. The biofilms of V. cholerae observed during the present study are important in the life cycle of V. cholerae (23) and constitute a significant stage in its aquatic habitat.
Recent molecular studies have documented the establishment of variant alleles in V. cholerae O139 strains generated by lateral gene transfer during epidemics (13). Rapid genetic changes among V. cholerae O139 strains are also documented to have resulted in at least seven different ribotypes (10, 11). Our data for Mathbaria, coupled with observations reported earlier (11, 14, 19, 31, 34), show that V. cholerae O139 coexists with V. cholerae O1 in the aquatic environment. This study is therefore the first to show that while V. cholerae O139 remains present in low numbers or temporally absent from inland cholera foci (11), it shares the same niche with the seventh-pandemic V. cholerae O1 El Tor in the coastal aquatic ecosystem of Bangladesh.
We acknowledge the contribution of the NIH epidemiological and environmental surveillance teams for their excellent support and commitment to the research.
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