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Applied and Environmental Microbiology, June 2006, p. 4232-4238, Vol. 72, No. 6
0099-2240/06/$08.00+0 doi:10.1128/AEM.02904-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Bioremediation, Centre for Environmental Research Leipzig-Halle (UFZ), Permoserstr. 15, 04318 Leipzig, Germany,1 Wageningen University and Research Centre, Costerweg 50, 6701 BH Wageningen, The Netherlands,2 Centre for Environmental Biotechnology (UBZ), Permoserstr. 15, 04318 Leipzig, Germany,3 Institute of Interdisciplinary Isotope Research (IIF), Permoserstr. 15, 04318 Leipzig, Germany,4 Department of Environmental Microbiology, Centre for Environmental Research Leipzig-Halle (UFZ), Permoserstr. 15, 04318 Leipzig, Germany5
Received 9 December 2005/ Accepted 2 April 2006
| ABSTRACT |
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| INTRODUCTION |
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One of the highly solvent-tolerant bacteria is P. putida DOT-T1E. This bacterium has been the subject of many investigations concerning the mechanisms responsible for solvent tolerance properties (33, 37). Very recently, an extended proteomic survey was performed to identify all processes responsible for the strain's adaptation to toxic solvents such as toluene, showing that a whole cascade of mechanisms is necessary to allow the bacterium to survive in the presence of such hazardous solvents (38). Additionally, a detailed description of the selection of the ideal solvent for two-phase fermentations with this bacterium was carried out (29). The major result of this investigation was that 1-decanol seems to be the ideal solvent for this bacterium in such biotransformation processes (29, 35).
For successful application of this systemin competition with traditional chemical synthesisthe stability of the biocatalyst and high growth yields are necessary in order to guarantee high production rates. Therefore, a detailed characterization of the growth behavior (growth rates and yields) and cellular energetics of the cells when grown in the presence of a solvent is necessary. Next to the well-described changes in the membrane composition (7), surface properties (6) are also thought to be important to allow complete adaptation to solvents.
The aim of this study was to investigate the exact growth parameters, energetics, and cell surface properties of P. putida DOT-T1E in a two-liquid-phase system with 1-decanol to assess the stability and activity of this biocatalytic system for future biotechnological applications.
| MATERIALS AND METHODS |
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Culture conditions.
P. putida DOT-T1E was cultivated in a mineral medium as described by Hartmans et al. (8), with sodium succinate as the carbon and energy source. Adaptation of the bacterium to the solvent was achieved by growing the cells in the presence of 10% (vol/vol) 1-decanol in overnight cultures. Cells were grown in 50-ml shaking cultures at 30°C in a horizontally shaking water bath at 180 rpm.
Preparation of energized resting cells.
Exponentially growing cells (50 ml) were harvested by centrifugation and suspended in an equal volume of potassium phosphate buffer (50 mM, pH 7.0), with 4 g/liter sodium succinate as the energy source. Experiments were started 45 min after the suspension of cells, by which time growth had stopped completely.
Fermentations.
Fermentations were carried out in a 5-liter fermenter (ISF-205; INFORS GmbH, Einsbach, Germany). Parameters such as temperature (°C), pH, CO2 output (%), O2 content (%), pO2 (%), airflow (liters/min), stirrer speed (rpm), and total weight (kg) of the fermenter were monitored online. IRIS software (INFORS Control AG, Bottmingen, Switzerland) allowed control of the measured parameters. Data were obtained and recorded with a Servomex Analyser series 1400 instrument (East Sussex, England). Standard parameters for fermentations were as follows: 30°C, pH 7.1, and 1,500 rpm. The fermenter was inoculated with an overnight culture so that a starting optical density of 0.08 at 560 nm was reached. Due to difficulties in measuring the optical density in a dispersed two-phase system, growth data were obtained via measuring the protein content of the cells (4). In the computer-controlled fermentation unit, growth was determined continuously as CO2 production. For the fermentations carried out in this study, a direct correlation between CO2 production and protein content was observed.
Cellular K+ content.
Five-milliliter samples were harvested at regular intervals before and after addition of the solvent. Separation of cells from the supernatant was carried out by rapid centrifugation (Heraeus centrifuge; 10,000 rpm, 10 min). The cell pellet was disrupted by incubation in 5% trichloroacetic acid at 90°C for 15 min, and debris was removed by centrifugation. The K+ content of the supernatant was measured by inductively coupled plasma-optical emission spectroscopy using a Spectroflame P/M spectrometer (SPECTRO Analytical Instruments, Kleve, Germany). All experiments were carried out three times, with a standard deviation of <10%.
ATP concentration.
One milliliter of cell suspension was added to 0.5 ml ice-cold 1.3 M perchloric acid (23 mM EDTA) in 2-ml sterile Eppendorf tubes. After being mixed, the cell extract was incubated for 30 min at 4°C and subsequently centrifuged at 10,000 rpm for 15 min (4°C). One milliliter of the supernatant was transferred to sterile Eppendorf tubes, and the pH was set to 7.5 by using a 0.72 M KOH (0.16 M KHCO3) solution. Again, the sample was centrifuged at 10,000 rpm for 15 min (4°C), and 0.5 ml of the supernatant was stored at 20°C for later analysis. The ATP concentration in the cells was determined by using a luciferin-luciferase bioluminescence reaction (ATP kit SL; BioThema AB, Sweden) (25). In this reaction, light is formed from free ATP and luciferin via the enzyme luciferase from fireflies and is measured in a Victor2 Wallac 1420 multilabel counter spectrophotometer (Perkin-Elmer Life Sciences GmbH, Germany). Data analysis was performed using the Wallac 1420 workstation software Wallac 1420 Manager, version 2.00 (release 8; Perkin-Elmer Life Sciences GmbH). The photometer was equipped with two dispensers that were able to pump adjustable amounts of Tris buffer and luciferin-luciferase solution into the wells of the microtiter plate just before measurement of the samples.
Energy charge.
The adenylate energy charge was measured by using an energy charge kit from BioThema AB, Sweden. Besides ATP measurement by the luciferin-luciferase reaction, the conversion of ADP to ATP by pyruvate kinase and the conversion of AMP to ADP by myokinase were necessary to determine the energy charge (24). The adenylate energy charge (EC) is given by the following equation (3):
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Characterization of bacterial cell surface properties.
Physicochemical cell surface properties of bacteria were investigated by using standard methods, as described by others (43). The electrophoretic mobility (µ) of bacterial suspensions in 10 mM KNO3 at pH 6.2 was determined in a Doppler electrophoretic light scattering analyzer (Zetasizer Nano ZS; Malvern Instruments Ltd., Malvern, Worcestershire, United Kingdom) at 100 V. The zeta potential (
) was approximated from the electrophoretic mobility as an indirect measure of cell surface charge according to the method of Helmholtz-von Smoluchowski (12). The isoelectric points (IEPs) of bacteria were determined from
-pH plots obtained by measuring µ in 10 mM HNO3-KNO3 solutions, with pHs varying between 2 and 6.5, using an MPT-2 autotitrator (Malvern Instruments Ltd., Malvern, Worcestershire, United Kingdom).
Bacterial lawns needed for contact angle (
w) measurements were prepared by collecting cell suspensions in 10 mM KNO3 on 0.45-µm-pore-size Micropore filters (Schleicher & Schuell, Dassel, Germany), mounting the filters on glass slides, and drying them for 2 h at room temperature. Cells exposed to 1-decanol were washed six times with 10 mM KNO3. Cell surface hydrophobicities were derived from
w values for water drops on the bacterial lawns, using a DSA 100 drop-shape analysis system (Krüss GmbH, Hamburg, Germany) (43). According to an earlier classification, cells exhibiting contact angles of <20°, 20° to 50°, and >50° are hydrophilic, intermediately hydrophilic, and hydrophobic, respectively (34).
| RESULTS AND DISCUSSION |
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Astonishingly, the ATP contents in 5-liter batch fermentations, in contrast to the case in the experiment with energized resting cells, were even higher in the presence of 10% (vol/vol) 1-decanol. Figure 1B shows the development of the ATP contents of cells grown in 5-liter batch fermentations in the presence and absence of 1-decanol. At time zero, similar ATP concentrations were measured, showing ATP contents of 8 to 9 nmol/mg dry weight, which is similar to results found previously for aerobic bacteria (42).
These lower values for cells grown in fermentations without 1-decanol can be explained by decreasing specific ATP production at higher growth rates, indicating a higher energetic efficiency of carbon substrate utilization during fermentations in the absence of 1-decanol (17).
The time-dependent pattern of the ATP content of the cells was very similar for both experiments. In the first 2 h, the ATP concentration increased as the bacteria entered the exponential growth phase because of the abundance of sodium succinate and the relatively low demand for ATP for anabolic processes at this stage. In the exponential growth phase, upon limitation of the energy source for ATP formation through catabolic activities, the ATP concentration declined rapidly. The time point at which the minimum ATP concentration was reached coincided with the time point at which the cells entered stationary phase due to the exhaustion of the energy source (Fig. 1B). A similar curve was described by Muller et al. for the membrane potential (
) of cells of Acinetobacter calcoaceticus during growth on acetate as the carbon and energy source. The membrane potential, as part of the proton motive force which drives ATP synthesis, can be used as an indicator for the energetic state of living systems as well (28).
Since the ATP content by itself does not always reflect the actual energy status, the concentrations of the other adenine nucleotides and the adenylate energy charge, which allows an exact expression of the energetic level of the cells under different growth conditions, were measured and calculated, respectively (Fig. 1C). The energy charge of the cells showed no difference, regardless of the presence or absence of 1-decanol. Apparently, the complete adaptation of the cells of P. putida DOT-T1E to 1-decanol is reflected in the absence of differences in the bioenergetics of this microorganism during fermentations with and without 1-decanol.
A steep decline in the energy charge for fermentations both with and without 1-decanol was observed after 2 h. The reasons for this drop are the same as those for the decrease in the ATP concentration. The decline to ECs of
0.3 to 0.45 is comparable to the values described in the literature at which viability of the microorganisms is still maintained before the cells die (5, 23, 24).
When the energy source became limiting, the ATP concentration decreased, whereas the ADP and AMP concentrations kept increasing (data not shown). It could be concluded that ADP and AMP were formed from ATP because the sum of nucleotides was more or less constant. Chapman et al. described a stabilization of the energy charge at this growth stage by a reduction in the sum of nucleotides in a short period of continued synthesis of RNA in Escherichia coli and a late drop in the energy charge when this process is not possible anymore (5). However, this stabilization of the energy charge was not observed in P. putida DOT-T1E, resulting in an earlier drop in the energy charge (from an EC of
0.8 down to an EC of
0.3), when the cells were in the middle of their exponential growth phase, irrespective of the presence or absence of 1-decanol.
The results on the energetics of the cells were additionally supported by measurements of the cellular potassium concentration, where no significant differences could be observed between fermentations with and without 1-decanol (data not shown). Since leakage of potassium ions is an important parameter for determining membrane damage in the presence of toxins (21, 29), this indicated that the cell membranes also completely adapted to the presence of a second phase of 1-decanol. The cells were obviously able to maintain the appropriate ion gradients across the membrane that are necessary for effective ATP synthesis. From these results, it can be concluded that although the bacteria need additional energy for their adaptation to the presence of the solvent, they are able to maintain or activate their electron transport phosphorylation, allowing homeostasis of the ATP level and energy charge in the presence of the solvent, at the price of a reduced growth yield.
Physicochemical surface properties of cells adapted to the presence of 1-decanol.
Already in 1998 (6), modifications of surface properties by changing the compositions of the very outer layers of gram-negative bacteria were suggested as an adaptive response in solvent-tolerant bacteria to a second phase of a toxic organic compound. In order to evaluate the influence of a second phase of 1-decanol on physicochemical cell surface properties, the water contact angles (
w) (44) and zeta potentials (
) (43) were measured to describe the cell surface charge and hydrophobicity of P. putida DOT-T1E. To guarantee the measurement of the cell properties and concomitantly to avoid measurement interferences by the physicochemical effect of 1-decanol adhering to or accumulating in the cells, six washing steps with the harvested cell pellets and 10 ml of 10 mM KNO3 were carried out. After six or more washing steps, no changes in either
w or
were observed, indicating that all reversibly bound 1-decanol was washed out from the cells (data not shown).
The results of the surface property measurements for 5-liter fermentations are summarized in Fig. 2. Cells exposed to 1-decanol immediately showed significantly increased water contact angles (
w = 85°) about 50° above
w of cells growing in the absence of the solvent (
w = 37°) (Fig. 2A). Contact angles of the cells in the lag and early exponential phases of both types of cultures increased to 110° and 72° for cells grown in the presence and absence of 1-decanol, respectively. Cells grown in the presence and absence of 1-decanol were negatively charged, with the former (
= 30 mV) exhibiting (Fig. 2B) 15 mV more negative
potentials than the latter (
= 15 mV).
values decreased during the fermentations, to 50 mV (in the presence of 1-decanol) and 25 mV (in the absence of 1-decanol), correlating with corresponding changes of the water contact angle and supporting earlier observations by others describing a negative correlation between cell hydrophobicity and surface charge (26, 43, 44). Previous findings have demonstrated that the whole-cell IEP (i.e., the pH at which
becomes zero) is a suitable indicator for predicting the biochemical surface compositions of bacteria (34). Literature data demonstrate that IEPs of
2.8 indicate the presence of significant amounts of cell surface polysaccharides inhibiting adhesion to both hydrophobic and hydrophilic surfaces (34). Continuously more negative
values between pH 2 and pH 6.5 and no significant changes of the IEP were found in the absence and presence of the solvent (data not shown). The observed IEP of about 2.5 is lower than published IEPs for other Pseudomonas strains (34), possibly indicating the presence of significant amounts of cell surface polymers, such as lipopolysaccharides (LPS), in Pseudomonas putida DOT-T1E.
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potential (from about 15 mV to about 30 mV) (Fig. 2B) of cells grown in the presence of the solvent already at the beginning of the fermentations were surprising. It should be noted that in the fermenter experiments, the first samples (t = 0) were taken after filling of the fermenter with medium, which took about 30 min, during which the cells were already in contact with 1-decanol. This led to the question of whether the measured changes reflect physiological changes or if they were caused by (abiotic) physicochemical interactions of 1-decanol with the cell wall. Therefore, a series of batch experiments with cells that had previously been treated with lethal concentrations of HgCl2 (0.1 mM) were carried out. HgCl2 is known to lead to cell death without having an effect on the physical and chemical properties of cell surfaces. A HgCl2 concentration of 0.1 mM led to a complete loss of viability of the cells (data not shown). 1-Decanol was added to the cells after 30 min of incubation with HgCl2 (Fig. 3). After the addition of 1-decanol to living cells, the contact angle of the cells increased drastically, from 27° to 85°, after an initial delay of several minutes (Fig. 3A). In contrast, dead cells showed only a moderate but much more rapid increase, to 48°. This is a clear indication that the observed increase in the hydrophobicity of cells grown in the presence of 1-decanol was caused by physiological changes that could only be carried out by living cells, as opposed to the much faster physicochemical effect which is seen and expected for dead cells. Nearly the same effect was measured for the
potential (Fig. 3B). In this case, the living cells also showed a slower response than the dead cells, but with a greater final decrease in the
potential.
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In this study, it was proven for the first time that changes in surface properties as a cellular response to stress also occur as an adaptive mechanism to the presence of toxic organic solvents. The very fast physiological response can be explained by the formation of membrane vesicles, mainly consisting of B-band LPS, that lead to a fast and drastic increase in the hydrophobicity of the cells (15, 36).
The major component in gram-negative cells that affects surface properties such as charge and hydrophobicity is the composition of the LPS layer of the outer membrane. The so-called O-specific region on the very outer cell surface especially has an effect on surface properties. In the LPS of Pseudomonas aeruginosa, the O-specific region contains two major components. The A band, a low-molecular-mass LPS, consists of a homopolymer of D-rhamnose, with only minor amounts of 2-keto-3-deoxyoctonic acid. The B band, a high-molecular-mass LPS, consists of a heteropolymer of mainly uronic acid derivatives and N-acetylfucosamine. The rapidly occurring complete loss of B-band LPS upon stress compared to the amounts of A-band LPS present on the surface has been shown to affect surface charge, surface hydrophobicity, adhesion to hydrophobic surfaces, biofilm formation, and susceptibility to antimicrobial agents and host defense (18). In addition, one investigated solvent-tolerant strain, P. putida Idaho, changed its LPS composition when grown in the presence of o-xylene. A higher-molecular-weight LPS band disappeared and was replaced by a lower-molecular-weight band in the presence of the aromatic compound (31).
In Pseudomonas aeruginosa, the quantity of LPS was reported to be high in the initial phases of growth but then to decrease significantly to constant levels in the stationary phase. A strong increase in the yield of LPS in the mid- and late exponential growth phases was observed (46).
P. aeruginosa is known for being able to alter the LPS composition of its surfaces very rapidly. This takes place as a response to high temperature (45°C) (27) but also in response to other environmental stress factors, such as the presence of the membrane-active antibiotic gentamicin (16) and to oxygen stress (36).
Indeed, for mutants of Escherichia coli showing higher tolerance towards solvents, the hydrophobicities of cell surfaces have been reported to decrease (1). However, an explanation for the physiological advantage of a more hydrophobic cell surface as an adaptive response to the presence of a very hydrophobic solvent seems very difficult. This had already been discussed in 1998 by de Bont (6), who had assumed a decrease in cell hydrophobicity in order to repel the solvent. The outer membrane is known to be a very good barrier for hydrophobic compounds. This very low permeability for hydrophobic compounds is usually more affected by the outer membrane porins than by variations in the LPS content. However, taking into consideration that the major mechanism creating the phenotype of highly solvent-tolerant bacteria is the presence of at least three efflux pumps (39) that permanently remove the toxic solvents from the cytoplasmic membrane and transport them to the outer layer of the outer membrane, the observed modification of the surface properties makes sense because this hydrophobic layer is able to take up more of the solvents.
Additionally, the release of solvent-containing membrane vesicles was discussed as a mechanism of adaptation to toxic solvents (19). A detailed study of the LPS content of P. putida DOT-T1E growing in the presence and absence of 1-decanol, including antibodies for the different LPS bands, will be carried out in the near future.
Bacteria belonging to the genus Pseudomonas are famous not only because of their high solvent tolerance but mainly because of their capability of degrading a wide range of pollutants, even at very low concentrations. Also, in the presence of nontoxic crude oil components, such as hexadecane, an increase in cell hydrophobicity has been observed (30). The major reason for this change in surface properties seems to be an increased adhesion to the surfaces of very poorly water-soluble compounds that leads to an increase in the bioavailability of the compounds (49, 50). As in adaptation to poorly water-soluble substrates, uptake systems seem to also be involved, because a hydrophobic surface also works as a kind of source for the compounds that accumulates them at the cell surface and allows better uptake (2). Thus, a more hydrophobic surface can work as a kind of sink for toxic concentrations of solvents that are excluded by efflux pumps but also as a kind of source for less bioavailable substrates that are transported into the cells by several uptake systems.
P. putida DOT-T1E and other highly solvent-tolerant bacteria were shown to be capable of adapting to the presence of very toxic solvents, such as toluene or 1-decanol, without being highly affected in their growth properties and cellular energetics. Thus, these bacteria can be handled at technical scales for the production of fine chemicals of interest in high, economically sound concentrations (13, 47). Since these strains are also very accessible to genetic modifications and the introduction of foreign genes, a wide range of products can be synthesized by using a two-phase biotransformation system.
| ACKNOWLEDGMENTS |
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We thank Karin Lange, Jana Reichenbach, Rita Remer, Birgit Würz, and Andreas Zehnsdorf (all UFZ) for their help with the experiments.
| FOOTNOTES |
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