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Applied and Environmental Microbiology, June 2006, p. 4492-4496, Vol. 72, No. 6
0099-2240/06/$08.00+0 doi:10.1128/AEM.02543-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Overproduction of Wild-Type and Bioengineered Derivatives of the Lantibiotic Lacticin 3147
Paul D. Cotter,1
Lorraine A. Draper,1
Elaine M. Lawton,1
Olivia McAuliffe,2
Colin Hill,1,3* and
R. Paul Ross2,3
Department of Microbiology, University College Cork, Cork, Ireland,1
Teagasc Dairy Products Research Centre, Moorepark, Fermoy, County Cork, Ireland,2
Alimentary Pharmabiotic Centre, Cork, Ireland3
Received 28 October 2005/
Accepted 26 March 2006

ABSTRACT
Lacticin 3147 is a broad-spectrum two-peptide lantibiotic whose
genetic determinants are located on two divergent operons on
the lactococcal plasmid pMRC01. Here we introduce each of 14
subclones, containing different combinations of lacticin 3147
genes, into MG1363 (pMRC01) and determine that a number of them
can facilitate overproduction of the lantibiotic. Based on these
studies it is apparent that while the provision of additional
copies of genes encoding the biosynthetic/production machinery
and the regulator LtnR is a requirement for high-level overproduction,
the presence of additional copies of the structural genes (i.e.,
ltnA1A2) is not.

INTRODUCTION
Lantibiotics are posttranslationally modified antimicrobial
peptides produced by gram-positive bacteria (
5,
9). The enormous
chemotherapeutic potential of these peptides stems from the
fact that a number of lantibiotics have been found to be active
at nanomolar concentrations (
3,
23), can inhibit multidrug-resistant
pathogens (
4,
13,
18), and are among a rare group of antibacterial
compounds that target the lipid II component of the bacterial
cell wall (
2,
3). However, the study and application of lantibiotics
are often compromised by limited production of these peptides
by the native producer. This problem is particularly notable
when working with bioengineered derivatives (
8). While the optimization
of fermentation processes is one option, genetic strategies
offer an alternative approach which has already proved successful
in the case of nisin and subtilin (
6,
15). These studies demonstrated
that the provision of additional copies of the regulatory (
RK)
or immunity [(
I)
FEG] genes resulted in 1.5- to 1.7-fold-greater
yields of the relevant lantibiotic (
6,
15). Furthermore, deletion
of the
Bacillus subtilis general regulator AbrB brought about
an extraordinary sixfold enhancement in subtilin yields, although
unfortunately this was in a less active, succinylated form (
15).
Here we describe a genetic system that facilitates significant
overproduction of both wild-type and bioengineered derivatives
of the broad-spectrum, two-peptide lantibiotic lacticin 3147
through the provision of additional copies of the genes responsible
for production of, and immunity to, this antimicrobial. Through
the use of 14 different subclones we also established that although
the provision of additional copies of the biosynthetic/transport
genes and of the regulator LtnR was required for high-level
overproduction, the presence of additional copies of the two
structural genes (
ltnA1A2) was not.

Creation of constructs to facilitate lacticin 3147 overproduction.
The genes responsible for production of and immunity to lacticin
3147 span a 12.6-kb region on the 60.2-kb plasmid pMRC01, originally
identified in
Lactococcus lactis DPC3147 (Fig.
1) (
28). These
genes are present on two operons, i.e.,
ltnRIFEan immunity
operon including genes for a regulator (
ltnR), an immunity protein
(
ltnI), and an ABC transporter (
ltnFE)and
ltnA1A2M1TM2Ja
biosynthetic operon with genes for the two structural peptides
(
ltnA1A2) and for proteins involved in posttranslational modification
(
ltnM1M2J) and transport/processing (
ltnT) (
10,
12,
20-
22,
27).
It has already been reported that a subclone containing all
10 genes on a high-copy-number vector (pOM02) does not lead
to higher production of lacticin 3147 than that observed from
the low-copy-number parent plasmid pMRC01 (
20). In this study,
we sought to determine whether the introduction of the cloned
region into a background containing the parent plasmid would
lead to improved production. To this end, pOM02 was introduced
(
17) into
L. lactis MG1363(pMRC01). Once it was established
that the colocalization of pMRC01 and pOM02 in MG1363 did not
impact the copy number of either plasmid (E. O'Connor, unpublished
data), the antimicrobial activities of this strain and of MG1363
(pMRC01) were compared using a method described previously (
28).
This involved serial dilution of cell-free supernatant, from
antibiotic-free overnight cultures (4
x 10
8/ml), in one-fourth-strength
Ringer's solution and the addition of 50-µl volumes of
these dilutions to 4.6-mm wells bored in agar plates seeded
with approximately 10
6 cells of overnight-grown indicator bacteria
(
Lactococcus lactis HP)/ml. After overnight incubation of the
plate, activity was determined and expressed as arbitrary units/ml
(AU/ml), i.e., the reciprocal of the highest dilution which
gave a definite zone multiplied by the conversion factor (i.e.,
20 when 50 µl was used). For simplicity, data are presented
as relative activity, i.e., activity relative to that of MG1363(pMRC01).
It was found that the activity of the MG1363(pMRC01, pOM02)
derivative was dramatically higher (400% activity) than that
of the strains containing either plasmid alone (100% activity)
(Fig.
1). To determine more specifically which of the genes
introduced into pOM02 were responsible for this overproduction,
we created a set of different subclones that were introduced
into MG1363(pMRC01) (Table
1). PCR amplification was carried
out with the Expand High-Fidelity Polymerase system (Roche)
or KOD (EMD Biosciences), and restriction enzymes and T4 DNA
ligase were purchased from Roche. The sequences of primers are
shown in Table
2. Some of these subclones have been described
previously (
20,
21), while others were made during the course
of this study (Table
1; Fig.
1). The plasmids were initially
created in
Escherichia coli DH5

or XL1 and subsequently introduced
into
L. lactis MG1363 (pMRC01) by electroporation. Transformants
were selected on M17 agar (Oxoid) with 0.5% glucose (GM17) and
5 µg/ml chloramphenicol.
Agar well diffusion assays were again performed on all strains.
It was apparent that, with the exceptions of pOM27 (which lacks
all biosynthetic genes), pPC

T (which lacks
ltnT), and pDF01
(carrying structural genes only), all of the constructs facilitated
lacticin 3147 overproduction at least to some extent. While
the addition of pOM02 containing all 10 genes resulted in the
highest levels of antimicrobial activity, the strain containing
pMRC01 and pOM44 (which contains all
ltn genes except
ltnA1A2)
also displayed high relative bioactivity (350%; Fig.
1). Although
percent overproduction was lower in all other cases, the results
generated gave an insight into the relative importance of each
of the genes in contributing to overproduction. The assays revealed
that even in the absence of additional copies of
ltnFE (pOM25)
and
ltnI (pOM40), respective two- and threefold increases in
activity were apparent. Although it has yet to be established
definitively that LtnFE contribute to lacticin 3147 immunity,
it may be that an inability to tolerate increased levels of
lacticin 3147 limits the ability of these strains to overproduce
the lantibiotic as efficiently as MG1363(pMRC01, pOM02). The
absence of
ltnR (pOM34), a negative regulator of the
ltnRIFE operon (
22), resulted in more limited overproduction (175%).
It has previously been established that MG1363(pOM34) exhibits
activity which is approximately 50% of that of MG1363(pOM02)
(
22). The cause of this reduced activity has yet to be ascertained.
When individual genes involved in biosynthesis/transport were
absent from the newly introduced subclones, it was apparent
that the presence of
ltnT (pPC

T; 100%) and
ltnJ (pOM28; 125%)
was important. Based on homologies with other LanT enzymes,
LtnT is responsible for the transport of the lacticin 3147 peptides
from the cell and the concomitant removal of the leaders. Although
it has been established that LctT is dispensable for lacticin
481 production (
26,
29), the inactivation of
mutT abolishes
mutacin II production (
7). LtnJ is required for the presence
of
D-alanine residues in LtnA1 and LtnA2, and an MG1363(pMRC01
ltnJ)
mutant has previously been shown to exhibit little antimicrobial
activity (
10). Overproduction was limited to between 175 and
250% as a consequence of not introducing additional copies of
ltnM1 and/or
ltnM2 (pOM18, pOM32, and pOM51). LtnM1 and LtnM2
are required for the production of fully modified LtnA1 and
LtnA2, respectively (
20). Previously an attenuator that impacts
on the levels of
ltnM1TM2J transcript was identified. Its presence
undoubtedly impacts the levels of biosynthetic/transport proteins
and may explain why the provision of additional copies of the
corresponding set of genes is beneficial. In contrast, the presence
of additional copies of the structural genes is not essential
for overproduction. Curiously, while the benefits of adding
pOM44 (
ltnA1A2) were great, these benefits were almost eliminated
when only one of the structural genes was missing (pOM31/39;
both 125%). It may be that, as a consequence of an uneven balance
of substrate, one of the enzymes that is involved in the modification/production
of both peptides, i.e., LtnT or LtnJ, functions less efficiently.
Taken in combination these results indicate that while the presence
of additional copies of the biosynthetic/transport machinery
and LtnR is required for high-level overproduction, there is
no single bottleneck that can be relieved by the addition of
a particular gene product.
The observation that overproduction can be achieved in the absence of the wild-type structural genes from pOM44 presented the possibility that this construct could facilitate the overproduction of bioengineered LtnA1 and LtnA2 derivatives. To test this theory, pOM44 was introduced into a strain containing a pMRC01 derivative in which the serine at position 7 in LtnA1 (normally converted to a D-alanine in the mature peptide) is replaced with an L-glycine (10). It has previously been established that although the A1S7G peptide has only 50% of the relative activity of the parent peptide, its further characterization was hampered by a 94% decrease in its production (10). It was apparent from cell-free supernatant assays that the activity associated with supernatant from the strain containing pOM44 was increased twofold (40 versus 20 AU/ml), a small but significant increase.

Quantification of lacticin 3147 overproduction.
While the antimicrobial assays described above allowed us to
determine the relative benefits of adding different constructs,
the relationship between peptide concentration and antimicrobial
activity as ascertained by the well diffusion assay is not always
linear (
11). To more accurately quantify the production of LtnA1
and -A2 from the strains of greatest interest, the lacticin
3147 peptides were purified from the surface of selected strains
and quantified by quantitative reverse-phase high-pressure liquid
chromatography (RP-HPLC) as described previously (
10) (Fig.
2). The purification of LtnA1 and LtnA2 in this way results
in greater peptide yields and overcomes the problems associated
with contaminating peptides from culture media, which hamper
the quantification of the lacticin 3147 peptides obtained from
cell-free supernatant. Relative to the yield from MG1363 containing
pMRC01 alone, the yield of LtnA1 from strains also containing
pOM44 or pOM02 was 1.45- and 2.74-fold greater, respectively,
while the yields for LtnA2 were 1.48- and 6.62-fold greater,
respectively. Mass analysis (matrix-assisted laser desorption
ionization-time of flight mass spectroscopy) using an AXIMA-CFRplus
mass spectrometer (Shimadzu Biotech, Manchester, United Kingdom)
demonstrated that the masses of LtnA1 (3,305 kDa) and LtnA2
(2,847 kDa) were as expected in all cases (data not shown),
indicating the absence of unexpected modifications. It is curious
that pOM02 led to differential overproduction of LtnA1 and LtnA2.
In MG1363(pMRC01) and MG1363(pMRC01, pOM44), the ratios of LtnA1
to LtnA2 are similar in that there would appear to be significantly
more LtnA1 than LtnA2 present. This trend was also apparent
when the corresponding peptides were purified from the related
two-peptide lantibiotics staphylococcin C55 and plantaricin
W (
16,
24). The reason for this is not apparent, but it is surprising
given that these peptides function in a 1:1 ratio. However,
the fact that this trend exists may explain the differential
overproduction of the two peptides in MG1363(pMRC01, pOM02),
in that because the levels of LtnA2 being produced by the parental
strain are relatively low, there is simply more room for improvement.
Conversely, as the quantities of LtnA1 that are produced by
MG1363(pMRC01) are relatively high, it may be that the MG1363(pMRC01,
pOM02) strain is producing the maximum amount of LtnA1 that
the cell can either facilitate or tolerate.
RP-HPLC analysis also revealed that the yield of A1
S7
G from
the strain possessing pOM44 was more than twofold greater than
that from the strain lacking the construct. The masses of the
peptides produced were also as expected (A1S7G, 3,291 kDa; LtnA2,
2,847 kDa). It should be noted that despite being more difficult
to quantify accurately, the trends with respect to peak sizes
from cell-free supernatant preparations mirrored those shown
for cell preparations in all cases (data not shown).

Concluding remarks.
With respect to the contributions of individual components to
lacticin 3147 overproduction, it has been demonstrated that
one of the requirements for overproduction of both peptides
of the lantibiotic lacticin 3147 is the introduction of additional
copies of biosynthetic and transport genes into an existing
lacticin producer. This suggests that one of the rate-limiting
steps for lacticin 3147 production in the pMRC01-containing
host is the abundance of modification and transport proteins
but not substrate availability (i.e., unmodified peptides).
These observations again raise questions about the role of the
stem-loop attenuator that impacts transcription of the genes
in question. The presence of a stem-loop structure between the
structural gene and the downstream biosynthetic genes is a feature
of a number of other lantibiotics (
1,
19,
25). It has been established
that in addition to allowing partial read-through to downstream
synthetic genes, the stem-loop structure in Pep5 is also required
for mRNA stability (
25). It may be that further investigations
are needed to determine whether mutagenesis of such structures
in a way that improves read-through without impacting mRNA stability
could facilitate lantibiotic overproduction. pOM34 (
ltnR) is
the only construct that contains all of the biosynthetic/transport
genes and yet fails to improve the activity of MG1363 by at
least 200%. To date, analysis of LtnR has focused on its role
as a negative regulator of immunity gene expression. In light
of these results, further analysis to determine how it directly
or indirectly contributes to lacticin 3147 production would
appear to also be merited.
This study represents the first occasion on which non-nisin-like antibiotics have been overproduced by genetic means. The extent to which overproduction occurs, i.e., 2.74-fold for LtnA1 and 6.62-fold for LtnA2, is greater than what has been observed for wild-type nisin or subtilin peptides. In fact, LtnA2 overproduction is also more dramatic than the abrB deletion-associated production of succinylated subtilin. Significantly, although deletion of abrB is an option available only to subtilin-associated applications, the subcloning of entire operons in a manner analogous to that described here for lacticin 3147 is, with the increasing availability of polymerases suited to the amplification of large products with high fidelity, a realistic option when endeavoring to overproduce other lantibiotics. As many of these peptides are of great fundamental interest and show great potential with respect to either food or clinical applications, this is particularly worthwhile. The development of the related strategy to facilitate the overproduction of bioengineered derivatives is also significant, as the low-level production of many bioengineered lantibiotics can present a major hurdle to their further characterization and utilization. While a number of new strategies involving either in vitro or heterologous production are being investigated, it remains to be seen whether they will be successful in producing large quantities of correctly modified peptide. The overproduction of a bioengineered lantibiotic for the first time is thus a welcome event.

ACKNOWLEDGMENTS
We acknowledge Paula O' Connor for technical assistance, Eileen
O'Connor for sharing unpublished data, and Desmond Field for
plasmid pDF01.
This work was supported by the Irish Government under the National Development Plan (2000-2006) and Science Foundation Ireland.

FOOTNOTES
* Corresponding author. Mailing address: Department of Microbiology, University College Cork, Cork, Ireland. Phone: 353-21-4901373. Fax: 353-21-4903101. E-mail:
c.hill{at}ucc.ie.


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Applied and Environmental Microbiology, June 2006, p. 4492-4496, Vol. 72, No. 6
0099-2240/06/$08.00+0 doi:10.1128/AEM.02543-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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