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Applied and Environmental Microbiology, July 2006, p. 4845-4852, Vol. 72, No. 7
0099-2240/06/$08.00+0 doi:10.1128/AEM.00279-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Laboratoire de Microbiologie et de Biochimie Appliquées, Ecole Nationale d'Ingénieurs des Travaux Agricoles de Bordeaux, 1 Cours du Général de Gaulle, CS40201, F-33175 Gradignan, France,1 Unité de Virologie et Immunologie Moléculaires, INRA, Domaine de Vilvert, F-78352 Jouy-en-Josas, France,2 Clear Springs Foods, Inc., Research Division, Buhl, Idaho,3 Laboratoire de Biotechnologie et Microbiologie Appliquée, Université Victor Segalen Bordeaux 2 UMR INRA, Faculté d'Oenologie, 351 Cours de la Libération, F-33405 Talence, France,4 Plateforme Génomique Fonctionnelle, Université Victor Segalen Bordeaux 2, 146 Rue Léo Saignat, F-33076 Bordeaux, France5
Received 3 February 2006/ Accepted 29 April 2006
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The molecular pathogenesis of F. psychrophilum is not well understood. However, the virulence of this flavobacterium might be related to the production of exoenzymes and/or endotoxins causing direct tissue damage in fish or enhanced invasiveness (13, 29, 43, 44). Little knowledge about the surface immunogenic factors of F. psychrophilum exists. What is known are the structures of the lipopolysaccharide O antigen (28) and some surface components, such as sialic acid-binding lectin (33) or surface blebs (34), which have been shown (or suspected) to interact with the immune system of the host. No commercial vaccine is yet available, although several studies dealing with the effects of vaccination have been done. Vaccines based on whole formalin-killed cells (19), a Sarkosyl-insoluble membrane fraction (38), or distinct molecular mass fractions (25) of F. psychrophilum were shown to confer significant protection against disease. To date, the prevention of disease outbreaks and therapeutic treatments rely on the use of approved antibiotics. However, such an approach is limited by the cost of the treatments and the potential for resistant mutants (9, 18, 42).
The identification of the major immunogenic components of an infectious agent is essential for understanding the molecular mechanism of virulence and the route of the infection, for proposing serological diagnosis of the disease, and for developing strategies for efficient immune protection. Bacterial surface components and, more particularly, the outer membrane proteins are generally very immunogenic and play a key function in virulence and the immune responses to bacterial diseases. In this context, investigations of the surface architecture of F. psychrophilum led to the identification of several dominant membrane antigens (11, 12, 31, 38) which might be used as antigenic subunits for vaccines. Because of the important role that membrane proteins play in attachment of many pathogenic bacteria to their hosts, we hypothesized that flavobacterial outer membrane proteins are likely candidates for mediating the specific attachment of these pathogens to their fish tissues. Previously, we identified two proteins produced by F. psychrophilum, termed P60 (31) and P18 (30) according to their relative molecular masses. In this study, we report the purification and characterization of the immunogenic and protective 18-kDa outer membrane-associated OmpH-like protein. This surface protein seems to be a promising candidate for the development of a future vaccine.
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TABLE 1. F. psychrophilum strains and related type strains used in this study
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SDS-PAGE and immunoblotting.
SDS-PAGE analyses were performed as described by Laemmli (22). Protein samples were solubilized in a reduced SDS-PAGE sample buffer and separated in SDS-polyacrylamide gels (10 by 8 by 0.075 cm; 12.5% acrylamide and 0.26% bisacrylamide; 200 V, 1 h). Protein bands were stained with silver (45) or Coomassie brilliant blue R250 or were immunolabeled. Following electrophoresis, the proteins were electroblotted onto a nitrocellulose filter (Bio-Rad) by use of a Bio-Rad TransBlot electrophoretic transfer cell as specified by the manufacturer. The blots were blocked with 5% bovine serum albumin in PBS for 1 h at room temperature and then incubated for 1 h with rabbit antiserum directed against P18 purified from F. psychrophilum G4 (dilution, 1:1,000) in 0.05% Tween 20 in PBS. The washing steps were performed three times with PBS. Immunolabeled proteins were visualized using alkaline phosphatase-conjugated anti-rabbit immunoglobulin G (IgG) antibodies (dilution, 1:2,000; DakoCytomation, Glostrup, Denmark), followed by a color reaction with 5-bromo-4-chloro-3-indolyl phosphate and 4-nitroblue tetrazolium chloride. Primary antibodies were elicited in two rabbits (female New Zealand White rabbits) by subcutaneous inoculation of HPLC-purified P18 twice a month over a 3-month period (inoculum, 50 µg of P18 in 0.5 ml of PBS, emulsified with 0.7 ml of Freund's incomplete adjuvant [or complete adjuvant for the two first inoculations]). The two sera were pooled at the end of the immunization schedule. When trout antisera from (i) CWD-convalescent trout taken from an infected French farm or (ii) experimentally immunized trout (see below) were used as primary antibodies, an additional incubation was done with rabbit anti-trout immunoglobulins (dilution, 1:2,000).
De novo P18 sequencing.
Purified P18 was electrophoresed and stained with Coomassie brilliant blue R250, and the spots were excised from a gel. After a washing step with H2O-methanol-acetic acid (47.5:47.5:5) and acetonitrile, the gel pieces were dried in a vacuum centrifuge and rehydrated in 8 ng/µl trypsin (Sigma-Aldrich, St. Louis, MO) in 50 mM NH4HCO3. After incubation and washing steps, peptide mixtures were analyzed by online capillary chromatography (C18 PepMap column [75-µm inner diameter by 15 cm]; LC Packings, Amsterdam, The Netherlands) coupled to nanospray LCQ ion-trap mass spectrometry (MS; ThermoFinnigan, San Jose, CA). The mass spectrometer was operated in positive-ion mode at a 2-kV needle voltage and a 46-V capillary voltage. Data acquisition was performed in a data-dependent mode alternating full-scan MS over the range m/z 50 to 2,000 and a MS/MS scan of the most intense ion in the precedent MS spectrum. MS/MS data were acquired using a 2-m/z-unit ion isolation window and a 35% relative collision energy. Every MS/MS spectrum was submitted to the DeNovoX sequencing program (ThermoFinnigan, San Jose, CA). Sequences with an absolute probability and relative probability higher than 20% and 75%, respectively, and consisting of more than four amino acids were selected for further analysis. Corresponding spectra were manually checked.
In situ protease treatment.
Intact mid-log-phase F. psychrophilum cells were washed once with PBS and dispersed in PBS with 10 mM MgCl2 to a final concentration of 2 x 109 bacteria/ml. Examination of bacterial suspensions by phase-contrast light microscopy did not indicate detectable lysis of the bacteria. Cells were then incubated with 40 µg/ml soluble proteinase K for 30 min or 1 h at 25°C, after which digestion was terminated by the addition of 5 mM phenylmethylsulfonyl fluoride followed by sample boiling. As a negative control, the above procedure was repeated except that cells were incubated in buffer without proteinase K. Cells were disrupted by sonication (24 W), and about 50 µg of proteins was prepared from each sample. Bacterial lysates were subjected to SDS-PAGE, and the proteins were transferred to nitrocellulose membranes. The susceptibilities of individual proteins to proteinase K digestion were assessed by immunoblotting with the appropriate rabbit polyclonal antibodies. To exclude the possibility of outer membrane damage, the lysates were also immunoblotted with antibodies directed against GldJ, a lipoprotein involved in the gliding mobility of Flavobacterium johnsoniae which is not exposed at the cell surface and is thus protected against protease digestion in intact bacteria (8). To assess the protease susceptibilities of the proteins when not in situ, an additional control was added. Cells were treated with proteinase K as described above in the presence of Triton X-100 to a final concentration of 0.05%, which disrupts F. psychrophilum membranes.
Growth inhibition by anti-P18 antibodies.
F. psychrophilum G4 was grown to mid-exponential phase, and a 10-µl aliquot (about 50 x 106 bacteria/ml) was placed in each well of a 96-well tissue culture dish (Techno Plastic Products, Trasadingen, Switzerland). Growth inhibition tests were performed by inoculating 200 µl of twofold serial dilutions of decomplemented (56°C, 30 min) anti-P18 polyclonal rabbit antiserum in AOAE medium. Growth was determined spectrophotometrically. The growth inhibition titer was the reciprocal of the highest dilution at which no absorbance variation was observed after 4 days of incubation at 18°C. Culture aliquots were also examined at that time by phase-contrast light microscopy for the formation of immobile bacterial aggregates. Alternatively, fetal calf serum was added (5% [vol/vol]) to visualize the cell lysis due to complement activation. As negative controls, cells were also cultivated as described above in medium supplemented with PBS (5% [vol/vol]) or with preimmune rabbit antiserum. The viability of the cells was evaluated by using a LIVE/DEAD BacLight bacterial viability kit (Molecular Probes, Eugene, Oreg.) according to the manufacturer's instructions. The stained cells were observed by fluorescence microscopy (Olympus BX40; magnification, x1,000). The living and dead cells were counted in 10 areas, and the proportion of viable cells was calculated as a percentage of all the cells. Experiments were performed in triplicate, and values are expressed as means ± standard deviations. Statistical analysis was performed by one-way analysis of variance (ANOVA) on square root-transformed data, and pairwise comparisons were made using Bonferroni's test. Differences were considered significant at P values of <0.05.
Vaccination, challenge trials, and trout antibody quantification.
Immunization trials were conducted on rainbow trout groups (20 fish per group; mean weight, 2.8 g). Fish were anesthetized with 100 µg/ml tricaine methane sulfonate (MS-222; Argent, Redmond, WA) and immunized intraperitoneally with 50 µl of P18-enriched fraction (P18-EF), with or without Freund's complete adjuvant (FCA) (approximately 7 µg and 14 µg of protein, respectively). The remaining treatments included fish injected with 50 µl of buffer (PBS) with and without FCA. At 9 and 14 weeks postimmunization, rainbow trout were challenged with live F. psychrophilum 259-93 cells as described previously (24). A single 20-fish group for each treatment was mock infected and served as a negative control group. The fish were monitored for 28 days after challenge for mortality. A minimum of 20% of the fish that died each day were cultured on tryptic yeast extract agar in an attempt to reisolate F. psychrophilum and confirm the cause of death. The cumulative percent mortality (CPM) was determined after 28 days, and the relative percent survival (RPS) was calculated using the following equation: RPS = [1 (CPM of immunized trout)/(CPM of PBS-injected trout)] x 100.
Sera from the mock-infected control rainbow trout were collected at the end of the challenge, and the F. psychrophilum-specific antibody titers were determined by enzyme-linked immunosorbent assay (ELISA) as previously described (23). An analysis of differences in serum ELISA antibody titers between treatment groups was performed by one-way ANOVA on log10-transformed titer data, and pairwise comparisons were made using Dunnett's multiple comparison test. The mean cumulative percent mortality following bacterial challenge was analyzed by ANOVA using Tukey's test. Differences were considered significant at P values of <0.05.
DNA manipulation and nucleic acid sequencing.
Standard procedures were used to isolate genomic DNA and to clone and analyze DNA fragments (39). Restriction enzymes, T4 DNA ligase, extensor Hi-Fidelity PCR enzyme, and deoxynucleotides were obtained from Promega or ABgene and used according to the instructions of the suppliers. Nucleic acid sequencing was performed by a standard protocol (Genome Express, Meylan, France). All reported DNA sequence data were confirmed by sequencing both DNA strands from at least two independent cloned PCR products. Comparisons to database sequences were made by using the BLAST (1) and FASTA (37) algorithms. Multiple sequence alignment was performed by the ClustalW program. A prediction of membrane-spanning regions and their orientations was performed using the TMpred program (16). The method of Kyte and Doolittle was used to analyze hydrophobicity (21). Signal peptide prediction was done with SignalP 3.0 software (4, 36). Protein homology searches were carried out with the SWISS-PROT database with the EMBL BLAST and EMBL FASTA servers.
Nucleotide sequence accession numbers.
The sequences reported in this paper have been deposited in the EMBL database under accession no. AM161038, AM161039, AM161040, AM161041, and AM161042.
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FIG. 1. SDS-PAGE analysis of F. psychrophilum G4 proteins. Samples were whole cell proteins (10 µg) solubilized with 1% SDS (lane 1), proteins released after treatment (10 min, 65°C) of the cells with 10 mM HEPES-NaOH (pH 7.5) (lane 2), and HPLC-purified P18 (lane 3). Protein bands were silver stained.
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TABLE 2. Purification of P18 from intact cells of F. psychrophilum G4
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FIG. 2. Proteinase K sensitivities of P18 and GldJ in 2 x 109 intact F. psychrophilum G4 cells in the absence () or presence (+) of 0.05% Triton X-100. After incubation with proteinase K for 0, 30, or 60 min at 25°C, cells were lysed in 1% SDS. Protein samples were then analyzed by SDS-PAGE, and immunoblots were developed with anti-P18 or anti-F. johnsoniae GldJ rabbit serum.
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FIG. 3. Identification of antigen P18 of F. psychrophilum G4 by Western blotting. Samples were whole cell proteins (20 µg; lanes 1, 2, and 3) and HPLC-purified P18 (5 µg; lane 4) solubilized with 1% SDS. Protein bands were silver stained (lane 1) or probed with rabbit serum directed against HPLC-purified P18 (lane 2) or with a serum collected from a CWD-convalescent trout (lanes 3 and 4).
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FIG. 4. Immunoblot of membrane proteins of eight different strains of F. psychrophilum. Samples were 20 µg of membrane proteins from strains G4 (lane 1), PO388 (lane 2), JIP02.86 (lane 3), JIP16.00 (lane 4), JIP07.99 (lane 5), UCD95.74 (lane 6), NCIMB 1947T (lane 7), and FPC839 (lane 8), revealed with a hyperimmune rabbit antiserum directed against P18.
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FIG. 5. Western blot analysis of a selection of representative serum samples collected from rainbow trout immunized with a P18-enriched fraction obtained through heat/HEPES treatment of F. psychrophilum G4, either not supplemented (lanes 1 to 4; dilution, 1:200) or supplemented with FCA (lanes 5 to 9 and 11; dilution, 1:2,000), or injected with PBS+FCA as a negative control (lane 10; dilution, 1:50). Sample proteins were F. psychrophilum G4 crude SDS extract (lanes 1 to 10; 10 µg of proteins/well) or HPLC-purified P18 (lane 11; 5 µg). The protein sample was digested with proteinase K for 1 h at 37°C prior to solubilization and SDS-PAGE (lane 9).
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TABLE 3. Protection of vaccinated rainbow trout following challenge with F. psychrophilum 259-93a
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FIG. 6. Bacteriostatic and bactericidal activities of anti-P18 antibodies toward F. psychrophilum G4 during in vitro growth. The growth medium was supplemented with the following: , PBS (5% [vol/vol]); , anti-P18 preimmune serum (1:200); , fetal bovine serum containing complement (5% [vol/vol]); , anti-P18 decomplemented serum (1:200); , anti-P18 decomplemented serum (1:200) and fetal bovine serum containing complement (5% [vol/vol]). Values are expressed as means ± standard deviations (n = 3 per treatment). Different superscripts indicate significant differences, with P values of <0.05.
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P18 sequencing and identification of the ompH-like gene sequence.
For further characterization of P18, the protein was subjected to de novo sequencing. Several peptides were identified, among which the following two sequences were found: (i) TEYGTMVTEY and (ii) ATTATEAI. These peptides were searched against an ongoing genome sequence of F. psychrophilum strain JIP02.86 (INRA, Jouy-en-Josas, France). Both peptides matched (100% identity) an OmpH-like protein encoded by one gene belonging to a cluster of six genes, including two genes for additional probable outer membrane proteins (Fig. 7A). Protein identity was ascertained by submitting MS/MS data obtained with P18 to a search against a database harboring the OmpH-like protein sequence. Two highly conserved genes within the CFB phylum (uppS [di-trans,poly-cis-decaprenylcistransferase] and murI [glutamate racemase]) belonging to the locus/operon were used to design primers for amplification of the whole locus. They were (i) uppS_fw (CATTATTATGGACGGGAATGG) and (ii) murI_rev (GCCGCCTATTCCTGAATCGAA). Using PCR, the ompH gene and surrounding regions were amplified (5 kb) and sequenced. Analysis of the deduced amino acid sequence of the F. psychrophilum G4 OmpH-like protein revealed that it is a 166-amino-acid protein (Fig. 7B) that is almost totally conserved (except for a single Ile25/Thr25 substitution) among the F. psychrophilum strains used in this study (Table 1). Sequences producing significant alignments were (i) the cationic outer membrane OmpH-like protein from Porphyromonas gingivalis and (ii) the putative outer membrane proteins from Bacteroides fragilis, Bacteroides thetaiotaomicron, and Cytophaga hutchinsonii, all of which belong to the CFB phylum (Fig. 7B). However, the best hit found was with P. gingivalis OmpH (163 amino acids long) and was only 32%. A search of the NCBI conserved domain database revealed significant alignments with almost the whole sequence of the pfam03938 domain of OmpH, an outer membrane protein (OmpH-like) (E value = 3 x 105), and with the COG2825 domain of the histone-like protein (HlpA), another outer membrane protein (E value = 1 x 107), confirming the similarity to the OmpH analogs. The program SignalP does in fact predict that the OmpH-like protein is an outer membrane protein with an N-terminal signal peptide that may be cleaved between Ala23 and Gln24 (signal peptide probability, 0.999). The leader sequence shows a typical transmembrane helix structure with a significant outside-to-inside helix formation score of 1,422 on the transmembrane prediction scale, suggesting strongly that OmpH is a surface-located protein. The mature protein (143 amino acids) gives rise to a predicted 16,248.6-Da protein, which is in very close agreement with the observed mass (18 kDa).
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FIG. 7. (A) ompH locus organization in F. psychrophilum JIP02.86. (B) Multiple sequence alignment of F. psychrophilum G4 P18 with OmpH-like homologues from the following strains belonging to the CFB phylum: Bacteroides fragilis NCTC 9343 (BF_NCTC), Bacteroides thetaiotaomicron VPI-5482 (BT_VPI), and Porphyromonas gingivalis W83 (PG_W83). Identical amino acids, conservative substitutions, and semiconservative substitutions are indicated by stars, stacked double dots, and single dots, respectively. Dashes are gaps introduced to maximize alignment. The predicted cleavage site of the F. psychrophilum OmpH signal peptide is indicated ( ). Peptides sequenced de novo are underlined and shown in bold.
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We previously hypothesized that P18 might be an S-layer protein (30) since it is actually recovered from flavobacterial cells by treatments known to release such components. However, the protein appears to be a true member of the OmpH family (also known as Skp or HlpA) (15, 20, 32). The OmpH-like protein produced by F. psychrophilum is surface located and immunoaccessible and induces neutralizing antibodies, as recently reported for Chlamydia pneumoniae (14). In Escherichia coli, OmpH has been described as a molecular chaperone required for efficient release of translocated proteins from the plasma membrane. It interacts with unfolded proteins emerging from the sec translocation machinery and contributes to the correct folding of some outer membrane proteins and their insertion into the outer membrane (e.g., OmpA [10, 40]) as well as to preventing the aggregation of soluble proteins such as lysozyme (47). Such a key function in the periplasmic space for OmpH (41) is not consistent with the surface exposition observed in F. psychrophilum (this study) as well as in Chlamydia trachomatis (3) and C. pneumoniae (14). The flavobacterial OmpH protein might have different functions, including the chaperone periplasmic function generally assigned to the OmpH family and an interaction function with the environment, which might be an adaptation to some peculiar aspect of flavobacterial physiology. Further studies are needed to determine whether surface-exposed P18 has chaperone-like activities similar to those of periplasmic OmpH proteins from other bacteria.
Proteins belonging to the OmpH family have been described for a wide variety of bacterial species. Some studies have provided results indicating that members of the OmpH family may be immunogenic antigens of some bacteria (e.g., Chlamydia trachomatis [3]). This was also observed with F. psychrophilum. Indeed, sera from convalescent fish that were naturally infected were used successfully in this study to identify the OmpH-like protein in a set of other antigenic flavobacterial proteins recognized predominantly in the context of infection (Fig. 3). Consequently, the native OmpH-like protein was involved in serological and immunological experiments. High-titer anti-OmpH-like protein antibodies were raised in rabbits. The monospecific antiserum reacted with the OmpH-like protein only since one single band of 18 kDa was detected on immunoblots of F. psychrophilum lysates resolved by SDS-PAGE (Fig. 3 and 4), and the OmpH-like protein was shown to be highly conserved. Moreover, such antibodies binding the OmpH-like protein were capable of inducing protein and/or membrane distortions, resulting in the lysis of F. psychrophilum in the presence of complement. However, it is well known that the correlation is limited between protective immunity and the level of antibodies in fish after vaccination and that fish elicit a nonspecific immune response upon injection of non-antigen-containing agents (e.g., Freund's adjuvant). Here we observed good protective immunity against F. psychrophilum, suggesting that specific immunity was obtained. Indeed, vaccination trials with a fraction highly enriched with OmpH-like protein induced significant protective immunity in fish, with this protection very probably being a result of the relatively high titers of antibodies produced against the flavobacterial OmpH-like protein (Fig. 5; Table 3). The bacteriostatic/bactericidal actions of the monospecific anti-OmpH-like protein rabbit serum observed in the present study also suggest that a sufficiently strong immune response against this protein could be related to protection.
Taking these results as a whole, we concluded that the OmpH-like protein in F. psychrophilum presents the capability to induce high antibody titers in rainbow trout and results in significant protective immunity. While additional studies are needed to assess the possible involvement of the OmpH-like protein in the pathogenesis of this bacterium, this work should be a prelude to the development of recombinant vaccines against F. psychrophilum, using the antigen characterized here as a possible immunity target.
We thank M. J. McBride, C. Quentel, and C. Michel for the generous gifts of sera directed against F. johnsoniae GldJ and against trout antibodies and for some F. psychrophilum strains, respectively. We also thank S. Papillon and A.-M. Richard (from Enitab) and B. Shewmaker, M. Higgins, and A. Weighall (from Clear Springs Foods) for their excellent technical assistance.
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