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Applied and Environmental Microbiology, July 2006, p. 4862-4870, Vol. 72, No. 7
0099-2240/06/$08.00+0 doi:10.1128/AEM.00251-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Microbiology Division, Department of Research and Development, National Food Administration, Uppsala, Sweden
Received 1 February 2006/ Accepted 9 May 2006
| ABSTRACT |
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| INTRODUCTION |
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), it is also desirable to have information on the distributions of the parameter values, since a deterministic approach not taking strain variability into account may provide an incomplete or misleading result (21, 31). The literature on strain variation and of the characteristics of the parameter distributions is still rather meager (33). One reason for this gap in knowledge is the appreciable work required to obtain these data. The increased need for accurate data is difficult to meet with the use of the classic viable count methods (17). In this respect, automated optical measurement methods can be useful but need to be evaluated against the classic methods. Estimation of microbial growth parameters from measurements of turbidity has the advantages of being rapid, nondestructive, and relatively inexpensive compared to many other techniques, e.g., classical viable count methods (10). However, turbidity methods also have limitations, such as being applicable only to liquid cultures and having high detection limits in the range of 106 to 107 bacteria ml1 and consequently yielding little direct information on the lag phase. The turbidity of a suspension is commonly measured as the absorbance of light of a defined wavelength (19). A specific area of concern is the relation between what is measured, absorbance, and bacterial numbers and the constancy of this relation over the duration of the experiment. In some studies, absorbance data are used directly, whereas in others, efforts are made to establish calibration curves by defining the relationship between the absorbance and bacterial counts (17).
Several approaches to estimate growth parameters from turbidity data exist, and these have recently been described and compared (10). In general, the approaches are based either on fitting primary growth equations to absorbance data directly, to log-transformed data, or to detection times of serially diluted cultures. One advantage of the latter approach is that a calibration between absorbance and numbers is not necessary (the Baranyi-Pin [BP] method described below), or an initial single measurement is sufficient (decimal dilution [DD] method described below). Dalgaard and Koutsoumanis (10) concluded that accurate estimates based on absorbance data were obtained from fitting a Richards model with fixed values for m, a parameter describing the degree of dampening in growth, as well as from absorbance detection times of serially diluted cultures. The µmax values estimated with these models were independent of the growth yield, in contrast to µmax values estimated with, for instance, the exponential growth model. It was suggested that the Richards and time to detection methods were complementary and would best be used together (10).
One of the time to detection approaches is based on the Baranyi growth model and employs an analysis of variance (ANOVA) procedure as suggested by Baranyi and Pin (2) to estimate the specific growth rate and the physiological state variable. The lag time can be derived from these parameters. The physiological state parameter is a dimensionless parameter quantifying the suitability of the culture to the actual environment. The extreme values of the parameter are 0 and 1, and the values correspond to situations where the growth curve has an infinitely long lag time and no lag, respectively (2). The authors estimated the parameter values for a cocktail of three Pseudomonas species but did not present results that compared the estimates with values estimated from viable count data. In the study by Dalgaard and Koutsoumanis (10), summary results from experiments using a lower number of replications of serially diluted cultures than in the original study by Baranyi and Pin (2) and mixtures of five to eight strains of a range of species (not Staphylococcus aureus) were presented. The results suggested that the ANOVA procedure (2) yielded accurate estimates of µmax values as indicated by the mean ratio of the µmax determined by viable counts to the µmax determined by the ANOVA procedure of 0.97 ± 0.16 (standard deviation).
Conclusions on the importance of strain-to-strain variation for predictive models vary, possibly reflecting the conditions and strains used in the different studies. Oscar (23) reported that the coefficient of variation (CV) for growth rates were similar among and within individual Salmonella strains growing in sterile ground chicken breast burgers at 25°C. In contrast, Begot et al. (6) found strain variation more important when investigating the growth response of 66 Listeria monocytogenes and Listeria innocua strains of variable origin under different growth conditions. The authors did not report the coefficients of variation, but the differences between minimum and maximum parameter values among strains were greatest for estimated lag times, 25 times, whereas the maximum variation in generation times, and thus growth rates, was two to three times. An extensive strain-to-strain variation in growth rates was also reported for strains of L. monocytogenes belonging to three different genotypic lineages (11). Similarly, the importance of variation among strains of Escherichia coli O157:H7 was concluded, since the coefficients of variation of estimated growth parameters among 17 strains were larger than those assessed from experiments using single strains (33). Dengremont and Membré (13) employed multivariate data analysis to identify three groups among five Staphylococcus aureus strains using growth rates at different combinations of temperatures, pHs, and NaCl concentrations as the identification characteristic.
The overall objectives of this study were twofold: (i) to identify the best approach, in terms of accuracy and convenience, for determining growth parameters using turbidity data; and (ii) to apply this approach to the characterization of the variation in growth parameters of Staphylococcus aureus strains isolated from Swedish chicken carcasses. Specifically, three approaches for determining growth parameters by means of detection times (2, 10) and two approaches by fitting growth models to turbidity growth curves directly (10) were validated against viable count data.
| MATERIALS AND METHODS |
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Strains were stored at 70°C in BHI broth with 20% glycerol. Prior to an experiment, strains were inoculated on blood agar plates (Oxoid, England) and incubated for 24 h at 37°C. One colony from each isolate was inoculated in tubes with 5 ml chicken broth and grown overnight (18 to 24 h) at 37°C. A 0.1-ml volume of the culture was transferred into a new tube and grown overnight as described above. This was repeated once more, before the appropriate dilutions of the culture suspension were used in the experiments.
Growth measurements.
In order to identify the best approach to estimate growth parameters, the growth of two strains, S30 and S119, was quantified by viable count data and compared with growth estimated from five methods based on turbidity measurements. The turbidity of the bacterial suspensions was measured as the absorbance at 420 to 580 nm using the wideband filter in the Bioscreen C instrument, an automated turbidity reader (Oy Growth Curves AB Ltd., Helsinki, Finland). The turbidity methods evaluated were the exponential growth and Richards methods, which were based on turbidity growth curves, and the decimal dilution (DD), Baranyi-Pin decimal dilution (BPdec), and Baranyi-Pin binary dilution (BPbin) methods, which were based on the time to the detection of turbidity in serially diluted cultures (see below). For all methods, strains were cultured as described above. The procedure for preparing bacterial suspensions of the desired concentration was standardized by adjusting the turbidity of the initial stock suspensions, from which dilutions were made, to approximately 0.24 absorbance unit. This value was 0.03 unit or more above the turbidity of the sterile medium, the minimum difference used in reference 2, and represents the turbidity detection level. This turbidity corresponds to approximately 107 CFU ml1.
For the viable count method, the initial suspension was diluted to approximately 103 CFU ml1. From this dilution, 300 µl was transferred to each one of the 30 wells in the Bioscreen microplate and incubated at 17°C for up to 8 days. At appropriate intervals, samples were withdrawn from wells in the microplate without removing it from the instrument, diluted in peptone water, and plated on Trypticase soy agar (Acumedia, Baltimore, MD) using a spiral plater (Eddy Jet; IUL Instruments, Germany). After incubation at 37°C for 24 h, the plates were read. Growth rate determination was done in duplicate wells in two replicate experiments. Blank sample wells with uninoculated broth were included as a control for contamination.
Turbidity growth curves at 17°C were generated using the Bioscreen C instrument. Growth was followed by measuring the turbidity every 15 to 30 min for up to 12 days in wells inoculated with 300 µl bacterial suspensions of an initial concentration of approximately 104 CFU ml1. The microplates were shaken for 5 seconds prior to measurement of turbidity. Growth rate determination was done in triplicate wells in three replicate experiments.
The time to detection experiments were carried out on duplicate wells of five consecutively decimally diluted cultures (DD and BPdec methods) or quadruplicate wells of five consecutively binary diluted cultures (BPbin method). Dilutions were prepared from stock suspensions with a turbidity just above the detection limit of the instrument as described above. The resulting initial bacterial concentrations for the different dilutions in the time to detection experiments were approximately 102 to 106 CFU ml1 (DD and BPdec) and 3 x 102 to 0.5 x 104 (104/25 to 104/21) CFU ml1 (BPbin), respectively. These experiments were repeated two (BPbin) or three times. The time to detection methods DD and BPdec were selected for the characterization of strain variability in growth parameters, because µmax values estimated by these methods were closer to viable count estimates than values estimated by growth curve methods, and for practical reasons, since both can be used with the same experimental setup (dilutions) in contrast to BPbin.
For the different strains, the turbidity detection level corresponded to viable counts between 0.2 x 107 and 4.2 x 107 CFU ml1. To illustrate this variation among strains, the initial number of cells per turbidity unit was calculated by dividing the turbidity in the initial suspension by the bacterial count (see Table 4).
Growth parameters.
The maximum specific growth rate µmax and lag time
were estimated from the viable count data by the Baranyi model (3) using the MicroFit software (version 1.0; Institute of Food Research, Norwich, United Kingdom [http://www.ifr.ac.uk/microfit/]).
As described by Dalgaard and Koutsoumanis (10), µmax values of the exponential growth model (equation 1) and the Richards model (equation 2) were estimated by regression analysis of turbidity growth curves. The LAB Fit Curve Fitting software (version 7.2.32; W. Pereira da Silva and C. Pereira da Silva [http://www.labfit.net]) was applied for the nonlinear regression analysis involved in estimating the parameters of the Richards model, and m in equation 2 was fixed to 0.5, 1, or 2.
In addition, µmax values were estimated from turbidity detection times of serially diluted cultures. The simplified approach (DD method, equation 3) described by Dalgaard and Koutsoumanis (10) to the decimal dilution method suggested by Cuppers and Smelt (9) and the ANOVA method (BPdec and BPbin, equations 4 and 5) of Baranyi and Pin (2) were used. In the DD method, the detection times of the serial dilutions were plotted against the natural logarithm of their initial bacterial counts, and µmax and k2 were determined by linear regression according to equation 3. In the ANOVA method, a Microsoft Excel spreadsheet and Solver add-in was used to find the µmax value that minimized the ratio of the summed between- and within-dilution variances of the physiological state variable
(2). In this approach, both µmax and the physiological state variable
are estimated, and from these estimates, the lag time is calculated from equation 6 (2). Lag times were estimated with the DD method from equation 7 using the values of µmax and k2 estimated from equation 3.
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. The subscripts EXP, Richards, DD, and BP refer to the method used for growth parameter estimation, and k1 and k2 are constants (intercepts). In the Richards model, m is a shape parameter and ti is the time at the inflection point. Nj, Tj, rj, and
j indicate initial cell levels, turbidity detection times, dilution ratios, and physiological state parameters corresponding to different serially diluted cultures, respectively. Xdet is the bacterial count at the turbidity detection level.
The ratio R between the µmax values estimated from viable count (indicated by subscript vc) and the different turbidity methods (indicated by subscript Exp, R, DD, or BP) was calculated as µvc/µ of the turbidity method for each method. In the same way, the ratio R was estimated for
values.
The apparent growth yield of strains was expressed as the mean difference between the initial and final turbidity measurements in the detection time experiments. Nonlinearity of turbidity response was not corrected for. The 10- and 100-fold dilutions of the cultures were used, since there was no significant difference in the apparent growth yield between these dilutions as opposed to higher dilutions.
Statistical and distribution analyses.
Analysis of variance was used to examine for possible effects of the method and biotype on the estimates of growth parameters. For each method, a two-sample t test was carried out to test whether the mean growth rate and mean lag time estimated by the method differed from the parameters estimated by the viable count method. This analysis was not possible for the lag time of strain S30, since only one observation of lag time based on viable counts was available. To test whether the correlation between apparent growth yield and estimated growth parameters was different from zero, Pearson product-moment correlation coefficients were calculated. The statistical tests above were performed with Minitab version 12.22 (Minitab Inc., State College, PA), and in the ANOVA, a generalized linear model, GLM, with no interactions between factors was used.
The growth parameter values estimated from the growth experiments of the 34 strains were used to determine the distributions of growth parameters among strains. The Kolmogorov-Smirnov (KS) test was used to test whether the growth parameters were normally distributed. The normal, lognormal, logistic, gamma, and Weibull distributions were fit to the growth rate, lag time, and physiological state data by the @Risk software package (version 4.0.5; Palisade Corporation, Newfield, N.Y.), and fitted distributions were ranked on the basis of the Kolmogorov-Smirnov test in combination with the Anderson-Darling (AD) test. A description of the distributions and their parameters can be found in reference 32. The coefficient of variation of growth parameters was calculated as the standard deviation divided by the mean and was compared to the CV for single strains (S30 and S119, respectively) to investigate the importance of strain variation. To evaluate whether the negative lag times estimated by the DD method were associated with poor fits of equation 3 to data, the effect of the sign of the lag time on the median R2 value was examined by the Mann-Whitney test.
| RESULTS |
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values, the ratio between
values estimated by the viable count method and the respective time to detection method, ranged from 1.36 (BPdec) to 1.50 (BPbin) (Table 2). The coefficients of variation for determination of growth parameters of strains S30 and S119 were estimated from the means and standard deviations of the repeated experiments and give an indication of the magnitude of stochastic variation associated with the current experimental conditions and methods (Table 3). In general, the mean CV was larger for the estimation of lag time than for µmax values. For both the DD and BPdec methods selected for characterization of strains, the mean CV of µmax was 0.08, which is similar to the CV of the viable count method (0.10) (Table 3). For lag time, the corresponding CV was 0.45 (DD) and 0.15 (BPdec) compared to 0.21, the CV of the viable count method (Table 3).
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values for the examined S. aureus strains are summarized in Table 4. The µmax values of the strains as determined by BPdec ranged from 0.07 to 0.24 h1 (corresponding to generation times of 2.9 to 9.9 h) and by DD from 0.04 to 0.26 h1 (corresponding to generation times of 2.7 to 17.3 h). The lag times determined by the BPdec method ranged from 1.2 to 25.2 h. The lag times determined by the DD method were similar when positive, but for 10 strains, the estimation resulted in negative lag times. Negative lag times appeared to be associated with poor fits to the data, as suggested by significantly lower median R2 values in these experiments compared to experiments with positive lag times, 0.80 and 0.95, respectively (Mann-Whitney, P < 0.001). The BPdec method also yielded values of
, the physiological state parameter, ranging from 0.01 to 0.92.
The mean µmax value of the 34 strains estimated with the DD method was significantly lower than that with the BPdec method (t test, P < 0.01) (Table 4). There was no significant effect of strain biotype on mean µmax, mean
, or mean
as determined by the methods (ANOVA, P > 0.05).
The distribution of
as determined by BPdec and µmax by the DD method was not significantly different from a normal distribution (KS, P > 0.15). In contrast, µmax and
determined by BPdec and
determined by DD were significantly different from a normal distribution (KS, P < 0.05). The distribution of µmax (BPdec) was best described by the logistic distribution, and the distribution of
(BPdec) was best described by the lognormal distribution as ranked by the AD and KS tests (Fig. 1). For
and µmax (DD), the best distribution was either the logistic (KS) or lognormal (AD) distribution. However, for all parameters, the differences in the calculated test values of the AD and KS tests between the investigated distributions were small.
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values determined by the DD method (correlation analysis, P < 0.01) but not for µmax, or
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, and µmax determined by the BPdec method (correlation analysis, P > 0.15). | DISCUSSION |
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As pointed out by Dalgaard and Koutsoumanis (10), the drawback of time to detection methods is the number of wells required for each dilution series limiting the maximum number of treatments to 20 in one experiment, since the Bioscreen instrument can analyze 200 wells. This is under the condition that only 10 wells are used per treatment, i.e., many fewer replicated wells for each dilution than in the original study (2). However, the BPdec method appeared to yield good estimates using this setup both in the present study and in the study by Dalgaard and Koutsoumanis (10). In a few cases, a data point had to be omitted for the Solver routine to find a solution. Thus, it may be preferable to increase the number of replicate wells, possibly at the expense of the number of dilutions.
In comparison with the DD method, the BPdec method consistently yielded nonnegative lag times. As is seen in equation 7, a negative lag time results when the intercept, k2, in the fitted line described by equation 3 is less than the ln of the concentration corresponding to the detection limit, Xdet. The variance of detection times commonly increases with increasing detection time, i.e., in the more-dilute solutions, and when fitting the data, these points can have a large influence on the slope and thus the intercept of the line. This explanation is consistent with the poorer fits observed in experiments resulting in negative lag times. The method of decimal dilution proposed by Cuppers and Smelt (9) was more elaborate than the method applied here and the method used by Dalgaard and Koutsoumanis (10) and included an iterated weighted regression procedure. One reason for using a more complicated procedure was to address the problem with increased variance with increased times to detection. A second reason was because they measured turbidity at intervals, which is less of a problem in the Bioscreen instrument where measurements can be done very frequently. Despite these precautions, the lag time estimates were reported to be rather poor, and instead Cuppers and Smelt (9) concentrated on modeling only the growth rates.
The present results were compared with the predictions of the S. aureus growth model in the Pathogen Modeling program (PMP) (version 6.1; Eastern Regional Research Center, U.S. Department of Agriculture, Wyndmoor, Pa. [http://www.ars.usda.gov/main/site_main.htm?modecode=19350000]), under similar but not exactly the same environmental conditions. The PMP model is based on data for a single strain, S. aureus 196E, and NaCl, a non-glass-forming ionic compound, was used as the only humectant (7). In contrast, the present study also used glycerol, a nonionic glass former, as the humectant. It has been considered that glycerol is more inhibitory to growth than NaCl, but contradictory results exist (29, 30). In a recent study, the difference in growth rates of S. aureus with glycerol or NaCl as the humectant was less than a factor of 2 and depended on the temperature and the identity and presence of compatible solutes (30). In that study, the growth rates with glycerol were usually but not consistently higher than with NaCl. Thus, it is hard to know the implications of the use of glycerol instead of NaCl for the comparison with the PMP model other than that the effect is probably small. The predicted growth rates were converted from the generation times given by the software program. The mean growth rate predicted by PMP was 0.10 h1 (95% confidence interval [95% CI] of 0.09 to 0.12 h1), which is similar to the mean growth rate estimated for the strains by the DD method (0.11 h1) but lower than that estimated by the BPdec method (0.13 h1 [Table 4]). However, compared to the observed growth rate in a cooked chicken product stored at 17.7°C, 0.02 h1 (8), both the predictions by PMP and the estimated growth rates in the present study are overestimates. The mean lag time predicted by PMP was 19.0 h (95% CI of 14.2 to 25.5 h), which is longer than that estimated by the BPdec method (10.4 h [Table 4]). In comparison, Castillejo-Rodriguez et al. (8) reported a lag time of 40 h for S. aureus in a cooked chicken meat product stored at 17.7°C.
The present data indicate the magnitude of variation in growth rates that exists among strains of S. aureus isolated from chicken carcasses and representing different biotypes. A comparison between the CV of growth parameters for a single strain and for a set of strains is one approach to evaluate the importance of strain variation for estimation of parameters for use in predictive models (23). As illustrated by the present results (Table 1), repeated estimations of growth rate responses from experimental data are typically dispersed due to different sources of errors (28). The magnitude of dispersion can be characterized by the coefficient of variation and gives an indication of the precision of the estimate. As can be calculated from the mean coefficients of variation in Tables 3 and 4, dispersion around the mean growth rate was four (0.31/0.08, BPdec) to six (0.45/0.08, DD) times larger due to strain variability (Table 4) compared to the inherent variability of the method and experimental protocol as assessed for single strains (Table 3). Thus, strain variation contributes to a large increase in the dispersion around the estimated mean maximum specific growth rate. In the same way, dispersion around the mean lag time increased three times based on the CV of the BPdec method. Due to the many negative lag times obtained with the DD method, similar comparisons were not considered meaningful. The importance of strain variability on estimation of growth parameters is probably dependent on the environmental conditions, since strain variability has been reported to increase at more unfavorable growth conditions, e.g., at temperatures far away from optimum temperatures (16).
Whiting and Golden (33) used a different approach to evaluate the influence of strain variability. They compared strain variation expressed as a 95% confidence interval of the mean of the estimated growth parameter with the confidence interval of maximum specific growth rate and lag time predicted under the same environmental conditions by the U.S. Department of Agriculture Pathogen Modeling program version 6.1. However, one limitation of this approach is that the confidence interval is dependent not only on variability (SD) but also on the number of observations, i.e., the number of strains investigated. The 95% CI of the growth rate predicted by the S. aureus model in PMP is nearly identical to the interval estimated for the strains with the DD method and actually larger than the interval estimated with the BPdec method (Table 4). Thus, their approach applied to the present data would lead to the opposite conclusion about the importance of strain variability.
While there are many studies indicating the magnitude of variation in growth rate parameters (e.g., references 4 and 11), very few have attempted to characterize the distribution of these parameters due to variation among strains (33). The results of the present study indicate that the distribution varies with the growth parameter, since different distributions were ranked best for growth rate and lag time. However, the differences between distributions were in most cases not very large. In addition, the ranking of the best distribution was also dependent on the statistical test used, reflecting the different properties of the KS and AD tests, where the latter may be more useful, since it puts more emphasis on the whole range of data including the tails of the distribution (32). Thus, the present data set representing 34 strains was not sufficiently large to show that one distribution was definitively better than another. Whiting and Golden (33) came to the same conclusion in their study of growth, survival, thermal death, and toxin production for a data set of 17 strains of E. coli O157:H7.
The physiological state parameter,
, has been described as quantifying the suitability of the culture to the actual environment, or the potential fraction of the initial counts which, without lag, could catch up with the real growth curve, which does have a lag (2). In view of this, it is interesting to note the variation, from 0.01 to 0.92, that existed among S. aureus strains prepared in the same way and grown in the same media (Table 4). The variation of this parameter, or rather a stable transformation of the parameter, h0, with growth phase and temperature has been investigated (12), but the variation of
among strains has not been reported before.
It is concluded that under the present growth conditions, a combination of turbidity measurements and a time to detection method is a useful approach to estimate the growth parameters of S. aureus, similar to those obtained by viable count methods. In comparison with the DD method, the BP approach yields consistently nonnegative lag times, does not require quantification of bacterial numbers in the stock solution, and in addition yields information on the physiological state variable. Taking the difference between the initial and final turbidities represents an apparent growth yield at best, and this estimate should be used with caution. The variability in growth rates and lag times found among strains emphasizes the need to consider the implications of strain variability for all uses of predictive modeling and risk assessment.
| ACKNOWLEDGMENTS |
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The skillful technical assistance of Erika Collin and Catharina Carlsson is gratefully acknowledged. J. Baranyi kindly provided the Excel spreadsheet for the ANOVA procedure. Mats Lindblad is acknowledged for helpful comments and discussions on earlier versions of this article.
| FOOTNOTES |
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| REFERENCES |
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