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Applied and Environmental Microbiology, July 2006, p. 4923-4930, Vol. 72, No. 7
0099-2240/06/$08.00+0 doi:10.1128/AEM.02605-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Centre of Microbial and Plant Genetics, K.U. Leuven, Kasteelpark Arenberg 20, 3001 Leuven, Belgium,1 Unité de Génétique, Institut des Sciences de la Vie (ISV), Université catholique de Louvain, Louvain-la-Neuve, Belgium2
Received 4 November 2005/ Accepted 15 April 2006
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Lactobacillus rhamnosus GG (= ATCC 53103) (53), which was isolated from a naturally occurring healthy human gut flora, is one of the most extensively studied probiotic organisms (16, 23, 49). However, our understanding of the physiology and genetics of this bacterium is still limited, mainly due to the absence of a reliable transformation procedure. In the past decade electroporation has become the method of choice for transforming lactobacilli (34). The efficiencies of electroporation between different Lactobacillus species and even between strains belonging to the same species can vary significantly (34). Another difficulty in the development of a transformation procedure is choosing the plasmid used. Indeed, the ability of a plasmid to replicate and to express its selectable marker in a given species cannot be predicted and influences the transformation frequency (52). The objective of the present study was to develop a reproducible electroporation procedure for L. rhamnosus GG. We adapted the previously described procedure for electrotransformation of L. rhamnosus 1/6 (56). The optimized protocol was used to increase the arsenal of genetic tools for L. rhamnosus GG with the green fluorescent protein (GFP). The first report describing GFP labeling of Lactobacillus was made by Geoffroy et al. in 2000 (15). Since then, other GFP-labeled lactic acid bacteria have been described (17, 25, 43). A GFP-labeled Lactobacillus plantarum strain was obtained by using the nisin-controlled expression (NICE) system initially developed for Lactococcus lactis (4). After addition of subinhibitory amounts of the signaling molecule nisin (7), the two-component NisRK system drives expression of GFP under control of the nisin-inducible nisA promoter (4). The NICE system has been used successfully for a variety of lactic acid bacteria (9, 26, 29, 42). In this study, we used the optimized electroporation protocol to implement the NICE system in L. rhamnosus GG in order to tag L. rhamnosus GG with the green fluorescent protein. The GFP-tagged strain was used to determine the sensitivity of L. rhamnosus GG to human beta-defensins.
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TABLE 1. Bacterial strains, plasmids, and primer sequences used for PCR
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Construction of pFAJ1934.
The nisRK genes were amplified by PCR with the proofreading Pfx enzyme (Invitrogen) used according to the manufacturer's instructions and primers PRO-12 and PRO-13, using pMEC10 as the template DNA. The 2,634-bp fragment obtained, containing the nisR promoter, was digested with EcoRI and ligated into the corresponding unique site of pEM40. PCR, restriction, and sequence analysis confirmed the localization of nisRK downstream of the erythromycin resistance (ery) gene. The plasmid was designated pFAJ1934 and introduced into E. coli for propagation and subsequent plasmid DNA isolation. In pFAJ1934, the nisRK genes are localized downstream of the ery gene of pEM40, in the opposite orientation. This orientation of the nisRK genes prevents read-through transcription of ery, which lacks a functional transcription terminator (42) and allows low levels of expression of nisRK, which is required for a functional inducible expression system. Indeed, in order to retain the inducibility to nisin without a significant increase of basal activity, low levels of expression of nisRK are necessary (42).
Preparation of L. rhamnosus GG electrocompetent cells.
An overnight culture of L. rhamnosus GG was serially diluted (102- to 106-fold) into freshly prepared prewarmed MRS medium supplemented with 2% glycine and was incubated without agitation at 37°C. After overnight growth, 5 ml of the culture in the exponential growth phase (optical density at 600 nm [OD600], 0.8 to 1) was inoculated into 100 ml of freshly prepared, prewarmed MRS medium supplemented with 2% glycine. The resulting culture, which was kept in a tightly closed 100-ml Duran bottle (to minimize oxygen transfer), was incubated without agitation at 37°C. When the OD600 was 0.2 to 0.3, ampicillin was added to obtain a final concentration of 10 µg/ml (57). Then the cells were incubated until the OD600 was 0.4 to 0.5. This optical density should have been reached within 3 to 4 h after the initial inoculation of L. rhamnosus GG in order to obtain efficient competent cells. Cells were harvested by centrifugation at room temperature (10 to 15 min, 6,000 x g). The cells were washed twice at room temperature with electroporation buffer (0.5 M sucrose, 7 mM potassium phosphate [pH 7.4], 1 mM MgCl2) (2), resuspended in 1 ml of the same buffer, and placed on ice. The electrocompetent cells were used immediately for electroporation. After 16 h of freezing at 80°C, a slight decrease in the electrocompetency of the cells was noticed, but after 1 week of storage, no transformants could be obtained.
Electroporation of L. rhamnosus GG.
A mixture containing 100 µl of a cooled cell suspension and 400 ng of DNA (maximum volume, 4 to 5 µl) was transferred into a precooled electroporation cuvette (Eurogentec) with a 0.2-cm electrode gap and immediately electroporated (Gene Pulser; Bio-Rad Laboratories) by using the following settings: peak voltage, 1.7 kV; capacitance, 25 µF; and parallel resistance, 200
. Following the pulse, the cells were immediately diluted with 5 ml of MRS medium containing 2 mM CaCl2 and 20 mM MgCl2 and incubated (without agitation) at 37°C for 3 h before they were plated onto MRS agar containing the appropriate antibiotic. The transformation efficiency was assessed by determining the number of transformants per microgram of plasmid DNA after anaerobic incubation (BBL GasPak system) at 37°C for 48 to 72 h. Transformants were validated either by restriction digestion (after plasmid isolation and back-transformation to E. coli) or by colony PCR.
Isolation of L. rhamnosus GG DNA.
Total DNA of L. rhamnosus GG was isolated as previously described for Rhodococcus (36), with following modifications. Prewarmed MRS medium (freshly prepared) was inoculated with ca. 2 x 108 CFU of an overnight culture of L. rhamnosus GG. After 2 to 3 h of growth without agitation at 37°C, 600 µg/ml ampicillin was added to the culture, which was then incubated for another 2 to 3 h. Bacterial cells were washed with Tris-EDTA buffer (10 mM Tris, 1 mM EDTA; pH 8.0) and treated with lysozyme (2 mg/ml; Sigma) at 37°C for 30 min. The cells were lysed further by addition of sodium dodecyl sulfate (final concentration, 1%) and NaCl (final concentration, 1 M). RNase A (final concentration, 35 µg/ml; Sigma), prepared as described by Sambrook et al. (47), was added, and this was followed by 15 min of incubation at 55°C. The remainder of the protocol has been described previously (36). The precipitated DNA was resuspended at 4°C for 48 to 72 h. Total DNA was stored at 4°C. For isolation of plasmid DNA from L. rhamnosus GG, the protocol used for isolation of total DNA was used, with some minor adaptations. After sodium dodecyl sulfate and NaCl were added, the mixture was incubated at 20°C for 1 h. Cell wall components and degraded total DNA were removed by centrifugation, after which the procedure used for isolation of total DNA was used.
Microtiter plate ß-glucuronidase assay to optimize nisin induction.
Nisin-induced expression of gusA (pNZ8008) (28) was optimized essentially as described by Pavan et al. (42), except that strain L. plantarum NCIMB8826 was replaced by L. rhamnosus GG FAJ1905. pNZ8008 (28) was introduced into FAJ1905 by using the optimized electroporation protocol described above. ß-Glucuronidase assays were performed by the method described by de Ruyter et al. (4), modified as described by Miller (35), which resulted in the following optimized microtiter plate-based protocol. After appropriate induction, 1 ml of cells was harvested by centrifugation (5 min, 5,000 x g) and resuspended in 500 µl of NaPi buffer (50 mM NaHPO4, pH 7.0). After the OD595 of 135 µl was determined, cell suspensions were frozen at 80°C in 10-µl aliquots in 96-well plates until they were assayed for ß-glucuronidase activity. To each 10-µl cell suspension, 90 µl of GUS buffer (50 mM NaHPO4 [pH 7.0], 14.3 mM ß-mercaptoethanol, 1 mM Na2EDTA, 0.1% Triton X-100, 0.1% sodium laurylsarcosine, 25 mM p-nitrophenyl-ß-D-glucuronic acid [PNPG] [Sigma]) was added. The mixture was incubated at 37°C. The reaction was stopped by adding 35 µl of a 1 M Na2CO3 solution after sufficient yellow color had developed. The reaction was stopped at at least three different times (replicates) to ascertain that enzyme activity was still linearly increasing with incubation time. The reaction time was recorded. Both OD415 and OD595 were determined. Identical treatments were performed with NaPi buffer but without cells as controls to correct measured sample values. Miller units (MU) of ß-glucuronidase activity were defined as 1,000 times the increase in absorbance at 415 nm per minute per unit of optical density at 595 nm of the cell suspension, as follows: MU = 1,000 x {[(OD415,PNPG 1.75 x OD595,PNPG) x v1]/(t x vt x OD595)}, where t is the time of the reaction (in minutes), OD595 is a measure of cell density just before the assay, OD415,PNPG is the absorbance by PNPG measured after the reaction, OD595,PNPG is a measure of the cell density after the ß-glucuronidase reaction (used as a correction for light scattering by cell debris), 1.75 is the corresponding correction factor, v1 is the volume (in µl) of cells used in the reaction mixture, and vt is the total volume (in µl) of the reaction mixture. The statistical analysis was based on at least three independent repetitions, as designed in the optimization experiment. Optical densities were determined with a microtiter plate reader (VERSAmax; Molecular Devices).
Expression of gfp under control of the nisin promoter.
Expression of gfp driven by the nisA promoter (pMEC45) in L. rhamnosus GG was optimally induced as follows. An overnight culture of L. rhamnosus GG FAJ1905/pMEC45 or FAJ1906/pMEC45 was used to inoculate fresh, prewarmed MRS medium diluted 1:50. After 30 min of incubation at 37°C without shaking, 500 ng/ml nisin was added to the culture, which was then incubated for 2.5 to 3 h. Nisin was prepared as previously described (9).
Epifluorescence microscopy and flow cytometric analysis.
Fluorescence microscopy was performed as previously described (58). Flow cytometric analysis was performed with a FACSCalibur (Becton Dickinson, Erembodegem, Belgium) equipped with a 15-mW, air-cooled argon ion laser excitation light source (488 nm), as previously described (31, 55). For two-color analysis, fluorescence compensation was used to correct for spectral overlap of the green and red signals. Data were analyzed using CellQuestPro (Becton Dickinson).
Human beta-defensin sensitivity assay.
L. rhamnosus GG cells were induced with nisin as described above and collected by centrifugation, and ca. 106 CFU was resuspended in 45 µl of sixfold-diluted Dulbecco's modified Eagle's medium (Gibco, Invitrogen) supplemented with 16.67 mM glucose. Subsequently, 5 µl of human beta-defensins (Peptides International, Inc., Louisville, KY) dissolved in 10 mM acetic acid was added. For human beta-defensin-2 (hBD2), final concentrations ranging from 0 to 12 µg/ml were tested. For hBD1, a final concentration of 12 µg/ml was used. After 3 h of incubation at 37°C, bacterial viability was measured either by plating serial dilutions on MRS agar or by flow cytometry using the green fluorescent protein-propidium iodide (PI) assay as previously described (31). Each experiment was performed in triplicate.
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FIG. 1. Optimization of the electroporation protocol. The protocol described by Varmanen et al. (56) for electrotransformation of L. rhamnosus 1/6, a cheese isolate, was used as a starting point. Using the originally described protocol with L. rhamnosus GG resulted in an efficiency of only 102 CFU/µg DNA. By gradually varying the DNA concentration (0.2 to 3 µg DNA) and the voltage applied (1.4 to 2.0 kV) we increased the efficiency 10-fold, and the optimal parameter combination was 400 ng DNA and 1.7 kV. However, pGK13 seemed to be segregationally unstable in L. rhamnosus GG and was not used further. Electroporation of L. rhamnosus GG and L. rhamnosus 1/6 using pLAB1301 resulted in reproducible efficiencies of 102 and 5 x 105 CFU/µg DNA, respectively. The resilience of the peptidoglycan layer in gram-positive bacteria complicates the development of electroporation protocols (54). The composition of the growth medium directly affects the cell wall density and thickness. Therefore, weakening the cell wall by addition of cell wall weakeners, such as glycine (18), can improve the transformation efficiency. We included two culture steps with 2% glycine in the growth medium. When 2% glycine was added to the serial dilutions of an overnight culture of L. rhamnosus GG, the electroporation efficiency increased 10-fold compared to the electroporation efficiency of an identical protocol without an overnight preculture supplemented with glycine. Addition of ampicillin, also a cell wall weakener (57), during the early exponential growth phase of L. rhamnosus GG led to a 20-fold increase in the efficiency compared to the efficiency of an identical protocol without addition of ampicillin.
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Expression of gfp in L. rhamnosus GG driven by constitutive promoters.
Using the optimized transformation protocol, we introduced pMEC30 (15) (a pLAB1301 derivative containing gfpuv under control of the constitutive ldhL promoter from L. plantarum) into L. rhamnosus GG (transformation efficiency, 104 CFU/µg DNA). pMEC30 could be successfully maintained in L. rhamnosus GG, as verified by PCR and plasmid isolation, and subsequently reelectroporated into E. coli. Although pMEC30 was functional in E. coli, no fluorescent phenotype was observed in L. rhamnosus GG.
pRV85 was used previously to tag Lactobacillus sakei with GFP (17). pRV85 (17) could be successfully transferred to L. rhamnosus GG, as confirmed by PCR and Southern analysis (data not shown). L. rhamnosus GG cells bearing pRV85 appeared as green fluorescent bacteria in a fluorescence microscopic analysis, albeit with a low intensity (data not shown). However, pRV85 is a replication-thermosensitive derivative of pWV01 and replicates in gram-positive bacteria at 28°C and is lost at temperatures above 37°C (3). Expression of gfp from pldhL in L. sakei was reported to increase when the culture temperature was decreased (17). In view of future applications, optimization of gfp expression by altering the growth temperature of L. rhamnosus GG, which prefers 37°C for growth, was not pursued.
Also, in L. plantarum gfp expression from a constitutive promoter appeared not to be feasible (15). We attempted to express gfp under control of a nisin-inducible promoter, which was previously reported to be successful in L. plantarum (15).
Expression of gfp in L. rhamnosus GG through implementation of the NICE system.
The nisRK genes with their own promoter were integrated into the chromosome of L. rhamnosus GG. Site-specific integration was accomplished by electroporating the suicide plasmid pMEC10 (42) into L. rhamnosus GG. It is noteworthy that successful integration was obtained only with pMEC10 DNA isolated from E. coli GM2163, a Dam Dcm strain (unmethylated DNA). Putative integrants, which were able to grow on erythromycin, were analyzed by PCR and Southern hybridization (data not shown). No plasmid DNA containing nisRK could be reisolated. One integrant, FAJ1905, exhibited the expected tRNASer integration patterns and was used for further manipulation.
In parallel, we integrated nisRK into the L. rhamnosus GG chromosome by an alternative method using plasmid pFAJ1934. The nisRK genes were cloned in pEM40, a nonreplicative integration vector containing the A2-specific recombination cassette int-attP (1). Bacteriophage A2 integrates at the 3' end of the tRNALeu locus. This attachment site allowed integration of A2 attP-containing vectors into the genomes of Lactobacillus casei and Lactobacillus paracasei (1), both of which are closely related to L. rhamnosus GG. Transformation of L. rhamnosus GG with pFAJ1934 and selection for erythromycin-resistant colonies yielded putative integrants. PCR and Southern hybridization confirmed that there was chromosomal integration of pFAJ1934 at the corresponding tRNA loci in these clones (data not shown). One integrant that had the correct structure was selected and designated FAJ1906.
The two integration plasmids supported successful chromosomal insertion at permissive sites based on the integration properties of a bacteriophage. This method provides an efficient way to generate stable heterologous DNA integration in L. rhamnosus GG.
Subsequently, pMEC45 (15), the expression vector containing gfp under control of the nisA promoter, was electroporated into FAJ1905 and FAJ1906. Transformants were verified by PCR analysis (data not shown).
In previous applications of the NICE system in different species the workers stressed the need for optimization of nisin induction conditions in each host separately (5, 9, 42). The optimal growth phase for nisin induction, the optimal contact time with the inducer, and the optimal nisin concentration for induction were determined as described previously (42). To do this, we used the ß-glucuronidase activity of FAJ1905/pNZ8008 as a reporter for nisin induction, concomitantly optimizing a user-friendly protocol for analysis of gusA expression in L. rhamnosus GG (see Materials and Methods). The results are summarized in Fig. 2. As Fig. 2 shows, the maximal levels of ß-glucuronidase activity were obtained when the inducer was added early in the exponential phase, 30 min after inoculation (1/50 inoculum; 37°C), after 2.5 to 3 h of induction. Similar to the situation in L. plantarum (42), L. rhamnosus GG was most receptive to nisin when it was added very early in the exponential growth phase; in contrast, in L. lactis addition in the middle of the exponential growth phase was more effective (4).
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FIG. 2. ß-Glucuronidase activity of FAJ1905/pNZ8008 cell extracts. (A) ß-Glucuronidase activity (solid symbols) was determined during growth (open symbols) in different conditions (squares, 1/50 inoculum and incubation at 37°C; triangles, 1/20 inoculum and incubation at 30°C; circles, 1/20 inoculum and incubation at 37°C; diamonds, 1/20 inoculum and incubation at 30°C) after induction with 50 ng of nisin/ml at different times after inoculation. The ß-glucuronidase activity was measured after 2.5 h of contact with nisin. (B) ß-Glucuronidase activity ( ) after different periods of contact with 50 ng nisin/ml. The OD600 ( ) was also determined. (C) Dose-response curve for gusA expression in FAJ1905 harboring pNZ8008 induced with different concentrations of nisin (0 to 5,000 ng/ml). (D) ß-Glucuronidase activity with nisin concentrations ranging from 0 to 100 ng/ml. ß-Glucuronidase activity is expressed in Miller units (M.U.), as described in Materials and Methods. The error bars indicate standard deviations.
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Using these inducing conditions with FAJ1905/pMEC45 and FAJ1906/pMEC45 resulted in bright green fluorescent bacteria, as determined by fluorescence microscopy (Fig. 3) and flow cytometric analysis (Fig. 4). FAJ1905/pMEC45 exhibited slightly enhanced fluorescence intensity compared to FAJ1906/pMEC45 (Fig. 4). This could have been due to the two different locations of nisRK (i.e., in the tRNASer and tRNALeu loci, respectively).
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FIG. 3. GFP-tagged L. rhamnosus GG, based on implementation of the NICE system: epifluorescence microscopic analysis of bacterial cells grown in liquid broth. (A) FAJ1905/pMEC45 induced with nisin as described in Materials and Methods. (B) FAJ1906/pMEC45 induced with nisin as described in Materials and Methods.
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FIG. 4. Flow cytometric analysis of induced (GFP+) and uninduced (GFP) L. rhamnosus GG. FAJ1905/pMEC45 and FAJ1906/pMEC45 were induced with nisin as described in Materials and Methods (FAJ1905/pMEC45 + nisin and FAJ1906/pMEC45 + nisin). Cultures without nisin were used as negative controls (FAJ1906/pMEC45 and FAJ1905/pMEC45 nisin). Green fluorescence intensities (FL1-H) are indicated on the x axis, and cell counts are indicated on the y axis. The cytometric analysis was performed for 2 x 104 events.
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FIG. 5. Sensitivity of L. rhamnosus GG to human beta-defensins. (A) Bacterial viability of L. rhamnosus GG after 3 h of contact with 12 µg/ml hBD1 or hBD2, as determined by GFP-PI-based flow cytometric analysis. The values are the ratios of the mean intensities of the green (FL-1) and red (FL-2) signals. The error bars indicate standard deviations of three independent measurements. No human beta-defensin was added to the control. (B) Bacterial viability of L. rhamnosus GG after 3 h of contact with 12 µg/ml hBD1 or hBD2, as determined by plate counting. The values are percentages of survival of the initial number of L. rhamnosus GG cells. The error bars indicate standard deviations of three independent measurements. (C) Concentration-dependent sensitivity of L. rhamnosus GG to hBD2, as determined by GFP-PI-based flow cytometric analysis as described above.
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The flexibility of the L. rhamnosus GG NICE system should allow expression of other genes of interest under control of the nisA promoter. This could be used to increase the technological suitability of L. rhamnosus GG by food-grade (nisin is a food-grade, approved antibiotic peptide) genetic manipulation approaches (46), as shown by overexpression of the GroESL heat shock protein chaperones in Lactobacillus paracasei NFBC338 (6). Moreover, this system could be used for development and design of live recombinant vaccines (51) in which L. rhamnosus GG is used as a live delivery vehicle. Thus, the implementation of the NICE system in L. rhamnosus GG provides an approach for improving and expanding both the technical performance and the probiotic performance of this strain.
We gratefully acknowledge Valio Ltd., A. Mercenier, M. Alvarez, W. de Vos, and M. Zagorec for kindly providing strains and plasmids used in this study.
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