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Applied and Environmental Microbiology, September 2006, p. 5766-5776, Vol. 72, No. 9
0099-2240/06/$08.00+0 doi:10.1128/AEM.00431-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Bio-Safety Research Institute and College of Veterinary Medicine, Chonbuk National University, Jeonju 561-756, Korea,1 Force Health Protection, 18th Medical Command, Unit 15821, Box 754, APO AP 96205-5281,2 5th Medical Detachment, 168th Medical Battalion (AS), 18th Medical Command, Unit 15247, APO AP 96205-5247,3 Department of Microbiology, College of Medicine, Korea University, 126-1, 5 Ka, Anam-Dong, Sungbuk-Gu, Seoul 136-705, Korea,4 Department of Virology, 1425 Porter Street, U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, Maryland 21702-5011,5 Department of Parasitology, College of Medicine, Yonsei University, Seoul 120-749, Korea,6 Center for Vector-Borne Diseases, School of Veterinary Medicine, University of California, Davis, California 956167
Received 21 February 2006/ Accepted 16 June 2006
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In the United States and Korea, rodents (e.g., the white-footed mouse [Peromyscus leucopus]) and white-tailed deer (Odocoileus virginianus) are reservoirs of Ehrlichia and Anaplasma spp. (9, 12, 35, 51, 53). In Europe, several rodent species are implicated as natural reservoirs for Ehrlichia and Anaplasma spp. (38). Additionally, Ehrlichia spp. have been isolated from wild mice in Japan (25).
The examination of ticks for tick-borne pathogens by molecular tools such as PCR is commonly used for collecting and assessing data regarding the prevalence of these agents. Although no cases of human anaplasmosis (formerly called human granulocytic ehrlichiosis [HGE]) or human monocytic ehrlichiosis have been reported, seroepidemiological findings suggest the presence of human monocytic ehrlichiosis and HGE agents in the Republic of Korea (ROK) (18, 40). In 2000, the first suspected case of Ehrlichia chaffeensis was reported for an active-duty American soldier stationed in the ROK (43). Subsequently, Heo et al. (18) identified antibodies against E. chaffeensis and Anaplasma phagocytophilum among serum samples from patients with febrile illnesses of otherwise unknown etiology in the ROK by an indirect fluorescent antibody test and Western blotting. Recently, Rickettsia japonica was identified in Haemaphysalis longicornis ticks by PCR (29). Antibodies against R. japonica were also detected by an indirect fluorescent antibody test in human patients with acute febrile illness in the ROK (24). We previously reported molecular evidence of the presence of E. chaffeensis and A. phagocytophilum by using genus-specific TaqMan PCR and a species-specific PCR with ticks collected from animals and grass vegetation in the ROK (27) and gave preliminary reports of other tick-borne pathogens, including Anaplasma platys, Ehrlichia ewingii, Ehrlichia canis, and Ehrlichia muris. In 2005, Lee et al. (30) identified E. chaffeensis in H. longicornis ticks from the ROK by PCR. Also, Kim et al. (26) reported the detection of Bartonella species in ticks, mites, and small mammals in Korea. However, the prevalence of tick-borne pathogens, including Rickettsia rickettsii and R. japonica, has yet to be determined by molecular methods.
Recently, advanced molecular techniques such as TaqMan PCR became widely used as rapid and effective tools for the detection and identification of tick-borne pathogens in arthropods, including ticks (19, 27, 31, 41). This study was therefore undertaken to investigate the prevalence of tick-borne pathogens in small mammals and various tick species from the ROK. Conventional and TaqMan PCR assays were applied for rapid screening of ticks for detection of selected pathogens, followed by specific identification of the pathogens using species-specific and genus-specific primers. Using these approaches, we report herein the infection rates for A. phagocytophilum, A. platys, E. chaffeensis, E. ewingii, and Rickettsia spp. in ticks as well as wild-collected small mammals.
The purpose of the present study is to provide a disease risk assessment for various tick-borne pathogens, including Ehrlichia, Anaplasma, Borrelia, and Rickettsia spp., for humans and animals based on their potential exposure to ticks and tick-borne disease pathogens in field environments.
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During 2001 through 2004, a total of 3,564 small mammals belonging to 11 species and 9 genera were collected throughout the ROK at U.S. military installations and training sites as part of the 18th Medical Command Hantavirus Surveillance Program. Of those mammals, 389 rodents, 33 insectivores, and 2 weasels were selected for assessment of tick-borne pathogens. Live-caught rodents, insectivores, and weasels were transported to the central laboratory (Korea University), where they were killed in accordance with approved animal use protocols. After blood samples were taken, the abdominal cavity was opened aseptically, and spleen and other tissue samples were collected. A subsample of spleen samples were sent to Chonbuk National University packed in dry ice, where they were stored individually at 70°C until assayed. Samples were chosen to balance analysis to include all collection areas and mammalian species.
DNA preparation.
For extraction of PCR-amplifiable DNA, the ticks were pooled into a total of 1,638 sample pools (1 to 27 ticks per pool), including 313 pools of larval stages (1 to 27 ticks per pools), 1,176 pools of nymphal stages (1 to 3 ticks/pool), and 151 adult ticks (assayed individually). Purified DNAs were used for the detection of tick-borne pathogens by standardized TaqMan PCR techniques. Individuals (adults) or pools (larvae/nymphs) of ticks and mites (four or five mites/pool) were mechanically homogenized in 1-ml cryovials by using sterile scissors. DNA extraction was performed with a DNeasy tissue kit (QIAGEN, Germany) according to the instructions provided by the manufacturer.
PCR for Ehrlichia and Anaplasma spp.
The extracted DNAs were subjected to an initial screening by TaqMan PCR as previously described, using a set of primers with a probe that amplified the 116-bp fragment of the 16S rRNA genes of bacteria within the family Anaplasmataceae, including the genera Ehrlichia and Anaplasma (27) (Table 1). The fluorescence data were analyzed using PE 7700 sequence detection system software (version 1.7; ABI).
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TABLE 1. Oligonucleotide primers used for detection of tick-borne pathogens
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Nested and single PCRs were performed as previously described in a total volume of 25 µl. Each PCR mixture consisted of 2 pmol of each primer, a 200 µM concentration of each deoxynucleoside triphosphate, PCR buffer I (Super Bio, Korea), 0.75 U of SuperTaq DNA polymerase (Super Bio, Korea), and 50 to 100 ng of sample DNA for the first PCR or 1 µl of the first PCR product for the second PCR. PCR products were electrophoresed in 1% agarose gels, stained with ethidium bromide, and photographed using a still-video documentation system (Gel Doc 2000; Bio-Rad). Unless specified otherwise, PCR products were purified with a GFX PCR DNA purification kit for cloning and sequencing (Amersham Biosciences, United Kingdom). Prevention of cross-contamination and false-negative and -positive results was managed by using plugged tips, performing PCR in a separate room from that used for DNA extraction, and including a negative (water) control in each run. A positive control was run for each master mix batch.
Cloning, nucleotide sequencing, and phylogenetic analysis.
PCR products were purified using the Wizard Plus DNA purification system (Promega), ligated into the pGEM-T Easy vector (Promega), and transformed into TOP10F competent cells. The recombinant clones were verified by colony PCR for the respective clones. Two clones of each isolate were arbitrarily chosen for sequencing of the forward and reverse strands. Plasmid DNA for sequencing was prepared using the SV Minipreps DNA purification system (Promega) according to the manufacturer's instructions.
Amplified and purified DNAs were prepared for direct sequencing using a GFX PCR DNA purification kit (Amersham Biosciences, United Kingdom) and were sequenced by dideoxy termination with an automatic sequencer (ABI Prism 3700 DNA analyzer). Sequence data were collected using ABI Prism data collection software (version 2.1) and analyzed by ABI Prism sequence analysis software (version 2.1.1) and Chromas software (version 1.51; Technelysium Pty., Ltd., Mt. Gravatt Plaza, Queensland, Australia). Sequence homology searches were made via the National Center for Biotechnology Information (National Institutes of Health) BLAST network service. The sequences were aligned initially using ClustalX 1.60 (49). 16S rRNA and rickettsia ompA gene sequences were used for phylogenetic analyses. Aligned sequences were examined with a similarity matrix. Relationships between individuals were assessed by the neighbor-joining method with nucleotide distances (P distance) for 100 replications in the bootstrap test. Phylogenetic analyses based on the obtained sequences were conducted using the maximum likelihood method (PAUP* 4.0b for Macintosh) (48).
Nucleotide sequence accession numbers.
The 16S rRNA gene sequences for the following organisms (with GenBank accession numbers) were used: Ehrlichia sp. strain ERm58 from Rhipicephalus muhsame in Mali (AF311967), Ehrlichia (Cowdria) ruminantium Omatjenne from South Africa (U03776), E. ruminantium from Senegal (X62432), Ehrlichia sp. strain HF565 from Japan (AB024928), Ehrlichia sp. from Ixodes ovatus in Japan (AB028319), E. muris AS145 from Eothenomys kageus in the United States (U15527), Ehrlichia sp. strain TS37 from Japan (AB074459), E. canis from Madrid, Spain (AY394465), Ehrlichia sp. strain Germishuys from South Africa (U54805), Ehrlichia ovina from Turkey and The Netherlands (AF318946), Ehrlichia chaffeensis from H. longicornis in Korea (AY350424), E. chaffeensis from China (AF147752), E. chaffeensis from Arkansas (M73222), E. chaffeensis 0214 from Korea (DQ402484), Ehrlichia sp. strain Tibet from Boophilu micropus in China (AF414399), Ehrlichia sp. strain EBm52 from B. micropus in Thailand (AF497581), E. ewingii HH591-2 from the United States (AY093440), Ehrlichia sp. strain EHt224 from Hyalomma truncatum in Niger (AF311968), Ehrlichia sp. strain EHf669 from Hemaphysalis sp. in Japan (AY309969), A. platys from a dog in Spain (AY530806), Anaplasma bovis AB-KGHL from H. longicornis in Korea (AF470698), Anaplasma centrale vaccine strain from The Netherlands (AF318944), Anaplasma ovis from sheep (AF318945), Anaplasma marginale Lushi from cattle in China (AJ633048), Ehrlichia sp. from Sweden (AJ242785), A. ovis from Germany (AY262124), A. phagocytophilum USG3 from the United States (AY055469), "Candidatus Neorickettsia mikurensis" (AB074460), Ehrlichia-like sp. Schotti variant (AF104680), Wolbachia endosymbiont (AM180551), Neorickettsia risticii (M21290), and Rickettsia rickettsii (DQ150688) (Fig. 1).
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FIG. 1. Phylogenetic tree showing the position of Ehrlichia chaffeensis 0214 from Korea. The tree was made using PAUP* 4.0b software after alignment of 16S rRNA gene fragments obtained (390 bp) from GenBank and sequenced during this study by the ClustalX program. The scale represents 0.01 substitution per base per indicated horizontal distance. The numbers present at nodes of the tree represent the numbers of bootstrap replicates of 100 that display the indicated sequence groupings.
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FIG. 2. Phylogenetic tree showing the position of Rickettsia sp. strain 71-8 from Korea. The tree was made using PAUP* 4.0b software after alignment of ompA gene fragments obtained (532 bp) from GenBank and sequenced during this study by the ClustalX program. The scale represents 0.01 substitution per base per indicated horizontal distance. The numbers present at nodes of the tree represent the numbers of bootstrap replicates of 100 that display the indicated sequence groupings.
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TABLE 2. Results of TaqMan and species-specific tick-borne pathogen PCR for selected tick species and stages of development collected at or near U.S. military installations and training sites in the ROK, 2001 to 2003
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TABLE 3. Tick-borne pathogens identified by DNA analysis in small mammals collected at U.S. military installations and training sites in the ROK, 2001 to 2004
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Species-specific PCR assays were conducted with DNA samples from 857 tick pools and 277 small mammals that were positive by TaqMan PCR. Except for E. muris, five of six tick-borne pathogens evaluated in this study were detected in ticks (A. phagocytophilum [1], A. platys [52], E. chaffeensis [29], E. ewingii [2], and E. canis [18]) and small mammals (A. phagocytophilum [110], A. platys [68], E. chaffeensis [8], E. ewingii [26], and E. canis [51]) by nested PCR (Tables 2 and 3). The most frequently isolated species in ticks was A. platys (52 [3.2%]), followed by E. chaffeensis (29 [1.8%]), E. canis (18 [1.1%]), E. ewingii (2 [0.1%]), and A. phagocytophilum (1 [<0.1%]). In the case of small mammals, the most frequently detected species (n = 424) was A. phagocytophilum (110 [25.9%]), followed by A. platys (68 [16%]), E. canis (51 [12.0%]), E. ewingii (26 [6.1%]), and E. chaffeensis (8 [1.9%]). In an additional study, all of the DNA samples from 1,638 tick pools and 424 small wild mammals were examined for three tick-borne pathogens, B. burgdorferi, R. rickettsii, and R. japonica, directly by single PCRs with specific primers. Twenty-eight H. longicornis (1.7%) ticks and 22 A. agrarius (5.2%) animals were positive for R. rickettsii. However, DNA bands specific for B. burgdorferi and R. japonica were not observed for ticks or small mammals examined during this study. None of the 297 Ixodes spp. (40 pools) collected from small mammals were found to be infected with any of the nine tick-borne pathogens examined in this study. Among 21 mite samples collected from wild rodents, 4 (19%) were PCR positive for Ehrlichia and Anaplasma spp. by TaqMan PCR, while a specific DNA band was not observed for six Ehrlichia and Anaplasma spp., B. burgdorferi, R. rickettsii, or R. japonica.
A total of 21 pools/individual ticks represented multiple infections (Table 4). Pools of larvae and nymphs with multiple infections may represent individual infections from ticks within each of the samples. However, two and one adult ticks, assayed individually, were positive for two and three Ehrlichia/Anaplasma pathogens, respectively. One hundred thirty small mammals had single infections, while 4, 14, and 21 A. agrarius animals had mixed infections of four, three, or two pathogens, respectively (Table 5).
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TABLE 4. Mixed infections of tick-borne pathogens among individual ticks and pools of ticks collected at or near U.S. military installations and training sites near the DMZ, ROK, 2001 to 2003a
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TABLE 5. Mixed infections of tick-borne pathogens in small mammals (Apodemus agrarius) collected at U.S. military installations and training sites, ROK, 2001 to 2004
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During the 3-year period, monthly infection rates for Ehrlichia and Anaplasma spp. in ticks were higher in October (148/172 [86%]) than during earlier months (25% [2/8] in March, 42.8% [511/1,193] in June, 63.3% [19/30] in August, and 73.6% [170/231] in September), except for April (1/1) and July (3/3). Infection rates for small mammals were higher in February (46/49 [93.9%]) than in the other 5 months of sampling (60.3% [38/63] in March, 74.8% [92/123] in April, 83.9% [26/31] in May, 68.8% [44/64] in June, and 56.4% [53/94] in October). The infection rates among ticks positive for Ehrlichia or Anaplasma spp. were higher in September (n = 231) (28 A. platys infections [12.1%], 23 E. chaffeensis infections [10.0%], 2 E. ewingii infections [0.9%], and 16 E. canis infections [6.9%]), while positive rates for small mammals were higher in April (n = 123) (3 A. phagocytophilum infections [2.4%], 42 A. platys infections [34.1%], 2 E. chaffeensis infections [1.6%], 9 E. ewingii infections [7.3%], and 22 E. canis infections [1.9%]). R. rickettsii was observed in ticks collected during June (28) and in small mammals collected during March (19) and April (3).
E. chaffeensis sequences were compared with those of other isolates of E. chaffeensis available in GenBank. The E. chaffeensis 0214 sequence (present study) was homologous to those of other Korean (99.7%) (AY350424), U.S. (99.7%) (AF416764), and Chinese (99.7%) (AF147752) isolates. The homology level between the two nucleotide sequences determined in this study varied from 96.2% to 100%. Comparative analysis of nucleotide sequences of the Korean strains determined in this study and the 16S rRNA sequences of 14 known Ehrlichia spp. available in the GenBank database is shown in Table 6. Phylogenetic analysis showed that E. chaffeensis 0214 clustered together with Korean, Arkansan, and Chinese strains of E. chaffeensis (Fig. 1).
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TABLE 6. Homology comparison of Korean Ehrlichia chaffeensis 16S rRNA gene fragment (390-bp) sequences with those of other strains
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TABLE 7. Homology comparison of Rickettsia sp. ompA gene fragment (532-bp) sequences
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Simple and easy methods for the identification of tick-borne pathogens in ticks and wild animals are necessary for a rapid analysis of disease-causing agents in developing an accurate risk assessment for soldiers training in the field. TaqMan PCR has proven to be a relatively easy and rapid method for the detection and identification of microorganisms in field samples, such as ticks (32), and in a previous report, its sensitivity was identical to that of nested PCR (6). These techniques can also be applied for rapid diagnosis with other samples, e.g., blood from patients suffering from a febrile disease with an unknown etiology.
16S rRNA gene sequence analysis is a widely used method for characterization of pathogenic bacteria, especially for the genera Ehrlichia and Anaplasma. Primers ECC and ECB (12) were used to amplify a segment of the 16S rRNA gene, which includes the specific primer regions of four Ehrlichia/Anaplasma-related pathogens (A. platys, E. chaffeensis, E. ewingii, and E. canis) examined in this study (Table 1). For A. phagocytophilum and E. muris, we designed separate primers from ECC and ECB because there are no species-specific regions between the ECC and ECB sequences. While these primers effectively identified pathogens to the species level, approximately two-thirds of the Anaplasma/Ehrlichia-positive samples were unidentified. Some of these positive samples may represent other infectious agents previously identified in Korea, i.e., E. bovis, A. marginale, and A. centrale, or may represent unknown or previously unreported pathogens.
Ticks of the genera Hemaphysalis and Ixodes collected from grass were found to be infected with one or more of the six tick-borne pathogens tested (A. phagocytophilum, A. platys, E. chaffeensis, E. ewingii, E. canis, and R. rickettsii). Three pathogens identified in this study have been reported previously in the ROK (9, 27, 29, 30). To the best of our knowledge, this is the first report of A. platys, E. ewingii, and E. canis in the ROK (9). Screening of ticks as well as small mammalian spleens for the presence of Rickettsia sp. infections corroborated well with earlier findings in the ROK (Joon-Seok Chae, unpublished data). In this study, larval ticks were positive for various Ehrlichia/Anaplasma sp. infections. While transovarial transmission in Amblyomma americanum has not been reported, our results for transovarial transmission of E. chaffeensis parasites in female ticks is undetermined, as 15 pools of larval H. longicornis ticks were positive for E. chaffeensis (33). However, some larval ticks may have been collected either partially or fully engorged, and it is possible that the DNA detected might have been in the host's blood that was ingested by the ticks. While H. longicornis larvae were positive, there were no larval Ixodes spp. taken from rodents positive for E. chaffeensis, even though they had been attached and partially blood fed and 3% of the striped field mice were positive for this pathogen. More studies have to be conducted to determine the status of transovarial transmission of E. chaffeensis and other zoonotic tick-borne pathogens among various species of ticks found in Korea.
There were observed differences in the infection rates of ticks versus small-mammal tissues. For example, only 1 of 1,638 pools of ticks was positive for A. phagocytophilum, while 24% (88/373) of the A. agrarius and 64% (21/33) of Crosidura lasiura (shrew) animals were positive. However, this may be a result of the fact that most of the ticks sampled from tick dragging and flagging were from the genus Hemaphysalis, while nearly all ticks (>99.9%) taken from small mammals were I. nipponensis. Soft ticks, which were not sampled during this study, also may be vectors of various pathogens. More investigations are needed to resolve these differences.
While there is no evidence of Rickettsia sp. infections in animals and only a single case reported among Koreans, the results based on the present study, combined with previous serologic and molecular evidence (24, 29), suggest that cases of febrile illness by spotted fever group Rickettsia in the ROK could be missed during the diagnosis of such illnesses. This is supported by retrospective studies by Song et al. (46) and Baek et al. (5), who demonstrated that a large proportion of patients with suspected hemorrhagic fever with renal syndrome were serologically positive for spotted fever group agents while being negative for hemorrhagic fever with renal syndrome. Specific DNAs of B. burgdorferi and R. japonica were not amplified in this study, although there are previous reports of these infections in Korean patients and ticks (24, 39). Therefore, it appears that cases of febrile illness of unknown etiology in humans as well as animals should always be considered possible tick-borne infections in differential diagnosis.
Since human granulocytic and monocytic ehrlichioses were first reported in 1994 and 1987, respectively, they have been found in many countries by molecular and serologic surveys (8, 10, 34). In particular, tick infestations of wild animals have often been investigated because these animals have a high risk of infections. Epidemiological, molecular, and serological studies provided evidence that wild rodents are the reservoir of Ehrlichia and Anaplasma spp. in the United States, Europe, and Asia. Natural reservoirs for A. phagocytophilum were demonstrated to be white-footed mice (Peromyscus leucopus), eastern chipmunks (Tamias striatus), southern red-blacked voles (Clethrionomys gapperi), and insectivorous shrews (Blarina brevicauda and Sorex cinereus) in Minnesota (51). In Japan, while antibodies against E. muris were detected in Apodemus speciosus and Apodemus argenteus mice (25), they were observed neither in rodent tissues nor from ticks collected near the DMZ in Korea. Our results demonstrate that small mammals captured in the ROK were infected with Ehrlichia/Anaplasma and/or Rickettsia parasites. Infections with Ehrlichia and Anaplasma spp. have generally been considered host specific. However, our studies suggest that several Ehrlichia and Anaplasma spp. can be transmitted to a variety of hosts in nature. Therefore, additional efforts to define the spectrum of host susceptibility in domestic and wild animals are appropriate.
The spotted fever group rickettsiae in Korea were identified using a primer for R. rickettsii. However, phylogenetic analysis revealed that Rickettsia sp. strain 71-8 (present study) formed a single cluster with a Chinese Rickettsia sp., while a U.S. R. rickettsii strain was placed in a different cluster and most likely represents a distinct species. Close clustering with the Rickettsia sp. from China indicated that although Korean strains differed significantly from those of R. rickettsii, there is a potential epidemiological link between the Chinese and Korean strains. Similarly, E. chaffeensis 0214 clustered together with E. chaffeensis strains from Korea, Arkansas, and China, which also indicates the possibility of an epidemiological link between Korea and China. Further studies that provide for molecular characterization and identify the epidemiology, human infection rates, and potential human health hazards of these pathogens are needed.
Previous studies have implicated mites as potential vectors of Ehrlichia and Anaplasma pathogens in Spain (14). In Korea, mites have not been well studied to determine their potential impact on the zoonotic maintenance and transmission of Ehrlichia, Anaplasma, or Rickettsia pathogens. Of 21 mite samples assayed during this study, 4 (19%) were positive for Ehrlichia and Anaplasma spp. However, species-specific DNAs examined in this study were not amplified and may represent Anaplasma or Ehrlichia pathogens previously described from Korea but not evaluated here, unidentified emerging pathogens, or previously unreported pathogens. Further investigation is needed to determine the role of mites in maintenance and transmission of zoonotic vector-borne pathogens. However, the association between positive TaqMan PCR and negative PCR for nine tick-borne pathogens has not been determined.
Ixodid ticks play an important role as a reservoir for latent infections with various tick-borne pathogens (4, 7). In 2003, three members of the family Anaplasmataceae, including E. chaffeensis, A. phagocytophilum, and A. bovis, were initially described in the ROK (27). Until now, there have been very few reports of epidemiological studies for tick-borne disease surveillance in the ROK, in contrast with numerous reports throughout the world. These studies have enabled us to provide further information on the epidemiology of tick-associated pathogens in the ROK, where little information on the subject exists. Further studies are required for a detailed understanding of these newly emerging tick-borne diseases in the ROK.
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