Limnology/Department of Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyv. 20, SE-75236 Uppsala, Sweden
Received 18 April 2006/ Accepted 4 July 2006
| ABSTRACT |
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) samples from the Bothnian Bay (latitude, 65°N). The unsuspected and widespread occurrence of this population in temperate and boreal coastal waters suggests that potential Vibrio pathogens may also be endemic to cold and brackish waters and hence may represent a previously overlooked health hazard. | INTRODUCTION |
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The presence of V. cholerae and other Vibrio spp. together with related diseases in tropical and temperate environments is well documented (3, 6, 14, 15, 17, 44, 45). However, reports about the occurrence and distribution of Vibrio spp. in northern temperate and boreal waters are rare (11) and restricted to single species (e.g., V. vulnificus from the Danish Coast) (17). There have even been recent cases of fatal V. cholerae non-O1, non-O139 infections in coastal areas surrounding the Baltic Sea (32). The exact sources of the infections remained unclear, but they were all linked to either contact with seawater or consumption of fish. In general, Vibrio spp. tolerate a wide range of salinities and tend to be more common in warm waters, notably when temperatures exceed 17°C (23, 26, 27, 35, 45). Also, host and vector organisms are important for the survival of Vibrio spp. (13, 14, 29). For example, V. cholerae and V. parahaemolyticus can develop biofilms on the cortex of copepods (20, 25), and V. vulnificus can be isolated from gills, intestinal contents, and mucus of fish (17). Several recent studies have corroborated that marine host and vector organisms can promote the survival of Vibrio spp. and hence influence their persistence and distribution in the environment (1, 17, 19, 20, 21, 25, 39, 40, 48).
Most studies on the occurrence of Vibrio spp. in natural environments have been based on culture-dependent techniques. It is well known that many Vibrio spp. enter viable but nonculturable growth states when exposed to low temperatures or otherwise adverse growth conditions (38, 41, 42). Cells in this state evade detection by culture-dependent techniques since they are incapable of growing on conventional media even if they maintain both viability and pathogenicity (38, 41, 42). Hence, surveys using culture-independent molecular methods are needed to fully understand the ecology and distribution of Vibrio spp. in aquatic environments. To address this, a molecular technique combining quantitative competitive PCR (QC-PCR) with denaturant gradient gel electrophoresis (DGGE) for the quantification of individual populations within the genus Vibrio was developed in our laboratory (10). This QC-PCR-DGGE assay can distinguish between closely related Vibrio populations and detect and quantify as little as 200 Vibrio cells captured on a filter.
The aim of the present study was to assess the abundance of populations within the genus Vibrio along a northern temperate and boreal coastline with a culture-independent technique and analyze the relationship between the abundance of different Vibrio populations and environmental-state variables. This was done to both survey the presence and niche separation of Vibrio populations and identify potential environmental factors influencing Vibrio survival and dispersal in coastal waters that are characterized by average annual temperatures below 10°C.
| MATERIALS AND METHODS |
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Chlorophyll a, phytoplankton, and microzooplankton.
For chlorophyll a analyses, phytoplankton from between 1 and 2 liters of water were captured on Whatman GF/F filters (0.7-µm nominal pore size) and immediately frozen at 80°C. Filters were placed in 10 ml ethanol and incubated in the dark at room temperature overnight with intermittent mixing. Extracts were cleared by centrifugation (4,000 rpm, 10 min), and chlorophyll fluorescence was measured on a Fluoromax-2 spectrofluorometer (Spex) equipped with an external microplate reader (18). Fluorescence was calibrated against an ethanol extract of geranium leaves where chlorophyll a had been determined from the absorbance at 665 nm with background correction at 750 nm (22). For identification and counting of phytoplankton and microzooplankton, 150 to 250 ml of integrated water samples was fixed with 1% acid Lugols solution and kept cold (4°C) until analyses. Subsamples (50 to 100 ml) were counted using an inverted microscope (magnification, x200 to x400) in a settling chamber (46). The entire chamber or at least 100 individuals of each species were counted. All dinoflagellates, diatoms, large flagellates (>15 µm), cyanobacteria, and ciliates were identified at the highest possible taxonomic resolution (for details, see reference 24).
Bacterial abundance.
Samples were preserved with borax-buffered and 0.2-µm-filtered formaldehyde (final concentration, 2% [vol/vol]) for analysis of total bacterial abundance by flow cytometry after Syto 13 staining of nucleic acids (7). Counts of selected samples determined microscopically after staining with DAPI (4',6'-diamidino-2-phenylindole) (8) were in excellent agreement with flow cytometry counts (slope, 0.98; R2 = 0.92; n = 9).
DNA sampling and extraction.
Bacterial cells in various volumes of seawater (0.45 to 5 liters) were captured on 0.2-µm (total bacteria) and 0.8-µm (attached bacteria) membrane filters (Supor, Gelman) using a manual vacuum pump and sterile filter manifolds. The funnel and filter holder were soaked in 10% HCl, rinsed in sterile Q-grade ultrapure water, and autoclaved in one piece prior to sampling. Filters were immediately frozen and stored in liquid nitrogen, transported to the laboratory, and transferred to 80°C for long-term storage. DNA was extracted from filters by mechanical disruption using the Ultra Clean soil DNA kit (MoBio Laboratories, Solana Beach, CA) according to the manufacturer's instructions for high DNA yield. These procedures resulted in 50-µl aliquots of high-quality DNA with an average size of
20 kb, as determined by electrophoretic separation on a 1% agarose gel followed by ethidium bromide staining and detection by UV transillumination (10). Quantification was carried out by comparison of band intensities to a low-DNA-mass ladder (Invitrogen, Carlsbad, CA).
Vibrio identification and quantification.
Vibrio populations were identified and quantified as described elsewhere (10). Briefly, between 10 and 20 ng of environmental DNA was used as a template for PCR amplifications with primers GC567F and 680R (45). Each DNA extract was amended with 1 µl internal competitor DNA corresponding to 20 cells of a V. mimicus strain (GenBank accession number DQ068933). The amplification was performed using SureStart Taq polymerase (Stratagene, La Jolla, CA) as described elsewhere (10, 45). Sequence variants in subsamples containing 10- to 50-ng PCR products were then separated on a 45 to 70% urea-formamide DGGE gel parallel to three standard samples containing mixtures of known Vibrio isolates to enable migration-based identification of indigenous populations (10). The applied separation conditions were stringent enough to separate fragments with single nucleotide differences (10). The gels were stained with SYBR gold (Molecular Probes), and detection of bands by transillumination was carried out using a Spectronics variable-intensity UV source with a diffuser plate and a cooled, 12-bit monochrome charge-coupled-device camera with a SYBR gold filter (Coolsnap Pro CF; Media Cybernetics Inc., Silver Spring, MD). SYBR gold fluorescence of individual DNA bands was quantified and compared using the imaging and gel analysis software Gelpro Analyzer (Media Cybernetics Inc.). The abundance of each Vibrio population observed in a sample was determined from the intensity of its corresponding DGGE band using an experimentally derived titration curve of log-transformed values: log(Pi) = log(APi/AStd) x 0.604 + 3.293, where Pi is the number organisms of population i, APi is the integrated fluorescence signal of the DGGE band corresponding to population i, and AStd is the integrated fluorescence signal of the DGGE band of the internal competitor DNA (10).
Environmental clone library construction and sequence analyses.
A GC567F-680R clone library was constructed from three Skagerrak Sea samples and three Baltic Sea samples. PCR products amplified with the Vibrio-specific primer pair were gel purified and cloned into the pCR-4-TOPO vector and transformed into competent Escherichia coli One Shot TOP10 cells using the TOPO-TA cloning kit for sequencing (Invitrogen, Carlsbad, CA). A total of 20 clones from each library were selected for further analysis. These clones were cultivated in LB with kanamycin at 37°C overnight. Cells were collected by centrifugation, and crude lysates were obtained by dissolving the pellets in sterile Q-grade water and heat lysing the cells at 98°C for 10 min (9).
Inserts from individual clones were amplified with the vector primers M13f and M13r (9). PCR products were quantified by agarose gel electrophoresis and diluted to 10 ng µl1 before direct sequencing with primer M13f (9). All sequenced inserts were compared to GenBank entries (December 2005) using BLASTN to identify Vibrio strains with identical target sequences. The combined Vibrio community usually cannot be resolved at the species level (for more discussion, see references 10 and 45). Hence, a Vibrio population is defined as all cells that share an identical sequence in the 16S rRNA gene fragment amplified by the Vibrio-specific primers.
Statistical analyses.
Statistica software (StatSoft, Tulsa, OK) was used for calculating correlation coefficients (nonparametric Spearman rank) and stepwise multiple linear regression analysis (MLR) [after testing for normal distribution and homogeneity of variances, variables were log(x + 1) transformed]. Correlations and regressions were considered significant if the P value was <0.05.
Partial least-squares regression analysis (PLS) included in the SIMCA-P+ software (version 10.0.2.0; Umetrics, Umeå, Sweden) was applied to identify environmental variables that could predict the distribution of the total Vibrio community and single Vibrio populations [variables were log(x + 1) transformed].
Nucleotide sequence accession numbers.
The sequences obtained for inserts from individual clones have been deposited in GenBank under the accession numbers DQ351691 to DQ351698.
| RESULTS |
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(see Table S1 in the supplemental material). Phosphorus concentrations varied both within and between stations and ranged from 4 to 40 µg P liter1, with the lowest levels in samples from the Bothnian Sea and Bothnian Bay. Nitrogen concentrations ranged from 0.08 to 0.26 mg N liter1, with the highest levels in samples from the Northern Baltic proper. Water temperatures ranged from 12 to 18°C during the sampling period (June to September), and the concentration of chlorophyll a ranged from 1.8 to 6.6 µg liter1, with the highest values in the Northern Baltic proper (see Table S1 in the supplemental material). The Skagerrak phytoplankton community was strongly dominated by dinoflagellates throughout the sampling period (up to 8 x 104 cells liter1). Also, in Öresund and the Baltic Sea proper, dinoflagellates were the most abundant group of phytoplankton, but there were also high levels of other flagellates and an autotrophic ciliate (Myrionecta rubra) in Öresund and cyanobacteria in the Baltic Sea proper (24). Samples from the Bothnian Sea and Bothnian Bay were even more heterogeneous, with, at most, 40% dinoflagellates. Both small and large ciliates were present in all samples, but the highest abundances were found in June samples from the Skagerrak Sea and August samples from the Northern Baltic proper (>104 cells liter1) (24). Several dinoflagellate groups were strongly correlated to total dinoflagellate abundance (e.g., Dinophysis, Gymnodinium, and Protoperidinium; P < 0.01), whereas this was not the case for either Ceratium or Prorocentrum. These two groups were most abundant in Skagerrak and also experienced marked seasonal dynamics (24).
Total Vibrio abundance.
The culture-independent QC-PCR-DGGE method detected 16S rRNA genes from bacteria of the genus Vibrio in all samples collected along the Swedish coastline. Total Vibrio abundances (captured on 0.2-µm filters) determined by QC-PCR-DGGE ranged from 4 x 103 to 9.6 x 104 cells liter1 (Table 1), with the highest levels in samples from the Skagerrak Sea. Vibrio species contributed between 0.002 and 0.015% to the total bacterioplankton cell counts (Table 1; see Table S1 in the supplemental material). Total Vibrio abundances correlated significantly with salinity (R = 0.65; P < 0.01) and the total abundance of dinoflagellates (R = 0.68; P < 0.01) as well as with individual groups of dinoflagellates; e.g., Gymnodinium (R = 0.67; P < 0.01), Protoperidinium (R = 0.86; P < 0.01), Dinophysis (R = 0.55; P < 0.01), and Ceratium (R = 0.69; P < 0.01). A PLS model also revealed similar results, where salinity, phosphorus concentration, and dinoflagellates were important predictors of total Vibrio abundance (Fig. 2).
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Quantitative distribution of Vibrio populations.
In this survey, a total of 10 Vibrio populations were detected in the 28 samples analyzed. Between two and seven populations were detected for the individual samples. Cloned 16S rRNA gene sequences were obtained for eight of these populations, and each population represented a unique allele of the PCR-amplified fragment. Most populations matched database entries for more than one Vibrio species (Table 2). Samples from Northern Baltic proper typically contained fewer populations (average of 3.9) than the other four regions (average of 4.3 to 5). Individual Vibrio populations were present in abundances ranging from 1 x 102 to 7 x 104 cells liter1. Different populations dominated the Vibrio communities in the Skagerrak Sea and the more brackish waters of the Baltic Sea. The high-salinity populations 1, 5, and 7 dominated in the Skagerrak Sea, whereas population of V. anguillarum/V. ordalii (Table 1) and population 6 dominated the Vibrio community of the brackish environments. A low abundance (300 cells liter1) of a population characteristic for V. vulnificus was detected in a single 0.8-µm sample from the August sample at Skagerrak station C. Another potentially pathogenic population exclusive for V. cholerae and a few strains of V. mimicus was detected in more than 50% of the samples at abundances reaching 104 cells liter1. The highest abundances were observed in the Skagerrak Sea samples, whereas this population never exceeded 5.5 x 103 cells liter1 in the Baltic Sea. This V. cholerae population was significantly correlated with chlorophyll a (R = 0.64; P < 0.01), nitrogen concentrations (R = 0.56; P < 0.01), and Prorocentrum abundance (R = 0.69; P < 0.01). However, MLR revealed only weak predictability based on the measured parameters. The abundance of most other Vibrio populations could be predicted from the abundance of various microeukaryotes and total phosphorus and nitrogen concentrations using PLS and MLR (see Table S2 in the supplemental material).
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| DISCUSSION |
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) and over the sampling season, suggesting that these bacteria are also a natural component of planktonic microbial communities in the cold waters of the Swedish coastline. This observation is supported by previous culture-independent studies where vibrios have been detected in more-southern temperate waters throughout a yearly cycle (11, 45). However, estimated Vibrio abundances in the present study are much lower than values reported for southern temperate waters that were based on either fluorescent in situ hybridization (11, 14) or QC-PCR combined with constant denaturant capillary electrophoresis (45). So far, these three surveys are the only studies that have employed culture-independent techniques to estimate the total Vibrio abundance in coastal waters (11, 14, 45). These studies revealed temporal variations in Vibrio abundance, with lower Vibrio abundances at low temperatures. In fact, total Vibrio abundances in winter samples from Barnegat Bay, New Jersey (45), were similar to abundances observed in the summer samples from the present study. When total Vibrio abundances fell below 105 cells liter1, water temperatures were always less than 18°C. It is plausible that such low temperatures may limit the abundance of vibrios in coastal waters (23, 26, 27, 35, 45), but it is nevertheless clear that many populations maintain viable populations even under the conditions characteristic of the Baltic Sea, where the annual average temperature rarely exceeds 8°C.
In the present study, bacteria of the genus Vibrio were less abundant in the brackish waters of the Baltic Sea (2 to 6
salinity). This may be due to differences in water characteristics other than salinity; MLR and PLS (Fig. 2A; see Table S2 in the supplemental material) models showed that salinity, phosphorus concentration, and the abundance of microeukaryotes such as dinoflagellates were strongly correlated to Vibrio abundance in the coastal waters studied. These results are in agreement with previous culture-dependent surveys in temperate and tropical waters that have shown strong correlations between salinity as well as nutrient concentration and the abundance of Vibrio spp. such as V. vulnificus (17, 27, 35) and V. cholerae (12). Furthermore, the strong correlation between dinoflagellate abundances and total Vibrio abundance suggests that dinoflagellates may promote Vibrio survival and dispersal in Swedish coastal waters or positively affect the growth of Vibrio populations by releasing bioavailable dissolved organic substrates. The observation of significant correlations between total Vibrio abundance and several bloom-forming dinoflagellates, e.g., Gymnodinium, Protoperidinium, Dinophysis, and Ceratium, suggest that not only V. cholerae (21, 36, 47) but also other Vibrio spp. are promoted by these phytoplankton groups.
Different Vibrio populations seem to be regulated by different environmental variables. For example, the population of V. anguillarum/V. ordalii (Table 2) was abundant in the Baltic Sea but mostly absent from the Skagerrak Sea samples (Table 1) and significantly negatively correlated with salinity (R = 0.44; P < 0.05). In contrast, high-salinity populations 1, 5, and 7 were dominant in the Skagerrak Sea samples and significantly positively correlated with salinity (R ranging from 0.58 to 0.70; P < 0.01), indicating that these populations are better adapted to higher salinities than the population of V. anguillarum/V.ordalii. With the exception of V. cholerae and V. mimicus, all Vibrio spp. are believed to require Na+ for growth. Minimum Na+ concentrations for optimal growth vary substantially between species (12). In seawater, Na+ contributes approximately 30% to the total ion concentration, and its relative contribution can be as low as 7% in some freshwaters. Thus, variations in Na+ may be even more pronounced than the observed gradient in salinity. This, combined with the observed differences in Vibrio community composition, suggests that the brackish waters in the Baltic Sea harbor Vibrio communities that are distinctly different from more saline (higher Na+ concentration) marine waters. MLR (see Table S2 in the supplemental material) and correlation analyses suggested that not only salinity but also phosphorus, nitrogen, and vector organisms influenced the various Vibrio populations in contrasting ways. The results suggest that the different Vibrio populations inhabit distinct niches in their aquatic habitat and that some Vibrio populations may, for example, be superior competitors for resources like nitrogen, phosphorus, or phytoplankton-derived dissolved organic matter. For example, the population of V. anguillarum/V. ordallii was significantly correlated with chlorophyll a (R = 0.61; P < 0.01) and cyanobacterial abundance (R = 0.55; P < 0.01), whereas the V. cholerae population was significantly correlated with Prorocentrum abundance (R = 0.69; P < 0.01). Thus, intragenus competition may be an important factor regulating the growth and persistence of pathogenic Vibrio spp. in natural aquatic environments.
A V. cholerae/V. mimicus population was detected along the entire Swedish coastline. Since no serotyping was performed, it is not known whether the detected population included strains of recognized pathogenic serogroups such as serogroups O1 and O139. V. cholerae strains, including pathogenic serotypes (also other than O1 and O139) (32), have been isolated from estuarine and coastal waters along the Pacific, Atlantic, and Gulf coasts of the United States and have also been isolated in Australia, Africa, Asia, and throughout Europe (30). However, to our knowledge, this is the first time that V. cholerae and/or the closely related organism V. mimicus has been detected in boreal brackish waters with an annual average temperature of around 5°C and at a latitude as far north as 65°. It is likely that this Vibrio population has escaped detection in these waters because previous studies have been biased by the use of culture-dependent methods; many Vibrio spp. survive in a viable but nonculturable state when exposed to low temperatures or otherwise adverse growth conditions (38, 41, 42). It cannot be excluded that nonviable bacteria will be detected by our PCR-based method. However, the more than occasional detection of the V. cholerae population in our survey suggests that these organisms are a natural component of the bacterioplankton community in the brackish environment of the Baltic Sea. Previous work corroborates that V. cholerae can maintain viability at temperatures below 15°C and at salinities ranging from 2 to 14
in brackish environments (31), and other studies suggested increased survival and proliferation upon associations with eukaryotic microorganisms (1, 48).
V. cholerae and other Vibrio spp. are known to form biofilms (47) and associate with particles as well as organisms (1, 13, 17, 19, 20, 21, 25, 39, 40, 43, 48). However, in our study, typically between 73 and 89% (median of 5 to 21 samples where a population was detected) of the cells from each Vibrio population remained free living rather than particle or plankton attached (e.g., captured on a 0.8-µm filter) (Table 1). The only exception was the V. anguillarum/V. ordalii population, where 43% of the cells were captured on a 0.8-µm filter (median from 21 samples where this population was detected). In marine systems, particle association may not always be advantageous. For example, while particle attachment provides refuge from protozoa and high nutrient concentrations, it may also subject vibrios to sinking and sediment burial or ingestion by larger predators. On the other hand, one might hypothesize that particle ingestion could be beneficial for many vibrios (assuming survival in the eukaryote intestine), since they are then exposed to a nutrient-enriched environment.
In conclusion, environmental factors such as temperature, salinity, phosphorus concentration, and dinoflagellate abundance were important predictors of total Vibrio abundance, and there were marked differences in the distribution patterns of individual populations. There is clearly a need for serological studies, since Vibrio populations that may include pathogenic serotypes were detected along the entire coastline studied.
| ACKNOWLEDGMENTS |
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This work was funded by the Swedish Research Council for Environment, Agricultural Sciences, and Special Planning (FORMAS grant 2004-0634 to S.B. and grant 22.3/2003-0209 to M.J.), the Carl Tryggers Foundation (grant CTS02:26 to S.B.), the Ax:son Johnson Foundation (grant to A.E.), and the Swedish Research Council (grants to S.B.).
| FOOTNOTES |
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Supplemental material for this article may be found at http://aem.asm.org/. ![]()
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