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Applied and Environmental Microbiology, September 2006, p. 6234-6241, Vol. 72, No. 9
0099-2240/06/$08.00+0 doi:10.1128/AEM.00744-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.

Plant Pathology Department, University of Wisconsin, Madison, Wisconsin 53706
Received 30 March 2006/ Accepted 19 June 2006
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1 A. pullulans cell. In general, as seasons progressed, the percent occupancy of features increased and, for most midvein and veinal features, approximated 100% at the end of both growing seasons. Except for early collections, when A. pullulans cell numbers were low, the percent occupancy of interveinal regions was lower than that of the midvein or other veinal regions. A. pullulans was distributed primarily as single cells throughout the seasons in interveinal regions. On the midvein and other veins, colonies of
4 cells developed over time, and more cells occurred in colonies than as singletons by August. Our results demonstrate that A. pullulans primarily colonizes veins, where populations appear to increase by growth in situ. This pattern is established early in the growing season and persists. |
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Microscale colonization was examined recently by tools such as a specific fluorescence in situ hybridization (FISH) probe and epifluorescence microscopy, and Aureobasidium pullulans was found to form cell aggregates on the midvein, other veins, and wounds on the apple phylloplane (4). However, sampling was periodic, and it is unclear when this pattern arises and if it persists throughout the growing season. Possibly it does not persist because the physical surface of the leaf is highly dynamic. The cuticle can erode progressively, which can change the topography, the wettability of the surface, and exudation of nutrients (22, 27, 28). The colonizing microbial community is also dynamic, and some inhabitants may impact other colonists by producing inhibitory compounds (21) or by facilitating colonization (23). Consequently, phylloplane colonizers may constantly be forced to compete for sites and resources on a changing leaf surface (5, 21).
Here, we extend the use of our model system to quantify A. pullulans and to document the spatial pattern of A. pullulans populations at frequent intervals over the course of an entire growing season. A. pullulans, a deuteromycete black yeast (7), is a ubiquitous phylloplane inhabitant with potential as a biocontrol agent of foliar pathogens, such as Venturia inaequalis (1). It is polymorphic, with morphotypes that include blastospores, swollen cells and chlamydospores (SCC), pseudohyphae, and hyphae (26). The fungus produces extracellular polysaccharide (EPS), which promotes adhesion and may prevent desiccation and/or provide protection from environmental stresses (2, 32).
We were interested in three population parameters: abundance (the number of individual A. pullulans cells in an area), occupancy (the occurrence of A. pullulans in a given area, typically a microscope field of a leaf feature), and colonization (establishment of the A. pullulans population on a leaf feature) (9-11). These are fundamental ecological parameters that tend to be related (10). For example, as overall abundance declines, the number of occupied sites also declines; conversely, as abundance increases, the number of occupied sites also generally increases (9). This relationship has been described as one of the most important in ecology (9). However, the nature of the relationship remains unclear, including the roles of spatial and temporal scales (9). Since resource availability can vary temporally and spatially (8), the presence of colonies can reveal whether sites can support growth. This is the first time these parameters have been studied for a microbial species over a significant period of time (an entire growing season) at the microscale level on field leaves. Such information should enhance our understanding of the colonization process in general (10), as well as its relevance to phyllosphere microbial ecology in particular.
The objectives of this study were specifically to determine (i) when microscale colonization patterns develop on field leaves; (ii) if these patterns, once formed, change over the course of the growing season; (iii) the prevalent A. pullulans morphotypes over time and on individual features; (iv) if occupancy of individual features changes over time; (v) the distribution of A. pullulans cells in colonies on features; and (vi) if Geographical Information System (GIS) maps can be used as a rapid method to visually assess critical changes in the distribution of a microbe at a microscale level.
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Sample processing.
Three segments approximately 5 mm wide were removed from the apical third, middle, and basal third of each leaf. If the leaf was too small to remove three 5-mm segments, the entire leaf was processed. Leaf tissue was fixed in 3:1 methanol-glacial acetic acid and stored in 70% ethanol at 20°C until it was processed. Segments were then removed from storage, washed, and prepared for FISH as described previously (17, 29). The A. pullulans-specific FISH probe detects all forms of A. pullulans on leaves (17). Every microscope field along two nonadjacent transects per segment (one about 1.5 mm from the tip and the other about 1.5 mm from the base of the segment) was viewed with epifluorescence microscopy with a 40x long-working-distance objective lens (area of field, 0.196 mm2). Where whole (small) leaves were processed, six evenly spaced, nonadjacent transects were taken.
Data recording.
A. pullulans cell counts were recorded by morphotype (blastospore, SCC, or hyphal) (26) and degree of aggregation (single cells or colony size) with respect to the leaf region (midvein, other smaller veins, and interveinal). Blastospores and SCC were distinguished based on characteristic morphology (cell size and pigmentation) (2, 25, 26). A field containing the midvein was designated a midvein field, and all A. pullulans cells in the field were considered occupants of a midvein region. Fields containing smaller veins (secondary, tertiary, or finer orders) were designated "other veinal fields," and all cells within that field were considered to be occupying "other (smaller) veinal regions." Finally, fields with neither smaller veins nor the midvein were counted as interveinal fields, and A. pullulans cells in these fields were designated occupants of the interveinal regions. Unoccupied fields were similarly recorded, so the number of cells per mm2 of leaf area containing a region of interest could be calculated. Cells in direct contact were considered to be a colony. Multiple morphotypes and colonies and/or single cells were occasionally present in the same field.
Statistical analysis.
A. pullulans population sizes were log10 (x + 1) transformed to achieve normality prior to statistical analysis. To determine if differences in numbers of cells per mm2 on midveins and other veins and in interveinal regions existed, analysis of variance tests were performed with the PROC MIXED procedure in SAS version 8.2 (SAS Institute, Cary, N.C.). This allowed all regions to be compared (midvein to other veins, midvein to interveins, and other veins to interveins) at all dates. The PROC MIXED procedure was also used to determine if SCC and blastospore densities differed in the individual regions. The percentages of occupation of individual regions were also compared by using the PROC MIXED procedure. A microscope field was considered occupied if it contained
1 A. pullulans cell. Percent occupancy by feature was calculated as the number of occupied fields containing the feature of interest divided by the total number of fields containing that feature. To determine if the percent occupation of the total leaf differed over time, Student's t tests (assuming unequal variances) were conducted by using Microsoft Excel 2003 v. 11 (Redmond, WA). The percentages of individual A. pullulans cells distributed as single cells and colonies of 2 or 3, 4 to 9, or
10 cells were also compared by using Student's t test (assuming unequal variances) with Microsoft Excel 2003 v. 11. Colony (or single-cell) sizes were compared among the individual features on the same sampling dates.
GIS plots.
To facilitate the interpretation of colonization patterns, ArcView GIS version 3.2 (ESRI, Redlands, CA) was used to represent spatial data visually. Macro programs were generated by using Microsoft Excel, which stacked transects for GIS plots on a prime meridian with the midvein as a vertical reference point (4). This allowed the cell number, cell type, and leaf region for each microscope field to be placed on an artificial grid of longitude and latitude. Leaves (one per date) from 3 May, 7 June, and 30 September 2004, representative of A. pullulans cells, colony size, and distribution on the respective dates, were chosen for the GIS plots to depict the major trend in colonization. Spatial data from three segments and two transects per leaf were used for each GIS plot.
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0.05) from each other, with A. pullulans densities on midveins higher than on other veins and in interveinal areas and densities over other veins higher than over the interveinal regions.
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FIG. 1. Mean log10 (x + 1) A. pullulans (Ap) cells/mm2 (± standard deviation) on midveins and other veins and in interveinal regions over the 2003 (A) and 2004 (B) growing seasons. Sampling dates are identified by the month-year convention. The numbers of cells/mm2 were determined by using the total number of fields (each field was 0.196 mm2) per leaf transect containing the feature of interest (midveins, other veins, or intervein). Ten leaves were examined on each sampling date. Three segments/leaf and two transects/segment were evaluated. The arrows indicate the first date on which all three regions were significantly different (P < 0.05) from each other.
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Morphotype of A. pullulans.
The results in 2003 and 2004 were similar; thus, only data for 2004 are presented (Fig. 2A to C). Blastospores were always found on at least one site on all sampling dates, but the numbers of blastspore cells were extremely low at all times. The predominant morphotype was SCC. The numbers of SCC per mm2 on midveins and other smaller veins and in interveinal regions were significantly higher (P
0.05) than the numbers of blastospores on each respective leaf feature at all sampling dates. By 7 June and on all sampling dates thereafter, SCC densities were significantly higher over midveins than either over other veins or in interveinal regions, and densities over other veins were significantly higher than those over interveinal features.
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FIG. 2. Mean log10 (x + 1) A. pullulans (Ap) SCC and blastospores/mm2 (± standard deviation) on midveins (A) and other veins (B) and in interveinal regions (C) over the 2004 growing season. Sampling dates are identified by the month-year convention. The numbers of cells per mm2 were determined by using the total number of microscope fields (each field was 0.196 mm2) per leaf transect containing the feature of interest (midveins, other veins, or interveinal sites). Fields included one or both morphotypes (SCC and blastospores). Ten leaves were examined on each sampling date. Three segments/leaf and two transects/segment were evaluated.
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0.05) than the percentages of occupation on all other sampling dates (Table 1). Commencing on 14 June, at least 50% of the overall fields were occupied, with the highest occupancy occurring on 6 August, when about 80% of all fields contained
1 A. pullulans cell. |
View this table: [in a new window] |
TABLE 1. Occupancy of individual leaf features (midvein, other vein, or interveinal) and the overall leaf by Aureobasidium pullulans cells
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0.05) than the percentages of occupied smaller vein or interveinal fields (with the exception of 6 August, 7 September, and 12 October, when the percentages of occupied midveins and other veins were not significantly different). On all sampling dates after 18 May, the percentage of occupied smaller vein fields was significantly higher (P
0.05) than the percentage of interveinal fields occupied. The largest percentages of occupied smaller-vein fields were about 98% on 6 August and 12 October. On the first two sampling dates only (3 May and 10 May), the percentages of interveinal fields occupied were significantly higher (P
0.05) than the percentages of occupied smaller-vein fields (there was not a significant difference between other veins and interveinal fields on May 18). The percent occupation of interveinal fields fluctuated substantially throughout the growing season but overall averaged less than 50%.
Colony formation.
The 2003 and 2004 results were similar, so only the 2004 results are presented. Early in 2004 (3 May and 10 May), A. pullulans was distributed in all regions largely as single cells (Fig. 3A to C). A. pullulans continued to be distributed primarily (
70% of A. pullulans cells) as singletons in interveinal regions (Fig. 3C). Fewer cells were in colonies of 2 or 3 cells (no more than 22% at any date), and very few A. pullulans cells were in colonies of 4 to 9 or
10 cells (less than 5% on all sampling dates). On midveins and other smaller veins, the percentages of A. pullulans cells in colonies increased over time (Fig. 3A and B). Few cells (P
0.05) were distributed as individuals on midveins and other smaller veins on 14 June and thereafter compared to those on interveinal features. At the end of the season, a higher percentage of cells were distributed in colonies of
10 cells (over 20% of cells on some dates on midveins and over 10% on some dates on other veins). By 6 August and thereafter, significantly more cells (P
0.05) were distributed in the largest colonies (colonies of 4 to 9 and
10) on midveins and smaller veins than in interveinal regions (with the exception of 12 October, when there were no significant differences between the numbers of colonies of
10 cells on other veins and in interveinal regions). The highest mean numbers of cells in colonies of four to nine cells/mm2 on midveins and other veins and in interveinal regions were 104.6 ± 19.7 (on 16 August), 41.4 ± 14.8 (6 August), and 2.7 ± 3.2 (6 August), respectively (data not shown). The highest mean numbers of colonies of
10 cells/mm2 on midveins and other veins and in interveinal regions were 62.8 ± 41.6 (30 September), 12.6 ± 11.1 (6 August), and 0.026 ± 0.081 (7 September), respectively (data not shown). While colonies were numerous on other veins, and especially midvein sites, at least some portions of veins in all fields remained uncolonized.
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FIG. 3. Percentages of A. pullulans (Ap) cells distributed as single cells (horizontal stripes) and in colonies of 2 or 3 cells (dark gray), 4 to 9 cells (checkered), or 10 cells (black) on midveins (A) and other veins (B) and in interveinal regions (C) during the 2004 growing season. Sampling dates are identified by the month-year convention. Colony size was defined as the number of A. pullulans cells in direct contact. Each field was designated as midvein, other vein, or interveinal, but multiple colonies and/or single cells could be present in each field.
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0.05) than in interveinal regions, and occupancy was higher (Table 1). The last plot (Fig. 6) (from 30 September) is representative of the number of A. pullulans cells and distribution late in the growing season, when the colonization pattern (visible in the 7 June plot) was even more apparent. The plot displays 469 total fields (8 midvein, 126 other vein, and 335 interveinal fields) on six transects. In both distribution (occupancy of microscope fields) and density, cells (nearly all SCC) were highly localized to veins.
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FIG. 4. GIS plot showing the spatial distribution of Aureobasidium pullulans on the adaxial surface of an apple leaf sampled on 3 May 2004, when A. pullulans SCC and blastospore counts were low. The leaf is representative of the 10 leaves sampled and examined by FISH on that date. Three leaf segments (separated vertically by blank space) and two transects per segment are displayed. All microscope fields (one field was 0.196 mm2) from each transect are depicted. The top line of the transect maps the blastospore counts, the middle line displays the SCC counts, and the bottom line shows the microsite features present in the fields.
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FIG. 5. GIS plot showing the spatial distribution of Aureobasidium pullulans on the adaxial surface of an apple leaf sampled on 7 June 2004, when a veinal pattern in A. pullulans density began to develop (see the legend to Fig. 4 for GIS plot specifications).
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FIG. 6. GIS plot showing the spatial distribution of Aureobasidium pullulans on the adaxial surface of an apple leaf sampled on 30 September 2004, when A. pullulans cells were primarily SCC and highly localized to veinal sites (see the legend to Fig. 4 for GIS plot specifications).
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One important result from this study relates to the onset of veinal colonization. Early (May and June) in both seasons, the occupancy of the midvein, other veins, and interveinal regions appeared to be random, likely the result of random immigration events. This was reflected in low numbers of cells of A. pullulans on all features, where on some transects there were no A. pullulans cells on veinal sites. Our evidence also suggests that A. pullulans arrives as single cells (at least early in the season), because nearly all cells at this time were singletons. Immigration followed by successful establishment constitutes colonization (11). High immigrant numbers would increase the chances of an individual immigrant arriving at a site favorable for growth. Significant differences in spatial pattern then become apparent. The source and size of the A. pullulans immigrant pool throughout the growing season need to be investigated, along with whether young leaves can support the formation of colonies.
As the season progressed, large colonies formed mainly on veinal sites. This shows that the leaf surface as it develops can support at least local growth with endogenous or possibly exogenous nutrients. Intensive, season-long sampling showed that veins evidently also support more growth late in the growing season, as reflected by the presence of larger and more numerous A. pullulans colonies over time. Colony sizes were consistently larger on veins, but there were occasionally small colonies in interveinal regions, so more or less growth was possible on all features. Dense colonization of veins has been attributed to preferential accumulation of cells in veinal channels due to rain events (25, 31) or to growth promoted by higher nutrient concentrations (16, 25).
While large colonies were present on veins, and almost all (95%) veinal fields were declared occupied (i.e., they contained at least one A. pullulans cell) at the end of the season, we observed uninhabited areas on all veins, even on the densely colonized midvein. Possibly only portions of these veins can support A. pullulans growth, either due to the differential presence or absence of growth-promoting or -inhibiting factors or because of prior occupation by other microorganisms. Alternatively, veinal colonies may expand slowly because organisms on the phylloplane are subjected to periodic harsh environmental conditions. Some evidence for this possibility is provided by the finding that SCC were the dominant morphotype at all times on all sites in the growing season. This is the morphotype that produces EPS, which is thought to promote adhesion, prevent desiccation, and/or provide protection from environmental stresses, such as UV radiation (2, 32). The outer wall of chlamydospores contains melanin (26), and pigments have also been shown to provide protection from UV radiation (12).
SCC may be the predominant morphotype, but blastospores were present in low numbers on all sampling dates. It is speculated that they are the dispersal form, because they lack EPS and are the budded morphotype (2, 26). However, their paucity indicates that if they are the immigrating morphotype, they likely convert quickly on the phylloplane to SCC (the probable survival form), die, or are eroded from the leaf by wind or rain. When conditions are favorable for growth, SCC apparently bud blastospores, forming colonies of the sizes observed late in the growing season. Further studies are needed to determine the biotic and abiotic factors that trigger growth episodes.
The GIS plots provided a rapid, visual method to express and interpret spatial colonization data. These maps could be extended to express similar data for other epiphytes or pathogens, thereby depicting the topographical data for competitors. Such displays could be useful in screening for prospective antagonists (6).
Kinkel et al. (14) proposed a general framework for microbial colonization of leaves that is relevant to some of our findings. According to their model, aggregation of resources would reduce the total number and proportion of colonizable sites when immigration is random. We found that colonization was highly localized to veinal regions, likely, according to the model, because resources are more available in those areas. Another prediction is that when resources are aggregated, immigrants to these sites will have a greater local reproductive potential than if resources are distributed uniformly. Large A. pullulans colonies in veinal regions, and their absence on interveinal features, fit this prediction. If this is the case, there is also a greater mean carrying capacity per colonizable feature (in the absence of saturating immigration), and it would take longer or more frequent periods of growth-promoting conditions for a microbial population to reach carrying capacity than if resources were uniformly distributed. Our results showed that veinal regions were not fully colonized, possibly because there are only fleeting periods during which conditions allow population expansion. If resources are aggregated, in the absence of immigrants some of the favorable microsites are unoccupied, and the leaf remains below its carrying capacity. This seemed to be evident early in the season, when A. pullulans cell counts were low. As the season progressed, a greater percentage of the leaf area became occupied. Growth occurs during occasional favorable periods by the budding of blastospores from SCC. Concurrently, new immigrants arrive and allow further colonization of the veins. The interveinal area appears to be a relatively inhospitable and largely unoccupied terrain, where little if any growth occurs.
We thank Russell Spear for helping in many ways and Jack Whitney and Keyton Kuykendall for laboratory and field assistance.
Present address: Plant Pathology Department, Michigan State University, East Lansing, MI 48824. ![]()
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